View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5963_low_2 (Length: 652)
Name: NF5963_low_2
Description: NF5963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5963_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 461 - 635
Target Start/End: Original strand, 23144875 - 23145049
Alignment:
| Q |
461 |
ggaagtgtatctagtgttgagtgaactggagttagatgttgtggaatcggctaagaatgtttgaaatccattaatccctcagaaggtatcggtgttaatt |
560 |
Q |
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| T |
23144875 |
ggaagtgtatctagtgttgagtgaactggagttagatgttgtggaatcggctaagaatgtttgaaatccattaatccctcagaaggtatcggtgttgatt |
23144974 |
T |
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| Q |
561 |
gggaggcttttgcaaaataggcttcccactaaagataatctttgtttgaaagggataagagataatgcatctact |
635 |
Q |
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| T |
23144975 |
gggaggcttttgcaaaataggcttcccactaaagataatctttgtttgaaagggataagagataatgcatctact |
23145049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 56 - 313
Target Start/End: Original strand, 23144440 - 23144696
Alignment:
| Q |
56 |
gtacaacttagtttattaatttggaaaggagcatttacatttaggttttatggcattgccgtaatcgatgagctggttggtgtaatttttaatcgccccc |
155 |
Q |
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| T |
23144440 |
gtacaaattagtttattaatttggaaaggagcatttacatttaggttttatggcactgccataatcgaggagctggttggtgtaatttgtaatagccccc |
23144539 |
T |
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| Q |
156 |
acaacacatcgccctttaattccagttttctgatctttacaatcccctgaaagtgtaatcgacaagaaatttaatcttgcaaagcatattattcacaagg |
255 |
Q |
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| T |
23144540 |
acaacacatcgccccttaattccagttttctgatctttacaatcccctgaaagttaaatcgacaagaagtttaatcttgcaaagcatattattaataagg |
23144639 |
T |
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| Q |
256 |
agaactaagctagtgacatctttaactcatggttcaattagttcaatgaatttgacta |
313 |
Q |
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| T |
23144640 |
ag-attagactagtggcatcttcgactcatggttcgattagttcagtgaattttacta |
23144696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 393 - 467
Target Start/End: Original strand, 23144774 - 23144848
Alignment:
| Q |
393 |
ctgttgaatgaactatggttgaactcattaaaccttgatttaatctagttaaggaggcgttgatcgttggaagtg |
467 |
Q |
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| T |
23144774 |
ctgttgaatgaactatggttgaactcattaaaccttgatttaatctagttaaggaggcgttgatcgttggaagtg |
23144848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 23135419 - 23135471
Alignment:
| Q |
154 |
ccacaacacatcgccctttaattccagttttctgatctttacaatcccctgaa |
206 |
Q |
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| T |
23135419 |
ccacgacacatcgcccctttgttccagttttatgatctatacaatcccctgaa |
23135471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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