View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_low_3 (Length: 671)
Name: NF5962_low_3
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 236 - 654
Target Start/End: Complemental strand, 3019441 - 3019011
Alignment:
| Q |
236 |
taattagattttagagaaaccctagaatgggaaatccatgttatgttcactacatgctgctttatgtgacaaaaagtttgaatctacacacgttttcttc |
335 |
Q |
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| T |
3019441 |
taattagattttagagaaaccctagaatgggaaatccatgttatgttcactacatgctgctttatgtgacaaaaagtttgaatctacacacgttttcttc |
3019342 |
T |
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| Q |
336 |
ttcttggacattatgtaatgtaactaaccactcttcatgtccttcaatgcctttatatttatttaatcatgttatgttagatccattttctttgtctcaa |
435 |
Q |
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| T |
3019341 |
ttcttggtcattatgtaatgtaactaaccactcttcatgtccttcaatgcctttatatttatttaatcatgttatgttagatccattttctttgtctcaa |
3019242 |
T |
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| Q |
436 |
tgaatcatgtgagtgatctttgttcatcatacatgatgataaggattctttcatgtgcgtgtcccgtactcttctccaatcctcactcatagtactacta |
535 |
Q |
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| T |
3019241 |
tgaatcatgtgagtgatctttgttcatcatacatgatgataaggatcctttcatgtgcgtgtcccgtactcttctccaatcctcactcatagtactacta |
3019142 |
T |
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| Q |
536 |
tatgtaatgtaactgtaa------------tattattatcattcattgagtatcacacatggaggttaagctttgcaaagacaagcaccaaagagaaatg |
623 |
Q |
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| T |
3019141 |
tatgtaatgtaactgtaataatattattattattattatcattcattgagtatcacacatggaggttaagatttgcaaagacaagcaccaaagagaaatg |
3019042 |
T |
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| Q |
624 |
gtggataaatttgctcaagtactctatgcca |
654 |
Q |
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| T |
3019041 |
gtggataactttgctcaagtactctatgcca |
3019011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 3019666 - 3019598
Alignment:
| Q |
13 |
gtgtaatgtaatgttaatgtaattgaaccacgccactcaactcacatcatatccattgattcaaatcca |
81 |
Q |
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| T |
3019666 |
gtgtaatgtaatgttaatgtaattgaaccacgccactcaactcacatcatatccattgattcaaatcca |
3019598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 3019575 - 3019536
Alignment:
| Q |
104 |
tcatttcattccattccatctaacatatctaactactact |
143 |
Q |
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| T |
3019575 |
tcatttcattccattccatctaacatatctaactactact |
3019536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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