View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_low_25 (Length: 238)
Name: NF5962_low_25
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 54693000 - 54692823
Alignment:
| Q |
45 |
ggcaaagaaattcttgatatctagaaattaaggtagtgaaaaaggccatttccaaagccttgacaaatttgaaggacactaccaaatattataacatctt |
144 |
Q |
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| T |
54693000 |
ggcaaagaaattcttgatatctagaaattaaggtagtgaaaaaggccatttccaaagccttgacaaatttgaagggcactaccaaatattataacatctt |
54692901 |
T |
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| Q |
145 |
gtctacaaacaaagaccatcaatcagtgaagtgacattgattaacttattacaagatgttgaattggctacactatct |
222 |
Q |
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| T |
54692900 |
gtctacaaacaaagaccatcaatcagtgaagtgacattgattaacttattacaagatgttgaattggctacactatct |
54692823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 54700380 - 54700181
Alignment:
| Q |
14 |
gaaggggaggtggattggagctcacagcagaggcaaagaaattcttgatatctagaaattaaggtagtgaaaaaggccatttccaaagccttgacaaatt |
113 |
Q |
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| T |
54700380 |
gaaggggagatggattggagctcactgcagaggctaagaaattcatgacatcaagaaa----ggtagtgaaaaaggccatctccaaagccttggcaaatt |
54700285 |
T |
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| Q |
114 |
tgaaggacactaccaaatattataacatcttgtctacaaacaaagaccatcaatcagtgaagtgacattgattaacttattacaagatgttgaattggct |
213 |
Q |
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| T |
54700284 |
tgaagggaaataccaaacatagcaacatcttatctacaaacaatgaccatcaaac-----agtggctttgattagcttattacaagatgttgaagtggca |
54700190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 54688379 - 54688236
Alignment:
| Q |
74 |
aaggtagtgaaaaaggccatttccaaagccttgacaaatttgaaggacactaccaaatattataacatcttgtctacaaacaaagaccatcaatcagtga |
173 |
Q |
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| T |
54688379 |
aaggtagtgagaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaac----- |
54688285 |
T |
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| Q |
174 |
agtgacattgattaacttattacaagatgttgaattggctacactatct |
222 |
Q |
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| T |
54688284 |
agtggctttgattaacttattacaagatgttgaagtggcaaccctatct |
54688236 |
T |
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