View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5962_low_10 (Length: 420)

Name: NF5962_low_10
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5962_low_10
NF5962_low_10
[»] chr8 (2 HSPs)
chr8 (15-407)||(14082365-14082758)
chr8 (16-44)||(14654211-14654239)
[»] scaffold0010 (1 HSPs)
scaffold0010 (15-55)||(123346-123386)
[»] chr4 (3 HSPs)
chr4 (15-55)||(9161220-9161260)
chr4 (15-55)||(24251849-24251889)
chr4 (15-55)||(32113100-32113140)
[»] chr7 (2 HSPs)
chr7 (15-55)||(27400714-27400754)
chr7 (21-56)||(778940-778975)
[»] chr5 (1 HSPs)
chr5 (15-55)||(21374620-21374660)
[»] chr6 (1 HSPs)
chr6 (18-55)||(12697192-12697229)
[»] chr2 (2 HSPs)
chr2 (19-55)||(19937444-19937480)
chr2 (19-56)||(34314923-34314960)
[»] scaffold0015 (1 HSPs)
scaffold0015 (17-55)||(80884-80922)
[»] chr1 (2 HSPs)
chr1 (17-55)||(19453851-19453889)
chr1 (15-49)||(31160576-31160610)


Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Complemental strand, 14082758 - 14082365
Alignment:
Q  15 aatactaaaccctaatatcgattattgtacttttgcaagtatggttgtaaataccaccctttagtgatgattaatgaaatttcatactcttaaccaaact 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14082758 aatactaaaccctaatatcgattattgtacttttgcaagtatggttgtaaataccaccctttagtgatgattaatgaaatttcatattcttaaccaaact 14082659  T
Q  115 tcaaattcaatattgaaatcacaatataattcataaccatcgaaatcaattaaaaatcaacatgtaaatcaaatacctttttgtatataacttctttgtc 214  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14082658 tcaaattcaatattgaaatcacaatataattcatacccatcgaaatcaattaaaaatcaacatgtaaatcaaatacctttttgaatataacttctttgtc 14082559  T
Q  215 ccatctgttaactgtctcttggaaaactttgaattaggtgaatttgcaagaaataggtc-aatcacaaactactctgcaatatagaaagtcaacaaatga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14082558 ccatctgttaactgtctcttggaaaactttgaattaggtgaatttgcaagaaataggtcaaatcacaaactactctgcaatatagaaagtcaacaaatga 14082459  T
Q  314 agtgataacttggtaacattagagttagtggatccctccatttatacatagagaaacaatgcaattaatggggtaaatacaccctataattgat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14082458 agtgataacttggtaacattagagttagtggatccctccatttatacatagagaaacaatgcaattaatggggtaaatacaccctataattgat 14082365  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 14654239 - 14654211
Alignment:
Q  16 atactaaaccctaatatcgattattgtac 44  Q
    |||||||||||||||||||||||||||||    
T  14654239 atactaaaccctaatatcgattattgtac 14654211  T

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Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 123386 - 123346
Alignment:
Q  15 aatactaaaccctaatatcgattattgtacttttgcaagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  123386 aatactaaaccctaatatcgattattgtacttttgcaagta 123346  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 9161220 - 9161260
Alignment:
Q  15 aatactaaaccctaatatcgattattgtacttttgcaagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9161220 aatactaaaccctaatatcgattattgtacttttgcaagta 9161260  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 24251889 - 24251849
Alignment:
Q  15 aatactaaaccctaatatcgattattgtacttttgcaagta 55  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  24251889 aatactaaaccctaatatcgattgttgtacttttgcaagta 24251849  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 32113100 - 32113140
Alignment:
Q  15 aatactaaaccctaatatcgattattgtacttttgcaagta 55  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  32113100 aatactaaaccttaatatcgattattgtacttttgcaagta 32113140  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 27400714 - 27400754
Alignment:
Q  15 aatactaaaccctaatatcgattattgtacttttgcaagta 55  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  27400714 aatactgaaccctaatatcgattattgtacttttgcaagta 27400754  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 778975 - 778940
Alignment:
Q  21 aaaccctaatatcgattattgtacttttgcaagtat 56  Q
    |||||||||||||||||||||| |||||||||||||    
T  778975 aaaccctaatatcgattattgttcttttgcaagtat 778940  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 21374660 - 21374620
Alignment:
Q  15 aatactaaaccctaatatcgattattgtacttttgcaagta 55  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  21374660 aatactaaactctaatatcgattattgtacttttgcaagta 21374620  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 12697229 - 12697192
Alignment:
Q  18 actaaaccctaatatcgattattgtacttttgcaagta 55  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12697229 actaaaccctaatatcaattattgtacttttgcaagta 12697192  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 19937480 - 19937444
Alignment:
Q  19 ctaaaccctaatatcgattattgtacttttgcaagta 55  Q
    |||||||||||||| ||||||||||||||||||||||    
T  19937480 ctaaaccctaatattgattattgtacttttgcaagta 19937444  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 34314960 - 34314923
Alignment:
Q  19 ctaaaccctaatatcgattattgtacttttgcaagtat 56  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  34314960 ctaaaccctaatattgattattgtatttttgcaagtat 34314923  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 80922 - 80884
Alignment:
Q  17 tactaaaccctaatatcgattattgtacttttgcaagta 55  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  80922 tactaaaccctaatatcgattattgtactcctgcaagta 80884  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 19453889 - 19453851
Alignment:
Q  17 tactaaaccctaatatcgattattgtacttttgcaagta 55  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  19453889 tactaaacccgaatatctattattgtacttttgcaagta 19453851  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 31160576 - 31160610
Alignment:
Q  15 aatactaaaccctaatatcgattattgtacttttg 49  Q
    ||||||||||||||||||| |||||||||||||||    
T  31160576 aatactaaaccctaatatcaattattgtacttttg 31160610  T

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