View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5964-Insertion-4 (Length: 760)

Name: NF5964-Insertion-4
Description: NF5964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5964-Insertion-4
NF5964-Insertion-4
[»] chr1 (33 HSPs)
chr1 (87-697)||(28164821-28165437)
chr1 (357-546)||(36437165-36437354)
chr1 (337-547)||(42745536-42745745)
chr1 (341-545)||(31181002-31181206)
chr1 (387-545)||(3574720-3574880)
chr1 (387-539)||(9851809-9851960)
chr1 (342-547)||(32715685-32715889)
chr1 (386-546)||(17971357-17971517)
chr1 (357-545)||(27442338-27442525)
chr1 (337-459)||(31003531-31003652)
chr1 (87-166)||(28128961-28129039)
chr1 (357-539)||(46443702-46443883)
chr1 (387-539)||(31152435-31152585)
chr1 (8-71)||(28128911-28128974)
chr1 (397-535)||(39150187-39150324)
chr1 (324-539)||(28469934-28470146)
chr1 (384-495)||(28723957-28724068)
chr1 (386-528)||(42454867-42455009)
chr1 (337-539)||(11435553-11435748)
chr1 (8-71)||(28164771-28164834)
chr1 (357-452)||(26072953-26073047)
chr1 (350-451)||(948110-948212)
chr1 (357-430)||(45691567-45691640)
chr1 (393-453)||(17988156-17988216)
chr1 (110-166)||(28129020-28129075)
chr1 (350-505)||(2619645-2619801)
chr1 (375-435)||(25130217-25130277)
chr1 (110-153)||(28129056-28129099)
chr1 (475-535)||(17988367-17988427)
chr1 (484-539)||(31003673-31003728)
chr1 (490-536)||(52336954-52337000)
chr1 (357-454)||(24547737-24547833)
chr1 (388-457)||(25381403-25381472)
[»] chr6 (24 HSPs)
chr6 (337-545)||(180334-180542)
chr6 (357-519)||(34837116-34837278)
chr6 (369-546)||(606595-606772)
chr6 (329-481)||(5428760-5428912)
chr6 (368-538)||(1856752-1856921)
chr6 (339-440)||(12143667-12143768)
chr6 (324-538)||(7926806-7927024)
chr6 (399-528)||(6657890-6658018)
chr6 (337-522)||(9425509-9425695)
chr6 (357-547)||(19780223-19780413)
chr6 (370-467)||(2950133-2950228)
chr6 (387-444)||(31116416-31116473)
chr6 (387-444)||(31117341-31117398)
chr6 (471-539)||(3611562-3611629)
chr6 (384-431)||(2926417-2926464)
chr6 (358-424)||(6454331-6454398)
chr6 (8-71)||(27339659-27339722)
chr6 (8-71)||(27400399-27400462)
chr6 (377-459)||(13326443-13326524)
chr6 (360-410)||(24789903-24789953)
chr6 (108-157)||(27334436-27334485)
chr6 (108-157)||(27339737-27339786)
chr6 (108-157)||(27395176-27395225)
chr6 (108-157)||(27400477-27400526)
[»] chr4 (18 HSPs)
chr4 (324-546)||(18838745-18838970)
chr4 (337-522)||(31707298-31707480)
chr4 (387-544)||(33721607-33721768)
chr4 (350-539)||(16572252-16572438)
chr4 (337-544)||(47231519-47231724)
chr4 (387-461)||(30615194-30615268)
chr4 (357-538)||(25376810-25376991)
chr4 (389-549)||(42312399-42312567)
chr4 (398-459)||(27032218-27032279)
chr4 (408-545)||(34319546-34319682)
chr4 (389-538)||(21128097-21128246)
chr4 (337-453)||(32599705-32599820)
chr4 (337-430)||(25382459-25382552)
chr4 (357-442)||(44720548-44720633)
chr4 (393-461)||(4960533-4960601)
chr4 (446-545)||(54863918-54864017)
chr4 (393-439)||(2632485-2632531)
chr4 (417-459)||(40413086-40413128)
[»] chr3 (29 HSPs)
chr3 (324-539)||(40344864-40345078)
chr3 (341-546)||(45261357-45261559)
chr3 (340-546)||(46918412-46918617)
chr3 (387-544)||(17003573-17003729)
chr3 (387-538)||(35455309-35455456)
chr3 (387-545)||(8825355-8825511)
chr3 (351-538)||(55452430-55452618)
chr3 (387-539)||(43320133-43320279)
chr3 (350-442)||(36659281-36659373)
chr3 (357-508)||(30041272-30041423)
chr3 (358-459)||(28695624-28695727)
chr3 (324-437)||(25294788-25294904)
chr3 (436-538)||(32211834-32211936)
chr3 (421-537)||(25295082-25295198)
chr3 (340-478)||(43105095-43105234)
chr3 (380-461)||(24650199-24650280)
chr3 (353-461)||(49983786-49983896)
chr3 (394-462)||(22923708-22923776)
chr3 (384-495)||(30577832-30577943)
chr3 (386-440)||(27828545-27828599)
chr3 (387-440)||(42279232-42279285)
chr3 (449-534)||(49983561-49983646)
chr3 (337-413)||(32211767-32211843)
chr3 (388-460)||(48271745-48271817)
chr3 (329-459)||(20265806-20265937)
chr3 (498-548)||(38854605-38854655)
chr3 (488-538)||(47860601-47860651)
chr3 (383-536)||(52596618-52596771)
chr3 (395-440)||(40729772-40729817)
[»] chr2 (31 HSPs)
chr2 (338-539)||(38496473-38496674)
chr2 (337-535)||(3268802-3269000)
chr2 (337-535)||(3269361-3269559)
chr2 (337-535)||(3269920-3270118)
chr2 (337-539)||(40442718-40442920)
chr2 (341-546)||(38214106-38214311)
chr2 (337-546)||(40503868-40504077)
chr2 (337-538)||(16781263-16781463)
chr2 (340-537)||(39063542-39063740)
chr2 (341-533)||(40664240-40664433)
chr2 (357-547)||(19285872-19286062)
chr2 (324-461)||(21794914-21795055)
chr2 (357-502)||(32872378-32872523)
chr2 (387-538)||(4015784-4015934)
chr2 (357-539)||(14200333-14200514)
chr2 (337-416)||(21229606-21229685)
chr2 (386-541)||(7011093-7011244)
chr2 (386-495)||(31404989-31405098)
chr2 (404-461)||(44883181-44883238)
chr2 (387-459)||(31365037-31365109)
chr2 (318-441)||(34309310-34309436)
chr2 (350-434)||(2761616-2761702)
chr2 (357-528)||(34195786-34195952)
chr2 (483-547)||(3711930-3711993)
chr2 (341-442)||(9045520-9045621)
chr2 (397-528)||(18423318-18423447)
chr2 (342-501)||(45723868-45724028)
chr2 (380-430)||(13027911-13027961)
chr2 (350-432)||(28239202-28239284)
chr2 (474-535)||(9045639-9045699)
chr2 (356-425)||(37201439-37201508)
[»] scaffold0088 (1 HSPs)
scaffold0088 (359-546)||(51266-51453)
[»] chr8 (22 HSPs)
chr8 (337-548)||(8251227-8251438)
chr8 (397-546)||(36054809-36054958)
chr8 (357-545)||(31658847-31659034)
chr8 (384-539)||(1445353-1445508)
chr8 (341-504)||(2207806-2207968)
chr8 (387-545)||(16890264-16890425)
chr8 (387-503)||(2152356-2152473)
chr8 (357-545)||(2520099-2520285)
chr8 (340-547)||(38209468-38209675)
chr8 (393-467)||(30870743-30870817)
chr8 (387-461)||(30653627-30653701)
chr8 (384-534)||(36408178-36408327)
chr8 (388-454)||(40314300-40314366)
chr8 (451-544)||(30112485-30112578)
chr8 (339-459)||(15438258-15438378)
chr8 (339-459)||(15529562-15529682)
chr8 (440-540)||(40694231-40694331)
chr8 (404-539)||(29916965-29917099)
chr8 (387-548)||(11778029-11778193)
chr8 (489-539)||(30654260-30654310)
chr8 (491-545)||(35431579-35431633)
chr8 (404-461)||(27518543-27518600)
[»] chr7 (26 HSPs)
chr7 (337-547)||(41508092-41508302)
chr7 (387-546)||(20949066-20949224)
chr7 (339-534)||(12485281-12485476)
chr7 (388-538)||(7307441-7307592)
chr7 (339-534)||(12506713-12506908)
chr7 (386-528)||(6549064-6549206)
chr7 (324-443)||(45072448-45072570)
chr7 (398-511)||(18145803-18145916)
chr7 (337-418)||(46101120-46101201)
chr7 (350-546)||(2195798-2195996)
chr7 (380-539)||(10599739-10599898)
chr7 (375-538)||(37048576-37048744)
chr7 (415-538)||(46101236-46101359)
chr7 (357-546)||(14568350-14568539)
chr7 (357-502)||(34470095-34470240)
chr7 (405-534)||(46341502-46341631)
chr7 (337-467)||(14658722-14658850)
chr7 (368-464)||(18117341-18117435)
chr7 (337-467)||(2122421-2122552)
chr7 (357-418)||(943255-943315)
chr7 (403-459)||(15028788-15028844)
chr7 (357-440)||(10409792-10409877)
chr7 (337-411)||(20043604-20043678)
chr7 (480-546)||(42935447-42935513)
chr7 (437-541)||(14650144-14650249)
chr7 (367-424)||(20032519-20032576)
[»] scaffold0836 (1 HSPs)
scaffold0836 (337-546)||(3015-3224)
[»] chr5 (19 HSPs)
chr5 (337-535)||(18705003-18705201)
chr5 (387-519)||(11983578-11983709)
chr5 (324-500)||(2225619-2225798)
chr5 (340-537)||(3629158-3629355)
chr5 (350-534)||(6688792-6688978)
chr5 (397-534)||(19296165-19296300)
chr5 (397-504)||(7735789-7735896)
chr5 (387-545)||(11691055-11691211)
chr5 (384-538)||(4449438-4449592)
