View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_low_11 (Length: 396)
Name: NF5962_low_11
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_low_11 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 1160024 - 1160422
Alignment:
| Q |
1 |
aaacagaagcaactaaacatgatacttaattagctgtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacacaaac |
100 |
Q |
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| T |
1160024 |
aaacagaagcaactaaacatgatacttaattag---tggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacacaaac |
1160120 |
T |
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| Q |
101 |
atgaaggtgtttgtgttcataattgtgcccgtgattggcgactgcaccaccaaccactccaccagcaactccaccagccactgcaccgccgataattcct |
200 |
Q |
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| T |
1160121 |
atgaaggtgtttgtgtccataattgtgcccgtgattggcgactgcaccaccaaccactccaccagcaactccaccagccactgcaccgccgataattcct |
1160220 |
T |
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| Q |
201 |
gcagctgctccacctgaccttcctctaccaattcctcttcctcccattccacttccatggccacctgaacctccatg------tcctcctcctccctttc |
294 |
Q |
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| T |
1160221 |
gcagctgctccacctgaccttcctctaccaattcctcttcctcccattccacttccatggccacctgaacctccatgtcctcctcctcctcctccctttc |
1160320 |
T |
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| Q |
295 |
ttatagtaacagatagttcatgtttgtgtgcattttgaccttcctcaaacccatctctgtggttcaaccttgtagatgcctcaatatttccatttccatc |
394 |
Q |
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| T |
1160321 |
ttatagtaacagatagttcatgtttgtgtgcattttgactttccacaaacccatctttgtggttcaaccttgtagatgcctcaatatttccatttccatc |
1160420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 1141671 - 1141737
Alignment:
| Q |
36 |
gtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacacaaacat |
102 |
Q |
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| T |
1141671 |
gtggaagtgaaacaatatgattataaccaaaagctcaaacataaaataaatgttgagacacaaacat |
1141737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 396
Target Start/End: Original strand, 1137266 - 1137377
Alignment:
| Q |
282 |
cctcctccctttcttatagtaacagatagttcatgtttgtgtgcattttgaccttcctcaaacccatctctgtggttcaaccttgtagatgcctcaatat |
381 |
Q |
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| T |
1137266 |
cctcctccttttcttatggtaacagatagttcatgtttgtgttcatt---actttccatcatcgcaactctgtggttcaacctagtagagacttctatgt |
1137362 |
T |
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| Q |
382 |
ttccatttccatcta |
396 |
Q |
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| T |
1137363 |
ttccatttccatcta |
1137377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 1141865 - 1141912
Alignment:
| Q |
281 |
tcctcctccctttcttatagtaacagatagttcatgtttgtgtgcatt |
328 |
Q |
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| T |
1141865 |
tcctcctccttttcttatggtaacagatagttcatgtttgtgttcatt |
1141912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 1137017 - 1137083
Alignment:
| Q |
36 |
gtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacacaaacat |
102 |
Q |
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| T |
1137017 |
gtggaagtgaaacaatgtaattaaagccaaaagctcaaacataaaagaaatgttgagacacaaacat |
1137083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 1172323 - 1172360
Alignment:
| Q |
285 |
cctccctttcttatagtaacagatagttcatgtttgtg |
322 |
Q |
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| T |
1172323 |
cctccctttcttatagtaagagatagttcatgtttgtg |
1172360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 1133696 - 1133733
Alignment:
| Q |
285 |
cctccctttcttatagtaacagatagttcatgtttgtg |
322 |
Q |
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| T |
1133696 |
cctccttttcttacagtaacagatagttcatgtttgtg |
1133733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 1164962 - 1165002
Alignment:
| Q |
282 |
cctcctccctttcttatagtaacagatagttcatgtttgtg |
322 |
Q |
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| T |
1164962 |
cctcctccctttcttatagtatgggatagttcatgtttgtg |
1165002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 362
Target Start/End: Complemental strand, 15612657 - 15612581
Alignment:
| Q |
286 |
ctccctttcttatagtaacagatagttcatgtttgtgtgcattttgaccttcctcaaacccatctctgtggttcaac |
362 |
Q |
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| T |
15612657 |
ctccctttcttatagtagcagatagatcatgattgcgttcattttaactttcctcaatcacatctttgttgttcaac |
15612581 |
T |
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