View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_low_13 (Length: 390)
Name: NF5962_low_13
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 26788110 - 26787723
Alignment:
| Q |
8 |
aagcaaaggcgggaaaacaagtaccttttgcgcgccatatctcgcagttacatcttcattcatactctcgtcctcctcactcacttcttcattttccatt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |
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| T |
26788110 |
aagctaaggcgggaaaacaagtaccttttgcgcgccatatctcgcagttacatcttcattcatactcttgtcctc---actcacttcttcattt-ccatt |
26788015 |
T |
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| Q |
108 |
ttccattcccgcgttttctcaaaaccaatccatggcttccgattccactccaa-tggattccaataa-tggttcgtaactttcgtttcatctccacattc |
205 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
26788014 |
ttccattcgcgcgttttctcaaaaccaatccatggcttccgattccactccaagtggattccaacaagtggttcgtaactttcgtttcatctccacattc |
26787915 |
T |
|
| Q |
206 |
ttattctaatttctaatttc-------aattttctgaaaccctatttttcacttttcaggtccttcttcaccggacaactccaattcaagtccaatcgcc |
298 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26787914 |
ttattctaatttctaatttctaatttcaattttctgaaaccctatttttcacttttcaggtccttcttcaccggacaactccaattcaagtccaatcgcc |
26787815 |
T |
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| Q |
299 |
aacacctactcctcccccggccgccgtcgccgccgtcaatcaatcactccatctggaactcctcaaccgaacagatctcgcttcgcttcctc |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26787814 |
aacacctactcctcccccggccgccgtcgccgccgtcaatcaatcactccatctggaactcctcaaccgaacagatctcgcttcgcttcctc |
26787723 |
T |
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