chr5 (357-539)||(27193011-27193191)
chr5 (357-467)||(29948033-29948143)
chr5 (338-459)||(14417936-14418059)
chr5 (330-443)||(35546991-35547104)
chr5 (397-506)||(36482426-36482535)
chr5 (325-405)||(7736664-7736744)
chr5 (429-536)||(3257247-3257354)
chr5 (387-442)||(14917820-14917875)
chr5 (436-539)||(43442043-43442145)
chr5 (436-545)||(35931539-35931646)
[»] scaffold0024 (1 HSPs)
scaffold0024 (337-546)||(154333-154542)
[»] scaffold1809 (1 HSPs)
scaffold1809 (337-545)||(443-651)
[»] scaffold0015 (1 HSPs)
scaffold0015 (360-538)||(38802-38979)


Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 87 - 697
Target Start/End: Original strand, 28164821 - 28165437
Alignment:
Q  87 tctacacttttactgccaaaactgaaacttacttctcatcttccgtgtggaccaatatgggaaacttccttctcatcttcaaagtcttcactgtaggttg 186  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28164821 tctacacttttactaccaagactgaaacttccttctcatcttccgtgtggaccaatatgggaaacttccttctcatcttcaaagtcttcactgtaggttg 28164920  T
Q  187 ctaccttaacataacaaatttatatttcattccaaataagacaagaatagcaaatttaaaacagaataataatgaagtttaatatactttctttatcaat 286  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28164921 ttaccttaacataacaaatttatatttcattccaaataagacatgaatagcaaatttaaaacagaataataatgaagtttaatatactttctttatcaat 28165020  T
Q  287 ggttttatttcaacttcaaaatatatactcatcccctcggtctttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaat 386  Q
    |||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28165021 ggttttatttcaacttcaaaatatatactcctccctccggtccttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgtaat 28165120  T
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  28165121 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctaccaatattaaaaagataaagacttaatgaggggtaaaaaa 28165220  T
Q  487 atcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaataa-nnnnnnnnnaaattttcttataaatagga-cgggga 584  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||| ||||||    
T  28165221 atcttttaagcaataactatacctttaaagttgtgacattttattataaatagaaccaaataattttttaaaaaaattttcttataaataggaccgggga 28165320  T
Q  585 cgtaacatcatatttatttcgtttttatctatcacacattttaaaacatacattacataccgcatttgatat----tatcatctttgtatctccaataat 680  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    | ||||||||||||||||||||||    
T  28165321 cgtaacatcatatttatttcgcttttatctatcacacatttcaaaacatacattacataccgcatttgatatcatctttcatctttgtatctccaataat 28165420  T
Q  681 tataccccttttgttac 697  Q
    |||||||||||||||||    
T  28165421 tataccccttttgttac 28165437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 357 - 546
Target Start/End: Original strand, 36437165 - 36437354
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacat-ctactaatatta 455  Q
    ||||||||| | | ||| |||| ||| || ||||| || ||||||||||||||||||||||| ||  |||||||||||||||||||| | ||||||||||    
T  36437165 aaaaccaatgccagcattaattgttgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatcccactaatatta 36437264  T
Q  456 aaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 546  Q
    |||||| | ||| | |||||||| || |||| ||||||||||||||||||| | || |||||||||||||||| |||||||||| ||||||    
T  36437265 aaaagacagacattaaatgagggataaaaaagtcttttaagcaataactat-ccttaaaagttgtgacattttcttataaataggaccaaa 36437354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 337 - 547
Target Start/End: Complemental strand, 42745745 - 42745536
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| |||||| ||||||||| | ||||| |||| | | || ||||| || ||||||||||||||||||||||| ||  |||||||||||||    
T  42745745 aagaaaaaccaaaaaacatcaaaaccaatgctatcattaattgtcgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacatta 42745646  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    |||||||| |||||||||||||||  || |  | |||||||| || |||| | |||||| |||||| |||||||  ||| |||||||||||| |||||||    
T  42745645 aatacatccactaatattaaaaaggcaatccttaaatgagggata-aaaagtattttaaacaataattatacttcaaaaattgtgacattttcttataaa 42745547  T
Q  537 tagaaccaaat 547  Q
    ||| |||||||    
T  42745546 taggaccaaat 42745536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 341 - 545
Target Start/End: Original strand, 31181002 - 31181206
Alignment:
Q  341 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 440  Q
    |||||||| |||||| ||||||||| ||||||| ||| ||   || ||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  31181002 aaaaccaaaaaacatcaaaaccaatgcaatcattaatcatat-aactttttgaatatttttacaagtatacccttatagaaaattgtgaaacattaaata 31181100  T
Q  441 catctactaatatt-aaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    ||    |||||||| ||||| | ||||| | ||||| | ||| |||| |||||||| |||||||||||  || |||||||||||||||| |||||||||     
T  31181101 cactcgctaatattaaaaaaaaaaaacattaaatgaagtgtaaaaaagtcttttaaacaataactataagttaaaagttgtgacattttcttataaataa 31181200  T
Q  540 aaccaa 545  Q
    ||||||    
T  31181201 aaccaa 31181206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 387 - 545
Target Start/End: Complemental strand, 3574880 - 3574720
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctac--taatattaaaaagataaacacttaatgaggggtagaa 484  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||| |||||||||||  |   ||||||||||| |||||||| | |||||||||||||     
T  3574880 tttttgaatgtttttataaatatactcttataaaaaattgtgaaatattaaatacattcaaattaatattaaaatgataaacattaaatgaggggtagac 3574781  T
Q  485 aaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 545  Q
    |||| |||||| ||||||||| | ||  |||||||||||||||| |||||||||| |||||    
T  3574780 aaattttttaaacaataactacatttgaaaagttgtgacattttcttataaataggaccaa 3574720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 387 - 539
Target Start/End: Original strand, 9851809 - 9851960
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 486  Q
    |||||||||||||||||||||||||| |||||||| | |||||||||||||||| | | ||||||||| |||||| ||||| ||||  |||| || |||     
T  9851809 tttttgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccactaatatttaaaagagaaaca-ttaaatagggataaaaag 9851907  T
Q  487 atcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
     || ||||||||||||||| ||||| |||||||||||||||| ||||||||||    
T  9851908 gtcatttaagcaataactacactttaaaagttgtgacattttcttataaatag 9851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 342 - 547
Target Start/End: Complemental strand, 32715889 - 32715685
Alignment:
Q  342 aaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatac 441  Q
    ||||||| || ||| |||||||| |||||||| | || ||| |||||||||||| |||||||||||||| ||| ||||||| |||||||  ||||||||     
T  32715889 aaaccaaaaatcatcaaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaatat 32715790  T
Q  442 atctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaa 541  Q
    | | ||||||||| ||||||| |||| | |||||||| |||||||  ||||||| |||||| |  || || ||| ||||||| |||| |||||||||| |    
T  32715789 acccactaatattgaaaagatcaacattaaatgagggctagaaaagacttttaaacaataaat-gaccttaaaatttgtgactttttcttataaatagga 32715691  T
Q  542 ccaaat 547  Q
    ||||||    
T  32715690 ccaaat 32715685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 386 - 546
Target Start/End: Original strand, 17971357 - 17971517
Alignment:
Q  386 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaa 485  Q
    |||||||||| ||||||||||||||||||  |||||| |||||||  |||||||| |   ||||||||| ||||||  |||| | |||||||| ||||||    
T  17971357 ttttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaacattaaatgagggttagaaa 17971456  T
Q  486 aatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 546  Q
