View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_low_16 (Length: 371)
Name: NF5962_low_16
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 4306402 - 4306756
Alignment:
| Q |
18 |
gagaaaatgctaaatgacaaaaacaccaagaatgtgaatgctttattacaagaataccctttggagacctttttaccaaaaagaagcaaaacaaagtaag |
117 |
Q |
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| T |
4306402 |
gagaaaatgctaaatgacaaaaacaccaagaatgtgaatgctttattacaagaataccctttggagacctttataccaaaaagaagcaaaacaaagtaag |
4306501 |
T |
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| Q |
118 |
aagcaacaataattaaaaaaggcctgaatatggaagaagggtagtgaagtgatagtaaaagcaaatatatatgtaatgtaaggagtggggtgggtggtgg |
217 |
Q |
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| T |
4306502 |
aagcaacaataattaaaaaaggcctgaatatggaagaagggtagtgaagtgatagtaaaagcaaatatatatgtaatgtaaggagtggggtgggtggtgg |
4306601 |
T |
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| Q |
218 |
gaggggacaagaacccattatgaacaaacgtctttacacacataacatgaaaagatcccttgacaatggggcatgcagcagcaaagccatatcgttagga |
317 |
Q |
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| T |
4306602 |
gaggggacaagaacccattatgaacaaacgtctttacacacataacatgaaaagatcccttgacaatggggcatgcagcagcaaagccatatcgttagga |
4306701 |
T |
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| Q |
318 |
c-nnnnnnnnggatatattatcatgcaacacaatactgcaggcagaacaaggtaa |
371 |
Q |
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| T |
4306702 |
ctttttttttggatatattatcatgcaacacaatactgcaggcagaacaaggtaa |
4306756 |
T |
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