View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5964-Insertion-1 (Length: 990)
Name: NF5964-Insertion-1
Description: NF5964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5964-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 443 - 869
Target Start/End: Original strand, 39074854 - 39075286
Alignment:
| Q |
443 |
agtgtcggcacaaagttaatttgtgattaaacataaacattctaaatcacttcattttgaaaaattaaatatagttcatgggaggttacttgtataattt |
542 |
Q |
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| T |
39074854 |
agtgtcggcacaaagttaatttgtgattaaacatgaacattctaaatcacttcattttgaaaa-ttaaatatagttcatgggaggttacttttataattt |
39074952 |
T |
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| Q |
543 |
accataaccaaaatacttatcaataatgattaccttaaatcatgcaaatcttgggtctaatgtaccaaatatttt-----atttatttaacgaggcacaa |
637 |
Q |
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| T |
39074953 |
accataaccaaaatacttatcaataatgattaccttaaatcatgcaaatcttgggtctaatgtaccaaatattttatttaatttatttaacgaggcacaa |
39075052 |
T |
|
| Q |
638 |
actcctattttgttccctatatatagtataaactgtccttacatttcttcataaacaaagtaactctaccttccctgtttctttttgattaagggtagct |
737 |
Q |
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| T |
39075053 |
actcctattttgttccctatatatagtataaactgtccttacatttcttcataaacaaagtaactctaccttccctgtttc-ttttgattaagggtagct |
39075151 |
T |
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| Q |
738 |
caagaagttatggcagttccactctcatacatg---ctactctcattactactttttgtaccttccttcattcaatcttccccacttcaagatcctgaat |
834 |
Q |
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| T |
39075152 |
caagaagttatggcagttccactcacatacatgctactactctcattactactttttgtaccttccttcattcaatcttccccacttcaagatcctgaat |
39075251 |
T |
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| Q |
835 |
tagtagtccaagatgtacaaaagtaagaaactatt |
869 |
Q |
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| T |
39075252 |
tagtagtccaagatgtacaaaagtaagaaactatt |
39075286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 235 - 445
Target Start/End: Original strand, 39074605 - 39074815
Alignment:
| Q |
235 |
ttataatattagtaacacatggatgttggtgagggaatggcatgtaataaatgatgtttgtgttatgtttagaatgtatagaaacctacttcaacggcca |
334 |
Q |
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| T |
39074605 |
ttataatattagtaacacatggatgttggtgagggaatggcatgtaataaatgatgtttgtgttatgtttagaatgtatagaaacctacttcaacggcca |
39074704 |
T |
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| Q |
335 |
tggctgaaactatagtaataataatgagttgaaattcactaaggtgggggtgattggggtctacttggtgtaactgtaaaggccaaagagtatacacact |
434 |
Q |
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| T |
39074705 |
tggctgaaactatagtaataataatgagttgaaattcactaaggtgggggtgattggggtctacttggtgtaactgtaaaggccaaagagtatacacact |
39074804 |
T |
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| Q |
435 |
acatatatagt |
445 |
Q |
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| T |
39074805 |
acatatatagt |
39074815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 39074342 - 39074418
Alignment:
| Q |
167 |
tttgttgcaaatgttgaattgcagagggaaataaatttcaccacaaggaaatggaacaggatggattattataatat |
243 |
Q |
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| T |
39074342 |
tttgttgcaaatgttgaattgcagagggaaataaatttcaccacaaggaaatggaacaggatggattattataatat |
39074418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 39074204 - 39074299
Alignment:
| Q |
9 |
atcccatcactttgtaatgctctagataagccatcattaatcttttatataatgttcatttcataatgtctagtctaagacaagaaatatttagtattta |
108 |
Q |
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| T |
39074204 |
atcccatcactttgtaatgctctagataagccatcattaatcttttat--------------ataatgtctagtctaagacaagaaatatttagtattta |
39074289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 868 - 928
Target Start/End: Original strand, 39075307 - 39075370
Alignment:
| Q |
868 |
ttcattagtcacattactcattaccataccaca-ttattaatttt--gaaatctcaagtgtttt |
928 |
Q |
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| T |
39075307 |
ttcattagtcacattactcattaccataccacatttattaatttttgaaaatctcaagtgtttt |
39075370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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