    | |||||||| |||||| ||||| || ||||||||||| |||| |||||||||| ||||||    
T  17971457 agtcttttaaacaataaatataccttaaaagttgtgactttttcttataaataggaccaaa 17971517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 357 - 545
Target Start/End: Original strand, 27442338 - 27442525
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||||||| |||||||| | || |||||||||||||||| |||||||||||||| ||| ||||||| |||||||  |||||||| | | | |||||||      
T  27442338 aaaaccaagacaatcattagttgttgcaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaatatacccattaatatt-g 27442436  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 545  Q
    |||||  |||| | |||||||| ||||||| |||||||| || ||| |||||||| ||||||||||  |||| |||||||||| |||||    
T  27442437 aaagaccaacattaaatgagggttagaaaagtcttttaaacactaaatatactttaaaagttgtgattttttcttataaataggaccaa 27442525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 337 - 459
Target Start/End: Original strand, 31003531 - 31003652
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| |||||| ||||||||| ||||||| ||| || | || |||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  31003531 aagaaaaaccaaaaaacatcaaaaccaatgcaatcattaatcat-gtaactttttgaatatttttacaaatatacctttatagaaaattgttaaacatta 31003629  T
Q  437 aatacatctactaatattaaaaa 459  Q
    |||||||   |||||||||||||    
T  31003630 aatacattcgctaatattaaaaa 31003652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 28128961 - 28129039
Alignment:
Q  87 tctacacttttactgccaaaactgaaacttacttctcatcttccgtgtggaccaatatgggaaacttccttctcatcttc 166  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28128961 tctacacttttactaccaagactgaaacttccttctcatcttccgtgtggaccaatat-ggaaacttccttctcatcttc 28129039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 357 - 539
Target Start/End: Complemental strand, 46443883 - 46443702
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaatttttt-gaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatatta 455  Q
    ||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||  || |||||||||||||||||| ||||||  ||||| ||||    
T  46443883 aaaaccaatacaatcataaattaatataatttttttgaatatttttacaaatatacccacat-aaaaattgtgaaacattatatacattcactaacatta 46443785  T
Q  456 aaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    ||||||  |||  | |||||||| || |||| | ||||||| ||||| || || || ||||||||||| |||| ||||||||||    
T  46443784 aaaaga-gaactataaatgagggataaaaaagttttttaagtaataattacaccttaaaagttgtgacgttttcttataaatag 46443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 539
Target Start/End: Complemental strand, 31152585 - 31152435
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 486  Q
    ||||||||||||||||||||||||| || |||||||  ||||||||||||||||| |  ||||||||||||| || ||||| | |||||||||||| |||    
T  31152585 tttttgaatatttttacaaatatacgctcataaaaa--tgtgaaacattaaatacgttcactaatattaaaa-gagaaacattaaatgaggggtagcaaa 31152489  T
Q  487 atcttttaagcaataactatacttttaaagttgtgacattt-tattataaatag 539  Q
     |||||||||||||||| | |  || |||||||||| |||| | ||||||||||    
T  31152488 gtcttttaagcaataacgacatcttaaaagttgtgatatttcttttataaatag 31152435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 28128911 - 28128974
Alignment:
Q  8 atatgcaatattctctcttccatttattttctgaacttttggctaccaagtctacacctttact 71  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  28128911 atatgcaatattctctcttccatttattttctgaagttttggctaccaagtctacacttttact 28128974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 397 - 535
Target Start/End: Original strand, 39150187 - 39150324
Alignment:
Q  397 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 496  Q
    |||||||||||||||||| ||||||  ||||||| |||||||||||   | |||||||||||| | ||||| | ||| |||||||||||| |||||||||    
T  39150187 tttttacaaatataccctcataaaag-ttgtgaagcattaaatacactcattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaag 39150285  T
Q  497 caataactatacttttaaagttgtgacattttattataa 535  Q
    ||||||||| || || ||||| |||| ||||| ||||||    
T  39150286 caataactacaccttaaaagtagtgatattttcttataa 39150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 324 - 539
Target Start/End: Complemental strand, 28470146 - 28469934
Alignment:
Q  324 cggtctttattataagaaa---aaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaa 420  Q
    |||||||||||||||| ||   |||||| ||| || ||||||||| || ||||  |||| ||||| ||||||||||||||     | |||| || |||||    
T  28470146 cggtctttattataagcaacaaaaccaaaaaatatcaaaaccaatgcattcattgattaatgcaactttttgaatatttt-----acatactctcataaa 28470052  T
Q  421 aaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgt 520  Q
    |||||||||||||||||||||| | || |||||| |||||| ||||| ||||  | || |||||||  | |||||| |||||||| || || ||| ||||    
T  28470051 aaattgtgaaacattaaatacacccacaaatatttaaaagagaaaca-ttaaataaggatagaaaagacatttaagtaataactacaccttaaaatttgt 28469953  T
Q  521 gacattttattataaatag 539  Q
    |||||||| ||||||||||    
T  28469952 gacatttttttataaatag 28469934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 384 - 495
Target Start/End: Original strand, 28723957 - 28724068
Alignment:
Q  384 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtaga 483  Q
    ||||||||||||  ||||||| ||||||||| ||||||| |||||||  |||||||| | | |||||||||||||||||||||| | | |||||| ||||    
T  28723957 aattttttgaatgcttttacagatataccctcataaaaatttgtgaagtattaaatataaccactaatattaaaaagataaacattaattgagggttaga 28724056  T
Q  484 aaaatcttttaa 495  Q
    ||| ||||||||    
T  28724057 aaagtcttttaa 28724068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 386 - 528
Target Start/End: Original strand, 42454867 - 42455009
Alignment:
Q  386 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaa 485  Q
    ||||||||||||||||| ||||||||||| |||||||||| |||| |||||||||||   |||||||||||||||| ||||  | ||| |  || | |||    
T  42454867 ttttttgaatatttttataaatataccctcataaaaaattatgaagcattaaatacactcactaatattaaaaagacaaacgttaaataaaaggcataaa 42454966  T
Q  486 aatcttttaagcaataactatacttttaaagttgtgacatttt 528  Q
    | |||||||| || | |||| || || ||||||||||||||||    
T  42454967 agtcttttaaacattcactacaccttaaaagttgtgacatttt 42455009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 337 - 539
Target Start/End: Complemental strand, 11435748 - 11435553
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| |||||| ||||||||| ||||||| |  || || || |||||| |||||||||||       ||| ||||||||||||||  |||||    
T  11435748 aagaaaaaccaaaaaacatcaaaaccaatgcaatcattatatagtgtaactttttgcatatttttacat------cctcataaaaaattgtgatgcatta 11435655  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    |||||||| |||||||||||||| | ||||| | ||| |  | || |||| | |||||| |||||| ||||| ||  ||||||||||||||| |||||||    
T  11435654 aatacatccactaatattaaaaaaacaaacattaaataaatgatataaaagt-ttttaaacaataattataccttataagttgtgacattttcttataaa 11435556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 28164771 - 28164834
Alignment:
Q  8 atatgcaatattctctcttccatttattttctgaacttttggctaccaagtctacacctttact 71  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  28164771 atatgcaatattatctgttccatttattttctgaagttttggctaccaagtctacacttttact 28164834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 452
Target Start/End: Complemental strand, 26073047 - 26072953
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaata 452  Q
    ||||||||||||||||| |||  ||| |||||||| |||||||||| |||||| |  | ||| |||||||| ||||||||||||||||||||||||    
T  26073047 aaaaccaatacaatcattaatacttgtaatttttt-aatatttttaaaaatattctttgatagaaaattgtcaaacattaaatacatctactaata 26072953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 350 - 451
