View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5962_low_20 (Length: 307)
Name: NF5962_low_20
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 27 - 291
Target Start/End: Complemental strand, 37961532 - 37961268
Alignment:
| Q |
27 |
caccaaccattctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37961532 |
caccaaccattctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatca |
37961433 |
T |
|
| Q |
127 |
tttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37961432 |
tttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcc |
37961333 |
T |
|
| Q |
227 |
cataacaccgatccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatc |
291 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37961332 |
caaaacaccgatccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatc |
37961268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 291
Target Start/End: Original strand, 37906556 - 37906800
Alignment:
| Q |
50 |
ttcttcgacataccatggttttattgtcacccaa---ttcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttc |
146 |
Q |
| |
|
||||||||||| |||||||||| ||||| || | || ||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
37906556 |
ttcttcgacatttcatggttttactgtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttc |
37906655 |
T |
|
| Q |
147 |
ccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacat |
246 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| | ||||||||| || || |||| ||||||||| |||||||||||||||||||||| ||||| ||| |
|
|
| T |
37906656 |
ctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcat |
37906755 |
T |
|
| Q |
247 |
acgttacctcgatgaagactctatctccttcaccgtagctgaatc |
291 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
37906756 |
acgttaccttgatgaagactctatttccttcactgtagctgaatc |
37906800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 87 - 291
Target Start/End: Original strand, 37914759 - 37914963
Alignment:
| Q |
87 |
aacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacactt |
186 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||| | |||||| |
|
|
| T |
37914759 |
aacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacactt |
37914858 |
T |
|
| Q |
187 |
cttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctatctccttcaccgtagct |
286 |
Q |
| |
|
||| || || |||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
37914859 |
ctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatctccttcaccatagct |
37914958 |
T |
|
| Q |
287 |
gaatc |
291 |
Q |
| |
|
||||| |
|
|
| T |
37914959 |
gaatc |
37914963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 3782807 - 3782967
Alignment:
| Q |
29 |
ccaaccattctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatt |
128 |
Q |
| |
|
||||||||||| ||| | || ||||| ||||| |||||||||| |||| | ||| |||| |||||||||||||| |||||||||||||||||||| | |
|
|
| T |
3782807 |
ccaaccattcttcccctcacattcttggacattccatggttttgctgtcgaaccattaaacgcatcttcttctaccactttcctcatccaactcatcact |
3782906 |
T |
|
| Q |
129 |
tccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttctt |
189 |
Q |
| |
|
| || ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
3782907 |
ttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaacacttctt |
3782967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 4957855 - 4957761
Alignment:
| Q |
110 |
cctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaa |
204 |
Q |
| |
|
|||||| |||| || || ||||||||||| |||| || ||||||||| |||| |||||| | || |||| ||| ||||||||||| |||||||| |
|
|
| T |
4957855 |
cctcattcaacacaacacttccttcaaacttcactaccaattctcaaaaactctctttccctcactctccaacatttcttccctttctcctctaa |
4957761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University