View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_low_2 (Length: 736)
Name: NF5962_low_2
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 23 - 412
Target Start/End: Complemental strand, 3018516 - 3018130
Alignment:
| Q |
23 |
aatttagtgtggaaattaccaaagcctctaaatcattagttatacaatgattggcttgatattattagattactatgtttcacnnnnnnnnntcactagc |
122 |
Q |
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| T |
3018516 |
aatttagtgtggaaattaccaaagcctctaaatcattagttatacaatgattggcttgatattattagattactatgtttcacaaaaaaaaatcactagc |
3018417 |
T |
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| Q |
123 |
tctacagcttaggctttaggatgttccaatgcgacacaattttaaagagcaaacactcattttagttcttttggtaacactgaaattgtaaaagttattg |
222 |
Q |
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| T |
3018416 |
tctacagcttaggctttaggatgttccaatgcgacacaattttaaagagcaaacactcattttagttcttttggtgacactgaaattgtaaaagttattg |
3018317 |
T |
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| Q |
223 |
agcatatgctgcattctagtttcccatgtcccaaattcacatgaattttctgaagctagataggataattcaattctacgtt--nnnnnnnnnnnngcta |
320 |
Q |
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| T |
3018316 |
agcatatgctgcattctagtttcccatgtcccaaattgacatgaa-----tgaagctagataggataattcaattctacgttaaaaaaaaaaaaaaccta |
3018222 |
T |
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| Q |
321 |
gtttggtatattttcagcgagtgtgacatttataaaatcacagtgacccattctcttaaagtgttacaatggtttctcaaagaagagaaatc |
412 |
Q |
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| T |
3018221 |
gtttggtatattttcagcgagtgtgacatttataaaattacagtgacccattctcttaaagtgttacaatggtttctcaaagaagagaaatc |
3018130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 486 - 720
Target Start/End: Complemental strand, 3018056 - 3017804
Alignment:
| Q |
486 |
ggcacaggcaatagttttccatggaatacattcataattagtgtcactctacgcacaaaaatatcatgaaacagaatcctataaaatcatacctcacatt |
585 |
Q |
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| T |
3018056 |
ggcacaggcaatagttttccatggaatacattcataattagtgtcactctacgcacaaaaatatcatgaaacagaatcctataaaatcatacctcacatt |
3017957 |
T |
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| Q |
586 |
tgtcgtattttcttcaa------------------aattttcgtattagaccatctgattgcaaagnnnnnnnaagacgccaaaaacaaaattgatcaaa |
667 |
Q |
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| T |
3017956 |
tgtcgtattttcttcaaaatgaaaaacaatttaacaattttcgtattagaccatctgattgcaaagtttttttaagaggccaaaaacaaaattgatcaaa |
3017857 |
T |
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| Q |
668 |
acctttctaataagtacaagaagtgtgtctagaaggatacaaaatgtatatac |
720 |
Q |
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| T |
3017856 |
acctttataataagtacaagaagtgtgtctagaaggatacaaaatgtatatac |
3017804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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