Target Start/End: Original strand, 948110 - 948212
Alignment:
Q  350 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaa-ttgtgaaacattaaatacatctact 448  Q
    |||||| ||||| |||||||| || ||||| |  || ||||| ||||||||| |||||||||||| |||||||| ||| ||||||||||||||||| |||    
T  948110 aaacatgaaaactaatacaattattaattaataaaactttttaaatattttttcaaatataccctgataaaaaatttgcgaaacattaaatacatccact 948209  T
Q  449 aat 451  Q
    |||    
T  948210 aat 948212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 45691567 - 45691640
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaa 430  Q
    |||||||| ||||| || | || ||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  45691567 aaaaccaagacaattattagttgttgtaattttttgaatatttttacaaatataccctcataaaaatttgtgaa 45691640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 17988156 - 17988216
Alignment:
Q  393 aatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatat 453  Q
    |||| ||||||||||||| ||| |||| ||||||||||||||||||||||||| |||||||    
T  17988156 aataattttacaaatatatcctcataataaattgtgaaacattaaatacatctgctaatat 17988216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 28129020 - 28129075
Alignment:
Q  110 gaaacttacttctcatcttccgtgtggaccaatatgggaaacttccttctcatcttc 166  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  28129020 gaaacttccttctcatcttccgtgtggtccaatat-ggaaacttccttctcatcttc 28129075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 505
Target Start/End: Original strand, 2619645 - 2619801
Alignment:
Q  350 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaa-ttgtgaaacattaaatacatctact 448  Q
    ||||||||||| |||||||||||| | |||    || ||||||||||||| | ||| |||||||| |||||||| |||| || |||||||| |||   ||    
T  2619645 aaacattaaaagcaatacaatcattagttaaaataactttttgaatatttgtgcaattataccctcataaaaaaattgtcaagcattaaatgcattctct 2619744  T
Q  449 aatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataacta 505  Q
    ||| || |||| | ||||| | |||||||||||||||||  ||||||  ||||||||    
T  2619745 aatgtttaaaaaacaaacattaaatgaggggtagaaaaaaattttaaataataacta 2619801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 25130277 - 25130217
Alignment:
Q  375 aattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatt 435  Q
    |||||||| || |||||||||| ||||||||||||||| | ||| ||||||||||||||||    
T  25130277 aattattgtaaatttttgaatacttttacaaatataccatcatagaaaattgtgaaacatt 25130217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 28129056 - 28129099
Alignment:
Q  110 gaaacttacttctcatcttccgtgtggaccaatatgggaaactt 153  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||    
T  28129056 gaaacttccttctcatcttccgtgtggtccaatatgggaaactt 28129099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 535
Target Start/End: Original strand, 17988367 - 17988427
Alignment:
Q  475 aggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 535  Q
    ||||||| |||| |||||||| ||||||||| || || |||||||||||||||| ||||||    
T  17988367 aggggtaaaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataa 17988427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 539
Target Start/End: Original strand, 31003673 - 31003728
Alignment:
Q  484 aaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    |||||||||||| || |||||| || || |||||||||||||||| ||||||||||    
T  31003673 aaaatcttttaaacagtaactacaccttaaaagttgtgacattttcttataaatag 31003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 536
Target Start/End: Original strand, 52336954 - 52337000
Alignment:
Q  490 ttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    ||||||||||||||||||| || |||| ||||||||||| |||||||    
T  52336954 ttttaagcaataactataccttaaaagatgtgacattttcttataaa 52337000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 454
Target Start/End: Complemental strand, 24547833 - 24547737
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatatt 454  Q
    ||||| ||||||||||| |||| || | | ||||| |||| ||||||||||||| || |||| ||| |||||||  |||||||||||  |||||||||    
T  24547833 aaaactaatacaatcattaatt-ttaccactttttaaataattttacaaatatatccctatagaaagttgtgaacgattaaatacattcactaatatt 24547737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 457
Target Start/End: Original strand, 25381403 - 25381472
Alignment:
Q  388 ttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaa 457  Q
    |||||||||| |||||| |||||   ||||| || |||||||||||||||||||| ||| | ||||||||    
T  25381403 ttttgaatatctttacagatatattgttatagaacattgtgaaacattaaatacacctattcatattaaa 25381472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 5e-52; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 337 - 545
Target Start/End: Complemental strand, 180542 - 180334
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| |||||| |||||||||||| |||| ||||| || || ||||||||||| ||||||||||||||||||||||||||| |||| | |||    
T  180542 aagaaaaaccaaaaaacatcaaaaccaatacactcattaattagtgtaactttttgaatatgtttacaaatatacccttataaaaaattttgaagcgtta 180443  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    |||||||| |||||||||||||||| ||||| | ||| ||||||| |||| |||||||||||||||||| |  || ||| |||||| ||||| |||||||    
T  180442 aatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaagcaataactacatcttaaaaattgtgatattttcttataaa 180343  T
Q  537 tagaaccaa 545  Q
    ||| |||||    
T  180342 taggaccaa 180334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 357 - 519
Target Start/End: Original strand, 34837116 - 34837278
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||| ||||||| |||| ||||| || || |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| | |||||||||    
T  34837116 aaaatcaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaaattgtgaagcattcaatacatccattaatattaa 34837215  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttg 519  Q
    ||||| || || | ||| ||||||| |||| |||||||| ||||| ||| || || |||||||    
T  34837216 aaagacaagcattaaataaggggtaaaaaagtcttttaaacaatagctacaccttaaaagttg 34837278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 369 - 546
Target Start/End: Original strand, 606595 - 606772
Alignment:
Q  369 atcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacac 468  Q
    ||||| |||| ||| || ||||| || ||||||||||||||||||||||| ||  ||||||||||||||||||||| |||||||||||||| | |  ||     
T  606595 atcattaattgttgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaatacagtcat 606694  T
Q  469 ttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 546  Q
    | ||| |||| |  |||| | |||||||| |||| || || || |||||||||||||||| |||||||||| ||||||    
T  606695 taaataagggattaaaaagtattttaagctataagtacaccttaaaagttgtgacattttcttataaataggaccaaa 606772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 329 - 481
Target Start/End: Complemental strand, 5428912 - 5428760
Alignment:
Q  329 tttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtg 428  Q
    ||||| |||||||||||||| ||| || ||||||| | ||||||| |||| ||| |||||||| ||||||||||||||||||| ||| || ||| || ||    
T  5428912 tttataataagaaaaaccaaaaaatatcaaaaccattgcaatcattaattgttgtaattttttaaatatttttacaaatatactcttgtagaaagttatg 5428813  T
Q  429 aaacattaaatacatctactaatattaaaaagataaacacttaatgaggggta 481  Q
    ||||||| ||| |||  ||||||||||||||||||| || | |||||| ||||    
T  5428812 aaacattgaatgcattcactaatattaaaaagataatcattaaatgagaggta 5428760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 368 - 538
Target Start/End: Complemental strand, 1856921 - 1856752
Alignment:
Q  368 aatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaaca 467  Q
