View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5964-Insertion-2 (Length: 950)

Name: NF5964-Insertion-2
Description: NF5964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5964-Insertion-2
NF5964-Insertion-2
[»] chr6 (5 HSPs)
chr6 (253-719)||(32219498-32219966)
chr6 (714-920)||(32219326-32219534)
chr6 (9-153)||(32220102-32220246)
chr6 (486-561)||(10519863-10519936)
chr6 (487-550)||(9069774-9069837)
[»] chr7 (3 HSPs)
chr7 (642-827)||(20067720-20067905)
chr7 (869-920)||(20067659-20067710)
chr7 (715-776)||(8129342-8129403)
[»] chr4 (1 HSPs)
chr4 (486-614)||(44229534-44229662)
[»] chr1 (1 HSPs)
chr1 (486-624)||(51276211-51276348)
[»] chr8 (1 HSPs)
chr8 (487-551)||(24953449-24953512)
[»] chr3 (1 HSPs)
chr3 (269-306)||(12408770-12408807)
[»] chr2 (1 HSPs)
chr2 (684-721)||(28548326-28548363)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 253 - 719
Target Start/End: Complemental strand, 32219966 - 32219498
Alignment:
Q  253 caccaccaccaccattacactctctctccccctctgcaaatctccggccaccggagaccgtcgtctaccaccatcgttcttctctccaatctattttctc 352  Q
    ||||||||||||||||||||||| |||||||||||  |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32219966 caccaccaccaccattacactctttctccccctctttaaatctccagccactggagaccgtcgtctaccaccatcgttcttctctccaatctattttctc 32219867  T
Q  353 tgcnnnnnnn--cacatgaaaatacataagcacaacaatgcatcgacctgcgtgagaagtagacgacggctggagagagagacggtgaaggtcgtggtcg 450  Q
    |||         ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  32219866 tgcaaaaaaaaacacatgaaaatacataagcacaacaatacatcgacctgcgtgagaagtagacgacagcgggagagagagacggtgaaggtcgtggtcg 32219767  T
Q  451 gcggaggtggaggagttcatgatagatggtgacatagacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgag 550  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32219766 gcggaggtggaggaattcatgatagatggtgacatagatggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgag 32219667  T
Q  551 gacggcgtaatggttttctaacgagggtgatggtagtgacaagaatggaaggcgcggtggcaaggacagactgaaggtggtggtcgccggcgccgtgagt 650  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||| |    
T  32219666 gacgacgtaatggttttctaacgagggtgatggtagtgacgagaatggagggcacggtggcaaggacaaactgaaggtggtggccgccggcgccgtgaat 32219567  T
Q  651 ttcggatctaaacaacaaagggacaacgacgacggtggtggtcattaatgagggcggagggtgcggtgg 719  Q
    ||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  32219566 ttcagatctaaacagcaaagggacaacgacgacggtggtgctcattaacgagggcggagggtgcggtgg 32219498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 714 - 920
Target Start/End: Complemental strand, 32219534 - 32219326
Alignment:
Q  714 cggtggtggtcactaatgaaggcggagggtgcggtggcgattatggcggtggtggaagagggctacggcggtgaagacacaaagcatggtggaagaatag 813  Q
    |||||||| ||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||    
T  32219534 cggtggtgctcattaacgagggcggagggtgcggtggcgattatggcggtggtgggagagggctacgacggtgaggacacaaagcatggtggaagaatag 32219435  T
Q  814 agaaag-aaacaacacacagagaagagaggaaggagatatggtgttgtgtttttac-aaattgccctctgctttaagtttgaaatttccaaactgcccat 911  Q
    |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  32219434 agaaagaaaaaaacacacagagaagagaggaaggagatagggtgttgtgtttttacaaaattaccctctgctttaagtttgaaatttccaaactgcccat 32219335  T
Q  912 agtgtctgt 920  Q
    | |||||||    
T  32219334 aatgtctgt 32219326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 32220246 - 32220102
Alignment:
Q  9 ttcattaccctttatccacattgttcaaaatctaatgttggaataacatannnnnnnggaaagaaagaattggtccatgtattttaatttactcatagat 108  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  32220246 ttcattatcctttacccacattgttcaaaatctaatgtttgaataacatatttttttggaaagaaagaattggtccatgtattttaatttactcatagat 32220147  T
Q  109 ggcgaccatccattttcatggtagtgcatcttatgttcaacagaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32220146 ggcgaccatccattttcatggtagtgcatcttatgttcaacagaa 32220102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 486 - 561
Target Start/End: Complemental strand, 10519936 - 10519863
Alignment:
Q  486 agacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgaggacggcgtaat 561  Q
