View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5964-Insertion-3 (Length: 881)
Name: NF5964-Insertion-3
Description: NF5964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5964-Insertion-3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 547
Target Start/End: Complemental strand, 34908732 - 34908193
Alignment:
| Q |
8 |
agtttgaacctaagacactgcgagaaacacataatgcagaggattcagaaggaagatgaggacgtgctgagaatgaggggaatcaaccaccacgaagatc |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34908732 |
agtttgaacctaagacactgcgaggaacacataatgcagaggattcagaaggaagatgaggacgtgctgagaatgaggggaatcaaccaccacgaagatc |
34908633 |
T |
|
| Q |
108 |
tcaaggagaagtgttgtgatcagcttaatgaagttaacaataaggaatgtaggtgcaatgctttgcaagagataatggagaatttgagtgataggttggg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34908632 |
tcaaggagaagtgttgtgatcagcttaatgaagttaacaataaggaatgtaggtgcaatgctttgcaagagataatggagaatttgagtgataggttgga |
34908533 |
T |
|
| Q |
208 |
aaagagggaaatgtatgagatggagagggagataaggaatttgcctaagaggtgtaatattccacaatcttctgagtgtgacttgagctttgatcagtac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34908532 |
aaagagggaaatgtatgagatggagagggagataaggaatttgcctaagaggtgtaatattccacaatcttctgagtgtgacttgagctttgatcagtac |
34908433 |
T |
|
| Q |
308 |
taaaatataagtaaggggtaatgtgatagcttaattattataatattaattaagctatccttctatgcttttgtaatgtaataaagatcattggagaaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34908432 |
taaaatataagtaaggggtaatgtgatagcttaattattataatattaattaagctatctttctatgcttttgtaatgtaataaagatcattggtgaaaa |
34908333 |
T |
|
| Q |
408 |
tgatcatgaaatgaaagcacatatggagagcgtgctttatcactcttttgtctatgttttgtttgttaatatatggactatgttgtttgaagttaaatca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
34908332 |
tgatcatgaaatgaaagcacatatggagagtgtgctttatcactcttttgtctatgttttgtttgttaatatatggactatgttgtttgaaattaaatca |
34908233 |
T |
|
| Q |
508 |
aaatctttgcttttgcaaatatattgcattttctctctaa |
547 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
34908232 |
aaatctttgcttttgcaaatttattggtttttctctctaa |
34908193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 609
Target Start/End: Complemental strand, 34902512 - 34901912
Alignment:
| Q |
11 |
ttgaacctaagacactgcgagaaacacataatgcagaggattcagaaggaagatgaggacgtgctgagaatgaggggaatcaaccaccacgaaga---tc |
107 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||| || |
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|
| T |
34902512 |
ttgaacctaaatcactgcgagaaacacctaatgcagaggattcagaaggaggacgaggacgtgctgagaatgaggggaatcaactaccaagaagaagatc |
34902413 |
T |
|
| Q |
108 |
tcaaggagaagtgttgtgatcagcttaatgaagttaacaataaggaatgtaggtgcaatgctttgcaagagataatggagaatttgagtgataggttggg |
207 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34902412 |
tcaaggagaagtgttgtaatcagcttagtgaagttaacaataaggaatgtaggtgtaatgctttgcaagagataatggagaatttgagtgataggttggg |
34902313 |
T |
|
| Q |
208 |
aaagagggaaatgtatgagatggagagggagataaggaatttgcctaagaggtgtaatattccacaatcttctgagtgtgacttgagctttgatcagtac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34902312 |
aaagagggaaatgtatgagatggagagggaggtgaggaatttgcctaagaggtgtaatattccacaatcttctgagtgtgacttgagctttgatcagtac |
34902213 |
T |
|
| Q |
308 |
taaaatataagtaaggggtaatgtgatagcttaattattataatattaattaagctatccttctatgcttttgtaatgtaataaagatcattggagaaaa |
407 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
34902212 |
taaaaaataagtaagggataatgtgatagcttaattattataatattaattaagctatctttctatgattttgtaatgtaataaagatcattggtgaaaa |
34902113 |
T |
|
| Q |
408 |
tgatcatgaaatgaaagcacatatggagagcgtgctttatcactcttttgtctatg-ttttgtttgttaatatatggactatgttgtttgaagttaaatc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| | |||||||| |||||| |
|
|
| T |
34902112 |
tgatcatgaaatgaaagcacatatggagagtgtgctttatcactcttttgtctatgtttttgtttgtta--atatggactctactgtttgaaattaaatt |
34902015 |
T |
|
| Q |
507 |
aaaatctttgcttttgcaaatatattgcattttctctctaaatagtnnnnnnnnnntttaaagatcaatttattacaattaaataacttaaagatttctt |
606 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34902014 |
aaaatttttgcttttgcaaatatattggattttctttctaaatagtacaaaaaaaatttaaagatcaatttattacaattaaataacttaaagatttctt |
34901915 |
T |
|
| Q |
607 |
ggt |
609 |
Q |
| |
|
||| |
|
|
| T |
34901914 |