    |||||| ||||| || |||||||| ||||||||||||||||||| || ||| ||||| || ||||||||||||| || | |||||||||||||| ||| |    
T  1856921 aatcattaattaatgtaattttttaaatatttttacaaatatactctcatacaaaat-gtaaaacattaaatacttccattaatattaaaaagagaaata 1856823  T
Q  468 cttaatgaggggtagaaaaatcttttaagcaataact-atacttttaaagttgtgacattttattataaata 538  Q
     | |||||| | ||||||| |||||||| |||||||| |||| || |||||||||| ||||| |||||||||    
T  1856822 ttaaatgagagatagaaaagtcttttaaacaataactgatac-ttaaaagttgtgatatttttttataaata 1856752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 339 - 440
Target Start/End: Original strand, 12143667 - 12143768
Alignment:
Q  339 gaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 438  Q
    |||||||||| ||| || ||||||||| ||||||| ||||| || || |||||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  12143667 gaaaaaccaaaaaatatcaaaaccaatgcaatcattaattaatgtaactttttgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaa 12143766  T
Q  439 ta 440  Q
    ||    
T  12143767 ta 12143768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 324 - 538
Target Start/End: Complemental strand, 7927024 - 7926806
Alignment:
Q  324 cggtctttattataagaaaa----accaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataa 419  Q
    ||||||||||||||||||||    || || |||||| ||||||||||||  ||| ||||| |  || ||||||||||   ||||||||||||||| ||||    
T  7927024 cggtctttattataagaaaataaaacaaaaaaacatcaaaaccaatacacacattaattagtataactttttgaataagattacaaatataccctcataa 7926925  T
Q  420 aaaattgtgaaacattaaataca-tctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagtt 518  Q
    ||||||||||| ||||||||||| |||  |||||||||||||| ||  | | ||| ||||||| | || | || |||  ||||| || ||||| ||||||    
T  7926924 aaaattgtgaagcattaaatacactct-ttaatattaaaaagacaactattaaataaggggtatataagttttctaaaaaataattacactttaaaagtt 7926826  T
Q  519 gtgacattttattataaata 538  Q
    |||| ||||| |||||||||    
T  7926825 gtgatattttcttataaata 7926806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 399 - 528
Target Start/End: Complemental strand, 6658018 - 6657890
Alignment:
Q  399 tttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagca 498  Q
    |||||||||||||||| ||||||| |||||||  |||||||| | | |||||||||||||||| ||||| | |||||||| ||||||| || ||||| ||    
T  6658018 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaatgagggttagaaaagtcatttaaaca 6657919  T
Q  499 ataactatacttttaaagttgtgacatttt 528  Q
    |||| | |||  ||||||||||||| ||||    
T  6657918 ataaatgtac-cttaaagttgtgacttttt 6657890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 337 - 522
Target Start/End: Complemental strand, 9425695 - 9425509
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaatttttt-gaatatttttacaaatatacccttataaaaaattgtgaaacatt 435  Q
    |||| ||||||| || ||| |||||||| | |||||| | || |||||||||||| |||| ||||||||||||||| || ||||||   ||||||  |||    
T  9425695 aagagaaaccaaaaatcatcaaaaccaagaaaatcattagttgttgcaatttttttgaatgtttttacaaatatactctcataaaattctgtgaagtatt 9425596  T
Q  436 aaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtga 522  Q
    ||||| ||  |||| ||| ||||||||||||| | |||||||  || |||| |||||||| |||||| ||||| |  ||||||||||    
T  9425595 aaatatattcactattatgaaaaagataaacattaaatgaggattaaaaaagtcttttaaacaataaatatacctcaaaagttgtga 9425509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 357 - 547
Target Start/End: Complemental strand, 19780413 - 19780223
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||||||| | |||||| | |||||| |||||||| ||| ||||||||||||||||    || ||| |||||||  |||||||| | | |||||| || |    
T  19780413 aaaaccaagataatcattagttattgtaatttttttaatgtttttacaaatataccgcattataaatttgtgaagtattaaatatacccactaattttga 19780314  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaat 547  Q
    ||||| ||||| | |||||||| ||||||| |||||||| |||||| ||||  || |||||||  || |||| ||||| |||| |||||||    
T  19780313 aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaat 19780223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 370 - 467
Target Start/End: Original strand, 2950133 - 2950228
Alignment:
Q  370 tcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaaca 467  Q
    |||| ||||| || ||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||| | | |||||||| ||||| |||||||    
T  2950133 tcattaattaatgtaattttttgaatatttttacaaatatatcctgat-aaaaattgtgaaacatt-aatatacccactaatatgaaaaatataaaca 2950228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 31116473 - 31116416
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatc 444  Q
    ||||||||||| |||||||||||||||||||| | |||||||||||||| ||||||||    
T  31116473 tttttgaatatgtttacaaatatacccttatagagaattgtgaaacattcaatacatc 31116416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 31117398 - 31117341
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatc 444  Q
    ||||||||||| |||||||||||||| ||||| | |||||||||||||| ||||||||    
T  31117398 tttttgaatatgtttacaaatatacctttatagagaattgtgaaacattcaatacatc 31117341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 539
Target Start/End: Complemental strand, 3611629 - 3611562
Alignment:
Q  471 aatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    |||||||| ||||||||| |||||| ||||||||||||  |||||||||| ||||||| ||||||||||    
T  3611629 aatgagggatagaaaaatattttaaacaataactatac-cttaaagttgtaacattttcttataaatag 3611562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 2926417 - 2926464
Alignment:
Q  384 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaa 431  Q
    |||| |||||||||||||||||||||||  || |||||||||||||||    
T  2926417 aattgtttgaatatttttacaaatatacttttctaaaaaattgtgaaa 2926464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 6454331 - 6454398
Alignment:
Q  358 aaaccaatacaatcatcaattattgcaatttt-ttgaatatttttacaaatatacccttataaaaaat 424  Q
    ||||||||||  |||| ||||| || |||||| ||||||||||||| ||||||||| |||||||||||    
T  6454331 aaaccaataccgtcattaattagtgtaatttttttgaatatttttagaaatatacctttataaaaaat 6454398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 27339659 - 27339722
Alignment:
Q  8 atatgcaatattctctcttccatttattttctgaacttttggctaccaagtctacacctttact 71  Q
    ||||| |||||||| || | |||||||||||| || |||||||||||||||| |||| ||||||    
T  27339659 atatgaaatattctttccttcatttattttctcaagttttggctaccaagtcaacacttttact 27339722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 27400399 - 27400462
Alignment:
Q  8 atatgcaatattctctcttccatttattttctgaacttttggctaccaagtctacacctttact 71  Q
    ||||| |||||||| || | |||||||||||| || |||||||||||||||| |||| ||||||    
T  27400399 atatgaaatattctttccttcatttattttctcaagttttggctaccaagtcaacacttttact 27400462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 459
Target Start/End: Original strand, 13326443 - 13326524
Alignment:
Q  377 ttattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaa 459  Q
    |||||| ||||||| |||||| | ||||| ||||| |||||| ||| |||||||||||| ||||||| |  ||||||||||||    
T  13326443 ttattgtaatttttagaatatctctacaattatacgcttatagaaa-ttgtgaaacattgaatacatttcttaatattaaaaa 13326524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 24789903 - 24789953
Alignment:
Q  360 accaatacaatcatcaattattgcaattttttgaatatttttacaaatata 410  Q
    |||||| ||||||| |||| ||| |||||||| ||||||||||||||||||    
T  24789903 accaatgcaatcattaattgttgtaattttttaaatatttttacaaatata 24789953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 27334436 - 27334485
Alignment:
Q  108 ctgaaacttacttctcatcttccgtgtggaccaatatgggaaacttcctt 157  Q
    ||||||||| ||||| ||||||| ||||||||||| ||||| ||||||||    
