View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5963_low_7 (Length: 252)
Name: NF5963_low_7
Description: NF5963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5963_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 45138368 - 45138539
Alignment:
| Q |
6 |
atgatggtctaagaaaataaacnnnnnnngtgacaaaaacaatgatatcctatctatatgataaaatacgagaccatttgttctcatggtcttgagaaga |
105 |
Q |
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| T |
45138368 |
atgatggtctaagaaaataaacaaaaaaagtgacaaaaacaatgatatcctatctatatgataaaatacgagaccatttgttcgcatggtcttgagaaga |
45138467 |
T |
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| Q |
106 |
gtagcccattgataatcagataacaacctcattagaatctctcaggaactaacaccaatatacctccctcta |
177 |
Q |
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| T |
45138468 |
gtagcccattgataatcagataacaacctcattagaatctctctggaactaacaccaatatacctccctcta |
45138539 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 45138539 - 45138585
Alignment:
| Q |
196 |
atacaaaagaggagaggagagactggataaccttccttaatcctttg |
242 |
Q |
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| T |
45138539 |
atacaaaagaggagaggagagagtggataaccttccttaatcctttg |
45138585 |
T |
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