    ||||||||||||||||||  ||||| ||| ||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  10519936 agacggtggtgagaaagg--tgttccgatttgaaggggttggaggtcgatggcgacgttggtgaggacggcgtaat 10519863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 487 - 550
Target Start/End: Original strand, 9069774 - 9069837
Alignment:
Q  487 gacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgag 550  Q
    |||||||||||||| || ||||||||||||||||||||| ||||| || ||||||| |||||||    
T  9069774 gacggtggtgagaatggtgtgttcagatctgaagggattagaggttgacgacgacgttggtgag 9069837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 642 - 827
Target Start/End: Complemental strand, 20067905 - 20067720
Alignment:
Q  642 gccgtgagtttcggatctaaaca-ac-aaagggacaacgacgacggtggtggtcattaatgagggcggagggtgcggtggtggtcactaatgaaggcgga 739  Q
    |||||||||||||||||| |||| || |||||||||| ||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  20067905 gccgtgagtttcggatcttaacagactaaagggacaatgacgatggtggtggtcattaacgagggcggatggtgcagtggtggtcactaatgaaggcgga 20067806  T
Q  740 gggtgcggtggcgattatggcggtggtggaagagggctacggcggtgaagacacaaagcatggtggaagaatagagaaagaaacaaca 827  Q
    || || |||||||||||||| |||||||| || |||   ||| ||||| |  ||||||||||||||||||||||||| ||||| ||||    
T  20067805 ggatgtggtggcgattatggtggtggtgggagtgggaggcggtggtgagg--acaaagcatggtggaagaatagagagagaaaaaaca 20067720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 869 - 920
Target Start/End: Complemental strand, 20067710 - 20067659
Alignment:
Q  869 aaattgccctctgctttaagtttgaaatttccaaactgcccatagtgtctgt 920  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  20067710 aaattgccctctgctttaagtctgaaatttctaaactgcccatagtatctgt 20067659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 776
Target Start/End: Original strand, 8129342 - 8129403
Alignment:
Q  715 ggtggtggtcactaatgaaggcggagggtgcggtggcgattatggcggtggtggaagagggc 776  Q
    ||||||| |||||||||| | ||||||||||||||| ||| | ||||||||||  |||||||    
T  8129342 ggtggtgatcactaatgaggacggagggtgcggtggtgatgacggcggtggtgagagagggc 8129403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 486 - 614
Target Start/End: Original strand, 44229534 - 44229662
Alignment:
Q  486 agacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgaggacggcgtaatggttttctaacgagggtgatggta 585  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||||||||   ||||||| |  |  ||||| ||||||||    
T  44229534 agacggtggtgagaaagttgtgttcagatctgaaggggttggaggtcgatgacgacaatggtgaggacgatataatggtgtggtggcgaggatgatggta 44229633  T
Q  586 gtgacaagaatggaaggcgcggtggcaag 614  Q
    |||||||| | ||||||||||| ||||||    
T  44229634 gtgacaaggacggaaggcgcggcggcaag 44229662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 486 - 624
Target Start/End: Original strand, 51276211 - 51276348
Alignment:
Q  486 agacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgaggacggcgtaatggttttctaacgagggtgatggta 585  Q
    |||||||||||||||||  ||||||||||| |||||| ||| ||||||||||||||||||||||||||||  ||||||| |  |  ||||| ||||||||    
T  51276211 agacggtggtgagaaagttgtgttcagatccgaaggggttgaaggtcgatgacgacgatggtgaggacggtataatggtgtggtggcgaggatgatggta 51276310  T
Q  586 gtgacaagaatggaaggcgcggtggcaaggacagactga 624  Q
    |||||||| | ||| ||||||| ||||| ||||||||||    
T  51276311 gtgacaaggacggagggcgcggcggcaa-gacagactga 51276348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 487 - 551
Target Start/End: Original strand, 24953449 - 24953512
Alignment:
Q  487 gacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgagg 551  Q
    |||||||||||| | || ||||||||||||||| |||||||||||||| ||||| | ||||||||    
T  24953449 gacggtggtgaggacggcgtgttcagatctgaa-ggattggaggtcgaagacgatggtggtgagg 24953512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 12408807 - 12408770
Alignment:
Q  269 acactctctctccccctctgcaaatctccggccaccgg 306  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  12408807 acacactctctccccctctccaaatctccggccaccgg 12408770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 721
Target Start/End: Original strand, 28548326 - 28548363
Alignment:
Q  684 ggtggtggtcattaatgagggcggagggtgcggtggtg 721  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  28548326 ggtggtggtcactaatgaggacggagggtgcggtggtg 28548363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University