T  27334436 ctgaaacttccttcttatcttccatgtggaccaatgtgggacacttcctt 27334485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 27339737 - 27339786
Alignment:
Q  108 ctgaaacttacttctcatcttccgtgtggaccaatatgggaaacttcctt 157  Q
    ||||||||| ||||||||||||| ||||||| ||| ||||| ||||||||    
T  27339737 ctgaaactttcttctcatcttccatgtggacaaatgtgggacacttcctt 27339786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 27395176 - 27395225
Alignment:
Q  108 ctgaaacttacttctcatcttccgtgtggaccaatatgggaaacttcctt 157  Q
    ||||||||| ||||| ||||||| ||||||||||| ||||| ||||||||    
T  27395176 ctgaaacttccttcttatcttccatgtggaccaatgtgggacacttcctt 27395225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 27400477 - 27400526
Alignment:
Q  108 ctgaaacttacttctcatcttccgtgtggaccaatatgggaaacttcctt 157  Q
    ||||||||| ||||||||||||| ||||||| ||| ||||| ||||||||    
T  27400477 ctgaaactttcttctcatcttccatgtggacaaatgtgggacacttcctt 27400526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 324 - 546
Target Start/End: Complemental strand, 18838970 - 18838745
Alignment:
Q  324 cggtctttattataagaaa---aaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaat-atttttacaaatatacccttataa 419  Q
    ||||| |||||||||||||   |||||| |||||| |||||||||  |||||| ||||| |  || ||||||||| ||||||||||||||||||| ||||    
T  18838970 cggtccttattataagaaataaaaccaaaaaacatcaaaaccaatgtaatcattaattaatataaatttttgaattatttttacaaatataccctcataa 18838871  T
Q  420 aaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttg 519  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| || | ||||| |||||||||| |||||||| |||||| ||||| || ||||||     
T  18838870 aaaattgtgaaacattaaatacacccactaatattaaaaagataatcattaaatga-gggtagaaaagtcttttaaacaataattataccttaaaagtta 18838772  T
Q  520 tgacattttattataaatagaaccaaa 546  Q
    ||||||||| | |||||||||||||||    
T  18838771 tgacattttctcataaatagaaccaaa 18838745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 337 - 522
Target Start/End: Original strand, 31707298 - 31707480
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| |||||  |||||||||||| |||| ||||| || || |||||||||||||||||||||||||||| ||||||| || |||| |||      
T  31707298 aagaaaaaccaaaaaacaacaaaaccaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaatttatgaagcat-- 31707395  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtga 522  Q
     ||||| | |||||||||||||||| ||||| | ||| |||||||||||| |||| ||||||||||||| || || ||||||||||    
T  31707396 -atacacccactaatattaaaaagacaaacattaaataaggggtagaaaagtcttctaagcaataactacaccttaaaagttgtga 31707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 387 - 544
Target Start/End: Original strand, 33721607 - 33721768
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatc----tactaatattaaaaagataaacacttaatgaggggtag 482  Q
    ||||| |||| ||||||||| |||| || ||||||||||||||||||||||||||| |    || || |||||||| |||||||| | || ||| |||||    
T  33721607 tttttcaataattttacaaacatactctcataaaaaattgtgaaacattaaatacaccaaactaatactattaaaaggataaacattaaacgagaggtag 33721706  T
Q  483 aaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaacca 544  Q
    |||| |||||||| ||||||||| || || ||| |||||||||||| |||||||||| ||||    
T  33721707 aaaagtcttttaaacaataactacacattaaaaattgtgacattttcttataaataggacca 33721768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 350 - 539
Target Start/End: Complemental strand, 16572438 - 16572252
Alignment:
Q  350 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctacta 449  Q
    |||||| ||||||||| | ||| | |||| ||| || ||||| || ||||||| ||||||||| ||||| || ||||||||| ||||||||||   ||||    
T  16572438 aaacatcaaaaccaatgctatcgttaattgttgtaactttttaaacatttttaaaaatataccattatagaatattgtgaaatattaaataca---acta 16572342  T
Q  450 atattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    |||||||||| | |  || | |||||||| || |||| ||| |||||||||||||| || || |||||||||||||||| ||||||||||    
T  16572341 atattaaaaatacagtcattaaatgagggataaaaaattctgttaagcaataactacaccttaaaagttgtgacattttcttataaatag 16572252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 337 - 544
Target Start/End: Original strand, 47231519 - 47231724
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||| ||||| |||||| |||||||||  |||||| ||||| || || ||||||||||||||||||| |||| ||| ||||||| ||||||| |||||    
T  47231519 aagaaataccaaaaaacatgaaaaccaatggaatcattaattaatgtaactttttgaatatttttacaattata-cctcataaaaagttgtgaatcatta 47231617  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    ||||||  |  |||||||| |||||  |||| | ||| || |||| ||||||||||||| |||||| ||||  || |||||  ||||||||| |||||||    
T  47231618 aatacacttgttaatattataaaga-caacattaaataagaggtaaaaaaatcttttaaacaataaatatatcttaaaagtattgacattttcttataaa 47231716  T
Q  537 tagaacca 544  Q
    || |||||    
T  47231717 taaaacca 47231724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 30615268 - 30615194
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 461  Q
    ||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  30615268 tttttaaatatttttacaaatacacctttataaaaaattatgaaacattaaatacatctactaatattaaaaaga 30615194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 357 - 538
Target Start/End: Original strand, 25376810 - 25376991
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||||||| |||||||| | || ||| |||||||||||| ||||||||||||||||||  |||||| |||||||  |||||||| |   || |||||| |    
T  25376810 aaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatactcacaaatattga 25376909  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaata 538  Q
    |||||| |||| | |||||||| ||||||| |||||||| |||||| ||||| || |||  |||||| |||| || ||||||    
T  25376910 aaagatcaacattaaatgagggttagaaaagtcttttaaacaataattataccttaaaatctgtgactttttcttgtaaata 25376991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 389 - 549
Target Start/End: Original strand, 42312399 - 42312567
Alignment:
Q  389 tttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatatt-------aaaaagataaacacttaatgaggggta 481  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||  ||||||||       ||||||| |||||   ||  | || ||    
T  42312399 tttgaatatttttacaaatataccctcataaaaaattgtgaagcataaaatatatcctctaatattaaaaaaaaaaaagacaaacataaaacaaaggata 42312498  T
Q  482 gaaaaatcttttaagcaataactatacttttaaagttgtga-cattttattataaatagaaccaaataa 549  Q
    ||||| ||||||||||||||||||||| || ||||||||||  ||||| |||||||||  |||||||||    
T  42312499 gaaaagtcttttaagcaataactataccttaaaagttgtgattatttttttataaataagaccaaataa 42312567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 398 - 459
Target Start/End: Complemental strand, 27032279 - 27032218
Alignment:
Q  398 ttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaa 459  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||    
T  27032279 ttttacaaatatacccttatagaaagttgtgaaatattaaatacatttactaatattaaaaa 27032218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 408 - 545
Target Start/End: Complemental strand, 34319682 - 34319546
Alignment:
Q  408 atacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactata 507  Q
    ||||||| |||||||||||| |||||||||||| ||| |  ||||||||||||| ||||| ||||  | ||||||||||   |||||| |||||||   |    
T  34319682 ataccctcataaaaaattgtaaaacattaaatatatccataaatattaaaaagaaaaaca-ttaaataagggtagaaaagctttttaaacaataaccgca 34319584  T
Q  508 cttttaaagttgtgacattttattataaatagaaccaa 545  Q
    |||| ||| |||||||||||| |||||||||| |||||    
T  34319583 ctttaaaaattgtgacattttcttataaataggaccaa 34319546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 538
