View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_low_1 (Length: 761)
Name: NF5962_low_1
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 632; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 10 - 744
Target Start/End: Original strand, 54862113 - 54862850
Alignment:
| Q |
10 |
agatgaaagtgatggtgtattagatatataatggatgggaccctagtttttcaaatccttggtaggagcagaataaactcttgacaatggtctgaaagtt |
109 |
Q |
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| T |
54862113 |
agatgaaagtgatggtgtattagatatataatggacgggactctggtttttcaaatccttggtaggagcagaataaactct-gacaatggtctgaaagtt |
54862211 |
T |
|
| Q |
110 |
tgtcaatggttggagtaatcatcactgtttccctaggtagtgaaggatgtgtttctttttgttatctgcaatcattttgtgatgtagattctccatatat |
209 |
Q |
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| T |
54862212 |
tgtcaatggttggagtaatcatcactgtttccctaggtagtggaggatgtgtttctttttgttatctgtaattattttgtgatgtagattctccatatat |
54862311 |
T |
|
| Q |
210 |
cctcatcgggtccttgttcatactcagacttttgtcaagtagcttgacttgtttacaactacaaccagtatacacattaagactttctattctccggtga |
309 |
Q |
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| T |
54862312 |
cctcatcgggtccttgttcatactcagacttttgtcaagtagcttgacttgtttacaactacaaccagtatacacattaagactttctattctccggtga |
54862411 |
T |
|
| Q |
310 |
caaaattgttgttagtcannnnnnnnnn----gggttaacatgatattattatgaaattttaccaccgtttaacggtgattaatctccgtctgggaactt |
405 |
Q |
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| T |
54862412 |
caaaattgttgttagtcgttttttttttttttgggttaacatgatattagtatgaaattttaccaccgtttaacggtgattaatctccgtctgggaactt |
54862511 |
T |
|
| Q |
406 |
gtgggacacacaaggtgggttcttgtttctcaactgaattttttccatatgtccacaaatcccttaccacttgaatcaatctattattagttgttgttag |
505 |
Q |
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| T |
54862512 |
gtggggcacacaagatgggttcttgcttctcaactgaattttttccatatgtccacaaatcccttaccacttgaatcaatctattattagttgttgttag |
54862611 |
T |
|
| Q |
506 |
tcgtatttctataacaccatatttgataataaatttataaaagtaattgcaatttccgagaatcaaacaagtatgtggcaaccttataagttgatacata |
605 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54862612 |
tcgtatttctataacaccatatttgataatcaatttataaaagtaattgcaatttccgagaatcaaacaagtatgtggcaaccttataagttgatacata |
54862711 |
T |
|
| Q |
606 |
attccgattttacttgacatggttgcgaatttgatccagacttatagagcatctctagcctggagagatcattgaaattctcattccattctattctagt |
705 |
Q |
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| T |
54862712 |
attcctattttacttgacatggttgcgaatttgatccagacttatagagcatctctagcctggagagatcattgaaattctcattccattctattctagt |
54862811 |
T |
|
| Q |
706 |
gtcccatgaaaatttgaaatcacccttggacaaaaagat |
744 |
Q |
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| T |
54862812 |
gtcccatgaaaatttgaaatcacccttggacaaaaagat |
54862850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 104 - 264
Target Start/End: Original strand, 54857374 - 54857537
Alignment:
| Q |
104 |
aaagtttgtcaatggttggagtaatcatcactgtttccctaggtagtgaaggatgtgtttctttttgttatctgcaatcatttt---gtgatgtagattc |
200 |
Q |
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|||||||||| |||||| ||||| |||| | |||||||| || |||| |||||||||||||||| |||| || ||| ||| | ||||||||| ||| |
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| T |
54857374 |
aaagtttgtcgatggtttgagtatccatcccagtttcccttggaagtggaggatgtgtttctttta-ttatatgtaattattattatgtgatgtagtttc |
54857472 |
T |
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| Q |
201 |
tccatata-tcctcatcgggtccttgttcatactcagacttttgtcaagtagcttgacttgttta |
264 |
Q |
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| T |
54857473 |
tccatctaatccccatcgggtccttgttcatactcagacttttgtgaattagcttgacttattta |
54857537 |
T |
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