ggt |
34901912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 34894996 - 34894576
Alignment:
| Q |
11 |
ttgaacctaagacactgcgagaaacacataatgcagaggattcagaaggaagatgaggacgtgctgagaatgaggggaatcaaccaccacgaaga---tc |
107 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||| || | |||||||||||||||||||||||||||| |||| ||||| || |
|
|
| T |
34894996 |
ttgaacctaaatcactgcgagaaacacctaatgcagaggattcagaaggaggacggggacgtgctgagaatgaggggaatcaactaccaagaagaagatc |
34894897 |
T |
|
| Q |
108 |
tcaaggagaagtgttgtgatcagcttaatgaagttaacaataaggaatgtaggtgcaatgctttgcaagagataatggagaatttgagtgataggttggg |
207 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34894896 |
tcaaggagaagtgttgtaatcagcttagtgaagttaacaataaggaatgtaggtgtaatgctttgcaagagataatggagaatttgagtgataggttggg |
34894797 |
T |
|
| Q |
208 |
aaagagggaaatgtatgagatggagagggagataaggaatttgcctaagaggtgtaatattccacaatcttctgagtgtgacttgagctttgatcagtac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34894796 |
aaagagggaaatgtatgagatggagagggaggtgaggaatttgcctaagaggtgtaatattccacaatcttctgagtgtgacttgagctttgatcagtac |
34894697 |
T |
|
| Q |
308 |
taaaatataagtaaggggtaatgtgatagcttaattattataatattaattaagctatccttctatgcttttgtaatgtaataaagatcattggagaaaa |
407 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| | ||| |||||||||| |||||| || ||||||| ||||||||||||| | ||||| |
|
|
| T |
34894696 |
taaaaaataagtaagggataatgtgatagcttaattattgga---ttagttaagctatctctctatgtttatgtaatgaaataaagatcattagtgaaaa |
34894600 |
T |
|
| Q |
408 |
tgatcatgaaatgaaagcacatat |
431 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
34894599 |
tggtcatgaaatgaaagcacatat |
34894576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 664 - 831
Target Start/End: Complemental strand, 34901778 - 34901607
Alignment:
| Q |
664 |
accttgaatcatatgctaagtatgtgattgttgaagcggtggtaacaaaataaaa-ttgcaaaattgtctaggagcgcaaaaatcaaactttaaacgcag |
762 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
34901778 |
accttgaatcatatgctaagtatgtgtttgttgaagcggtggtaacaaaaaaaaaattgcaaaattgtctaggaacgcaaaaattaaactttaaacgcag |
34901679 |
T |
|
| Q |
763 |
atccaaacactccataagatcgagatgg-agaacgagg-ttttaaatttgaatta-ttgtcttctcgttttt |
831 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
34901678 |
atccaaaaactccataagatcgagatggaagaacaaggtttttaaatttgaattatttgtcttctcgttttt |
34901607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 564 - 599
Target Start/End: Original strand, 4558973 - 4559008
Alignment:
| Q |
564 |
ttaaagatcaatttattacaattaaataacttaaag |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558973 |
ttaaagatcaatttattacaattaaataacttaaag |
4559008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 626 - 663
Target Start/End: Complemental strand, 34901896 - 34901859
Alignment:
| Q |
626 |
cttaaaagacttctgatgtaatttagtcttcaatttgt |
663 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34901896 |
cttaaaagacttctaatgtaatttagtcttcaatttgt |
34901859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 597
Target Start/End: Complemental strand, 4558731 - 4558698
Alignment:
| Q |
564 |
ttaaagatcaatttattacaattaaataacttaa |
597 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
4558731 |
ttaaagaccaatttattacaattaaataacttaa |
4558698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 566 - 598
Target Start/End: Complemental strand, 27533022 - 27532990
Alignment:
| Q |
566 |
aaagatcaatttattacaattaaataacttaaa |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27533022 |
aaagatcaatttattacaattaaataacttaaa |
27532990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 598
Target Start/End: Original strand, 41331391 - 41331420
Alignment:
| Q |
569 |
gatcaatttattacaattaaataacttaaa |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41331391 |
gatcaatttattacaattaaataacttaaa |
41331420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 598
Target Start/End: Original strand, 10415464 - 10415493
Alignment:
| Q |
569 |
gatcaatttattacaattaaataacttaaa |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10415464 |
gatcaatttattacaattaaataacttaaa |
10415493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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