Target Start/End: Complemental strand, 21128246 - 21128097
Alignment:
Q  389 tttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaat 488  Q
    |||||||||||||| |||||||| |||||   ||| ||||||||||  || | |   |||||||| |||||||||||||   |||||||| | ||||| |    
T  21128246 tttgaatatttttataaatatactcttattggaaaatgtgaaacatataacatactcactaatataaaaaagataaacataaaatgagggttggaaaagt 21128147  T
Q  489 cttttaagcaataactatacttttaaagttgtgacattttattataaata 538  Q
    |||||||  ||||| ||||| || |||||| ||||||||| |||||||||    
T  21128146 cttttaaaaaataaatatacattaaaagttatgacattttcttataaata 21128097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 337 - 453
Target Start/End: Original strand, 32599705 - 32599820
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    ||||||||| || |||| | |||| ||||||| |||| ||||| |  || ||||| |||| ||||| ||||||||| | ||||||||||||||| |||||    
T  32599705 aagaaaaacaaaaaaacttcaaaatcaatacattcattaattagtaaaacttttt-aataattttataaatataccttcataaaaaattgtgaagcatta 32599803  T
Q  437 aatacatctactaatat 453  Q
    |||||||| ||||||||    
T  32599804 aatacatccactaatat 32599820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 25382552 - 25382459
Alignment:
Q  337 aagaaaaaccaagaaa-cattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaa 430  Q
    |||||||||||| ||| ||| |||| ||| ||||| || |||||| |||||||||||||| |||| |||||||||||||||| |||| |||||||    
T  25382552 aagaaaaaccaaaaaaacatcaaaatcaagacaataattaattatggcaattttttgaatgtttt-acaaatatacccttatgaaaatttgtgaa 25382459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 44720548 - 44720633
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaataca 442  Q
    |||| ||||||||||||  |||| || ||  ||||||||||||||| ||||||| ||| |||||||||||  ||||||||||||||    
T  44720548 aaaatcaatacaatcattgattaatgtaacattttgaatatttttataaatatatcctcataaaaaattgcaaaacattaaataca 44720633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 461
Target Start/End: Complemental strand, 4960601 - 4960533
Alignment:
Q  393 aatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 461  Q
    |||||||||||||||||| | ||||| ||| |||||||||||||||||||   |||||| |||||||||    
T  4960601 aatatttttacaaatatatctttatagaaagttgtgaaacattaaatacaatcactaatgttaaaaaga 4960533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 446 - 545
Target Start/End: Complemental strand, 54864017 - 54863918
Alignment:
Q  446 actaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 545  Q
    ||||||||| ||||||| |||| | |||||| | |||||||  ||||||| |||||| | ||| || ||||||||||| |||| |||||||||| |||||    
T  54864017 actaatattgaaaagatcaacattaaatgagagttagaaaagccttttaaacaataaatgtaccttaaaagttgtgactttttcttataaataggaccaa 54863918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 393 - 439
Target Start/End: Complemental strand, 2632531 - 2632485
Alignment:
Q  393 aatatttttacaaatatacccttataaaaaattgtgaaacattaaat 439  Q
    |||||||||||||||||   |||||||||||||||||||||||||||    
T  2632531 aatatttttacaaatatcttcttataaaaaattgtgaaacattaaat 2632485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 40413086 - 40413128
Alignment:
Q  417 taaaaaattgtgaaacattaaatacatctactaatattaaaaa 459  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||    
T  40413086 taaaaaattgtgaaacattaaatatatccactaatatttaaaa 40413128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 3e-47; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 324 - 539
Target Start/End: Original strand, 40344864 - 40345078
Alignment:
Q  324 cggtctttattataagaaaaaccaagaaa-cattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaa 422  Q
    ||||| |||||||||||||||  || ||| ||| ||||||||| || ||||  |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40344864 cggtccttattataagaaaaataaaaaaaacatcaaaaccaatgcagtcattgattattgcaactttttgaatatttttacaaatatacccttataaaaa 40344963  T
Q  423 attgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtga 522  Q
    |||||||| |||||||||| || |||||||||||||||| ||| | | ||||||||||| |||| ||| ||||||||| |||| || || ||||||||||    
T  40344964 attgtgaaccattaaatac-tc-actaatattaaaaagacaaatattaaatgaggggtataaaagtctcttaagcaatgactacaccttaaaagttgtga 40345061  T
Q  523 cattttattataaatag 539  Q
    |||||| ||||| ||||    
T  40345062 cattttcttatagatag 40345078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 341 - 546
Target Start/End: Complemental strand, 45261559 - 45261357
Alignment:
Q  341 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 440  Q
    |||||||| |||||| ||||||||| || ||||  |||| || || |||||||| ||||||||||||||||||| |  ||||||||||||||||||||||    
T  45261559 aaaaccaaaaaacatcaaaaccaatgcattcattgattaatgtaactttttgaacatttttacaaatataccctca--aaaaattgtgaaacattaaata 45261462  T
Q  441 catctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaataga 540  Q
    || | ||||||||| |||||| ||||| | ||| |||| ||||||| || ||||||||||||||| |  || |||||||||||||||| ||||||||||     
T  45261461 cacccactaatatttaaaagagaaacattaaat-agggatagaaaagtcatttaagcaataactacagcttaaaagttgtgacattttcttataaatagg 45261363  T
Q  541 accaaa 546  Q
    ||||||    
T  45261362 accaaa 45261357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 340 - 546
Target Start/End: Original strand, 46918412 - 46918617
Alignment:
Q  340 aaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaat 439  Q
    ||||| ||| |||||| ||||||||| | | ||| |||| ||| || ||||| || ||||||||||||||||||||||| || ||| |||||||||||||    
T  46918412 aaaaatcaaaaaacatcaaaaccaatgccaacattaattgttgtaaatttttaaacatttttacaaatatacccttatagaatattttgaaacattaaat 46918511  T
Q  440 acatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    ||||  | |||||||||||||| | ||| | ||||| || || |||| ||||||||||||||||||| | || ||| |||||||||||| ||||||||||    
T  46918512 acattcattaatattaaaaagacagacattaaatgaaggataaaaaagtcttttaagcaataactat-ccttaaaaattgtgacattttcttataaatag 46918610  T
Q  540 aaccaaa 546  Q
     ||||||    
T  46918611 gaccaaa 46918617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 387 - 544
Target Start/End: Original strand, 17003573 - 17003729
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 486  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||| ||| | ||||||||| |||||| ||||| ||||  |||| || ||||    
T  17003573 tttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaaca-ttaaatagggataaaaaa 17003670  T
Q  487 atcttttaagcaataactatacttttaaagttgtgaca-ttttattataaatagaacca 544  Q
     || ||||||||||||||| || || |||||||||||| |||| |||||||||| ||||    
T  17003671 gtcatttaagcaataactacaccttaaaagttgtgacattttttttataaataggacca 17003729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 387 - 538
Target Start/End: Complemental strand, 35455456 - 35455309
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 486  Q
    ||||||||||||| ||||||||||| |  |||||||||||||||||||||||||||   ||||||||| |||  ||||||| | ||| |||| |||||||    
T  35455456 tttttgaatatttctacaaatatactc--ataaaaaattgtgaaacattaaatacactcactaatatttaaat-ataaacattaaat-agggatagaaaa 35455361  T
Q  487 atcttttaagcaataactatacttttaaagttgtgacattttattataaata 538  Q
     || |||||||||||| || || || |||||||||||||||| |||||||||    
T  35455360 gtcatttaagcaataattacaccttaaaagttgtgacattttcttataaata 35455309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 387 - 545
Target Start/End: Original strand, 8825355 - 8825511
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaa--cacttaatgaggggtagaa 484  Q
    ||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||   | ||||||||||   |||||  || | ||||| || |||||    
