View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_high_7 (Length: 469)
Name: NF5962_high_7
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 15435469 - 15435917
Alignment:
| Q |
18 |
gtatgagctttaacagcatgcaaattcctttcttttagtaattttatttgtattattgtttttaattatccgattctcaagcaaagggcattggtaatcc |
117 |
Q |
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| T |
15435469 |
gtatgagctttaacagcatgcaaattcctttcttttagtaattttatttgtattattgtttttaattatccgattctcaaggaaagggcattggtaatcc |
15435568 |
T |
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| Q |
118 |
gaagttcggccagagataaataaagtctagttaagaattgtttcatctaaaaagcaaactcggattctcctgaataattcgtcattggtagagttcatta |
217 |
Q |
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| T |
15435569 |
gaagttcgacaa-aggtaaataaagtctggttaaaaattgtttcatccaaaaaataaattcgaattctcctgaataatttgtcattggtagagtccatta |
15435667 |
T |
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| Q |
218 |
a-------agtccaattatttgatttattaatgagattaaaacgttgtagtaaactagccggtattcttctatttaaatatctcaacaannnnnnngggt |
310 |
Q |
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| T |
15435668 |
atcatttgagtccaattatttgatttattaatgagattaaaatgttgtagtaaactagccggtattcttcaatttaaacatctcaacaatttttttgggt |
15435767 |
T |
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| Q |
311 |
ttaccataatatcagtacgaagtttccaccaccgcttgccagtgactaatttccgtcacgaaacatctcaaatattttaactcttgttatcatttatttt |
410 |
Q |
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| T |
15435768 |
ttaccataatattggtacgaagtttccaccaccgcttgacagtaactaatttccttcacgaaacatctcaaatattttaactcttgttatcatttatttt |
15435867 |
T |
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| Q |
411 |
aggatcctctaaggtgcatgataacctttgattttgttttgcatattctt |
460 |
Q |
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| T |
15435868 |
aggatcctctaaggtgcatgataacctttgattttgttttgcattttctt |
15435917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 20239355 - 20239261
Alignment:
| Q |
109 |
tggtaatccgaagttcggccagagataaataaagtctagttaagaattgtttcatctaaaaagcaaactcggattctcctgaataattcgtcatt |
203 |
Q |
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| T |
20239355 |
tggtgatccgaagttcgtctggaggtaattaaagtctggtcaagaattgttttatttgaaaatcaaactcagattcttttgaataatttgtcatt |
20239261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 22133339 - 22133245
Alignment:
| Q |
109 |
tggtaatccgaagttcggccagagataaataaagtctagttaagaattgtttcatctaaaaagcaaactcggattctcctgaataattcgtcatt |
203 |
Q |
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| T |
22133339 |
tggtgatccgaagttcgtctggaggtaattaaagtctggtcaagaattgttttatttgaaaatcaaactcagattcttttgaataatttgtcatt |
22133245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 10533153 - 10533245
Alignment:
| Q |
109 |
tggtaatccgaagttcggcca-gagataaataaagtctagttaagaattgtttcatctaaaaagcaaactcggattctcctgaataattcgtc |
200 |
Q |
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| T |
10533153 |
tggtaatccggagttcggccaagaggtaagtaaagtctacctaagaattgttcaatctaggaatcgaactgaggttctcctgaataattcgtc |
10533245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 12624374 - 12624406
Alignment:
| Q |
134 |
taaataaagtctagttaagaattgtttcatcta |
166 |
Q |
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| T |
12624374 |
taaataaagtctagtcaagaattgtttcatcta |
12624406 |
T |
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