View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5962_high_8 (Length: 435)
Name: NF5962_high_8
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_high_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Original strand, 51507069 - 51507492
Alignment:
| Q |
11 |
tgatcttcaaaatcatcttccaacaatgttttataccattggctggatccaaatgatgataacatttgagcagctggctgacagactcgaccagccccaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51507069 |
tgatcttcaaaatcatcttccaacaatgttttataccattggctggacccaaatgatgataacatttgagcagctggctgacagactcgaccagccccaa |
51507168 |
T |
|
| Q |
111 |
gaatcaaaactgcagccttcttttttggatcagattcattctccatgccgttctcttgaactttaccaagcgtaagtgaaattttacttgaattttgatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51507169 |
gaatcaaaactgcagccttcttttttggatcagattccttctccatgccgttctcttgaactttaccaagcgttagtgaaattttacttgaattttgatt |
51507268 |
T |
|
| Q |
211 |
tgaaaatctattattttcagttggattagcaggagaggttaaagaatcaatgatttgatccagaacagccttatcatctgcaccaacctgttgaaaacat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51507269 |
tgaaaatctattattttcagttggattagcaagagaggttaaagaatcaatgatttgatccagaacagccttatcatctgcaccaacctgttgaaaacat |
51507368 |
T |
|
| Q |
311 |
agcttgttgttataatattaattattatcataagttcaataagtcgattaaaaaatcgtaagcatattttccattnnnnnnnnnngactagaaagcaaag |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51507369 |
agcttgttgttataatattaattattatcataagttcaataagtcgattaaaaaatcgtaagcatattttccatt-aaaaaaaaagactagaaagcaaag |
51507467 |
T |
|
| Q |
411 |
agtatcaagccaaatggtccatccc |
435 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
51507468 |
agtatcaagccaaatggtccatccc |
51507492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University