View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5963_high_3 (Length: 381)
Name: NF5963_high_3
Description: NF5963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5963_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 6486367 - 6486616
Alignment:
| Q |
10 |
gacatcatcattggtgagccctcaccacttaatctgaattccaaatttcaaattaattataagttagcaacgattaattttaggatacaataacatttta |
109 |
Q |
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| T |
6486367 |
gacatcatcattggtgagccctcaccacttaatctgaattccaaatttcaaattaattataagttagcaacgattaattttaggatacaataacatttta |
6486466 |
T |
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| Q |
110 |
tttagatttggattctctgtatggtgcagcacattgcagagccgtttgtgaactcaaattcagtttacatcaaatggttctgcagcgaactgcaccatgt |
209 |
Q |
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| T |
6486467 |
tttagatttggattctctgtatggtgcagcacattgcagagccgtttgtgaactcaaattcagtttacatcaaacggttctgcagcgaactgcaccatgt |
6486566 |
T |
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| Q |
210 |
tcatgcaaagaatccaaatagctcgtctagtgagctaagggtcatcgaac |
259 |
Q |
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| T |
6486567 |
acatgcaaagaatccaaatagctcgtctagtgagctaagggtcatcgaac |
6486616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 6486678 - 6486717
Alignment:
| Q |
320 |
ggagagaccttccagggtcgtagtagtaagggctcatggg |
359 |
Q |
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| T |
6486678 |
ggagagaccttccagggtcgtagtagtaagggctcatggg |
6486717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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