View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5962_low_12 (Length: 390)
Name: NF5962_low_12
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 6265795 - 6266145
Alignment:
| Q |
1 |
ttgtcttagattttccaccaaattttaatgaaatatacattttgaaggatcctatatatcaagtacaccccttcatattcttactcaatttttctttttg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6265795 |
ttgtctaagattttccaccaaattttaatgaaatatacattttgaaggatcctatatatcaagtacaccccttcatattcttactcaatttttctttttg |
6265894 |
T |
|
| Q |
101 |
tacatttcaaatatcaaaaattgtttcaaacaccaacttttaattgttttgcgaatcatgagttttcatctcaagtattcttgttttattgtttgatgct |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6265895 |
tacatttcaaatatcaaaaattgttccaaacgccaacttttaattgttctgcgaatcatga-ttttcatctcaagtattctcgttttattgtttgatgct |
6265993 |
T |
|
| Q |
201 |
ctaatttctgaacttttggatggagaagattaaatcgtccaaatttttgcagtggaatgtgttgtagatggacaagatatcaatttcttttagttgtgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6265994 |
ctaatttctgaacttttggatggagaagatcaaatcgtccaaatttttgcagtggaatgtgttgtagatagacaagatatcaatttcttttagttgtgaa |
6266093 |
T |
|
| Q |
301 |
tttctccttcattttggaagatcttgattgatgaaaaatatgaagatttaag |
352 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6266094 |
tttctccctcattttggaagatcttgattgatgaaaaatatgaagatctaag |
6266145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 6256222 - 6256321
Alignment:
| Q |
239 |
ccaaatttttgcagtggaatgtgttgtagatggacaagatatcaatttcttttagttgtgaatttctccttcattttggaagatcttgattgatgaaaaa |
338 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| ||||| |||||| |||||| | | |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6256222 |
ccaaattttggcagtagaaggtgttgtagatggagaagatcccaattt-ttttagatataaatttctctctcattttggaagatcttgattgatgaaaaa |
6256320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 6235414 - 6235494
Alignment:
| Q |
171 |
tcaagtattcttgttttattgtttgatgctctaatttctgaacttttggatggagaagattaaatcgtccaaatttttgcagt |
253 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||| ||||| |
|
|
| T |
6235414 |
tcaaatattcttgtttt--tgtttgatgctctaatttctgaactttttgatggagaagatcaaatagcccaaattttggcagt |
6235494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 6235175 - 6235268
Alignment:
| Q |
69 |
cccttcatattcttact-caatttttctttttgtacatttcaaatatcaaaaattgtttcaaacaccaacttttaattgttttgcgaatcatga |
161 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||| || |||||| |||| ||||||||||| |||| ||||||||||| || ||||||||| |
|
|
| T |
6235175 |
cccttcatattcttactacactttttttttttgtatatatcaaatgctaaaatttgtttcaaacgccaaattttaattgttatgtgaatcatga |
6235268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 6235546 - 6235586
Alignment:
| Q |
299 |
aatttctccttcattttggaagatcttgattgatgaaaaat |
339 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
6235546 |
aatttctccctcatttcggaagatcttgattgatgaaaaat |
6235586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 6275662 - 6275726
Alignment:
| Q |
167 |
catctcaagtattct-tgttttattgtttgatgctctaatttctgaacttttggatggagaagat |
230 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||| ||||| | ||||||| |||||||||||| |
|
|
| T |
6275662 |
catctcaaatattctatgttttatagtttgatgctaaaatttatcaactttttgatggagaagat |
6275726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University