T  8825355 tttttaaatatttttataaatatacccttataaaaaattgtgtagcattaaatacactcattaatattaaa---ataaagtcattaaatgaaggatagaa 8825451  T
Q  485 aaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 545  Q
    || |||||||||||||||||| ||  ||||| |||||||||||| |||||||||| |||||    
T  8825452 aagtcttttaagcaataactacac-cttaaaattgtgacattttcttataaataggaccaa 8825511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 351 - 538
Target Start/End: Complemental strand, 55452618 - 55452430
Alignment:
Q  351 aacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaa 450  Q
    |||||||||| ||||||||| || |||||||| || ||||| |||  |||| ||||||||| | ||   ||||||||||  ||||||||||| |||||||    
T  55452618 aacattaaaatcaatacaattattaattattgtaacttttttaattcttttgcaaatatactcata---aaaattgtgagtcattaaatacacctactaa 55452522  T
Q  451 ta-ttaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaat---aactatacttttaaagttgtgacattttattataaata 538  Q
    || ||||||||| | | | | | |||||| |||||||||||||||||||||   ||||| | ||| |||||||||||||||| |||||||||    
T  55452521 tacttaaaaagacagatattaattgagggatagaaaaatcttttaagcaataaaaactacattttaaaagttgtgacattttcttataaata 55452430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 387 - 539
Target Start/End: Original strand, 43320133 - 43320279
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 486  Q
    |||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||  ||      |||||||| ||||| | |||  ||| |||||||    
T  43320133 tttttgaatatttttacaaatacacccttataaaaaatcgcgaagcattaaatacattcac------taaaaagacaaacattgaataggggctagaaaa 43320226  T
Q  487 atcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
     |||||||| ||||||| | || || |||||||||||||||| ||||||||||    
T  43320227 gtcttttaaacaataaccacaccttaaaagttgtgacattttcttataaatag 43320279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 350 - 442
Target Start/End: Complemental strand, 36659373 - 36659281
Alignment:
Q  350 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaataca 442  Q
    |||||| |||| |||||||||| | ||||| || || ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  36659373 aaacatcaaaatcaatacaatcgttaattaatgtaactttttgaatatttttacaagtataccctaataaaaaattatgaaacattaaataca 36659281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 357 - 508
Target Start/End: Original strand, 30041272 - 30041423
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||||||| |||||||| | |  ||| |||||||||||| |||||| ||||||||||| ||||| | |||||||  |||||||| | | |||||||||||    
T  30041272 aaaaccaagacaatcattagtggttgtaattttttgaatgtttttataaatataccctcataaagatttgtgaagtattaaatataaccactaatattaa 30041371  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatac 508  Q
    ||||| ||||| | | | |||| ||||||| |||||||| |||||| |||||    
T  30041372 aaagacaaacattaattaagggttagaaaagtcttttaaacaataaatatac 30041423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 358 - 459
Target Start/End: Complemental strand, 28695727 - 28695624
Alignment:
Q  358 aaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatat--acccttataaaaaattgtgaaacattaaatacatctactaatatta 455  Q
    ||||||||| |||||| ||||| || || |||||||||||||||||||||||  || |||||||||| ||||||||||||||  |||  |||||||||||    
T  28695727 aaaccaatataatcattaattagtgtaactttttgaatatttttacaaatatacacgcttataaaaagttgtgaaacattaaccacagttactaatatta 28695628  T
Q  456 aaaa 459  Q
    ||||    
T  28695627 aaaa 28695624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 324 - 437
Target Start/End: Original strand, 25294788 - 25294904
Alignment:
Q  324 cggtctttattataagaaa---aaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaa 420  Q
    ||||| |||||||||||||   |||||| |||||| || |||||||||||||| ||||| || || | ||| |||||||||| ||| |||| || |||||    
T  25294788 cggtccttattataagaaacaaaaccaaaaaacatcaataccaatacaatcattaattaatgaaactatttaaatatttttataaacatactctcataaa 25294887  T
Q  421 aaattgtgaaacattaa 437  Q
    |||||||||||||||||    
T  25294888 aaattgtgaaacattaa 25294904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 436 - 538
Target Start/End: Original strand, 32211834 - 32211936
Alignment:
Q  436 aaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 535  Q
    ||||||| | |||||||||||||||| ||||| | ||| | |||||||||| |||||||| ||||||||| || || |||||||||| ||||| ||||||    
T  32211834 aaatacacccactaatattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataa 32211933  T
Q  536 ata 538  Q
    |||    
T  32211934 ata 32211936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 421 - 537
Target Start/End: Original strand, 25295082 - 25295198
Alignment:
Q  421 aaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgt 520  Q
    ||||||||||||||| |||| | | |||||||||||||||| || || | |||||||| || |||| |||||||| |||||| || || || ||||||||    
T  25295082 aaattgtgaaacatttaataaacccactaatattaaaaagagaagcattaaatgagggataaaaaagtcttttaaacaataattacaccttaaaagttgt 25295181  T
Q  521 gacattttattataaat 537  Q
     ||||||| ||||||||    
T  25295182 aacattttcttataaat 25295198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 478
Target Start/End: Original strand, 43105095 - 43105234
Alignment:
Q  340 aaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaatttttt-gaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 438  Q
    ||||||||| || ||| ||||  || |||||||| |||| ||| |||||||| |||| |||||||||||||||||| ||||||| |||||||  || |||    
T  43105095 aaaaaccaaaaatcatcaaaattaagacaatcattaattgttgtaatttttttgaatgtttttacaaatataccctcataaaaatttgtgaagtatcaaa 43105194  T
Q  439 tacatctactaatattaaaaagataaacacttaatgaggg 478  Q
    || | | ||||||||| ||||||| |||| | ||||||||    
T  43105195 tatacccactaatattgaaaagatcaacattaaatgaggg 43105234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 380 - 461
Target Start/End: Complemental strand, 24650280 - 24650199
Alignment:
Q  380 ttgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 461  Q
    ||||||||||||  ||| ||||||||||||||  |||||||||||||||||| ||||||||     ||||||||||||||||    
T  24650280 ttgcaattttttttatacttttacaaatatacttttataaaaaattgtgaaatattaaatatgctcactaatattaaaaaga 24650199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 353 - 461
Target Start/End: Complemental strand, 49983896 - 49983786
Alignment:
Q  353 cattaaaaccaatacaatcatcaattattgcaattttttgaa---tatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctacta 449  Q
    |||||||||||| |||||||| | | |||| || ||||||||   | |||||||||||||||||| ||||||| |||||||  |||||||| | | ||||    
T  49983896 cattaaaaccaagacaatcattagtgattgtaa-tttttgaatgttttttttacaaatataccctcataaaaatttgtgaagtattaaatatacccacta 49983798  T
Q  450 atattaaaaaga 461  Q
    ||||||||||||    
T  49983797 atattaaaaaga 49983786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 462
Target Start/End: Complemental strand, 22923776 - 22923708
Alignment:
Q  394 atatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagat 462  Q
    ||||||||||||||||||| | ||||||| ||||||   |||||||| | |||||||||||||||||||    
T  22923776 atatttttacaaatataccttcataaaaatttgtgatgtattaaatatacctactaatattaaaaagat 22923708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 384 - 495
Target Start/End: Complemental strand, 30577943 - 30577832
Alignment:
Q  384 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtaga 483  Q
    |||||||| ||| |||||||||||||||| | |||||||   |||||  |||||||| |||||||||| || ||||||  |||| | |||||||| ||||    
T  30577943 aattttttaaatgtttttacaaatataccatcataaaaatgagtgaagtattaaatatatctactaatgttgaaaagaccaacattaaatgagggataga 30577844  T
Q  484 aaaatcttttaa 495  Q
    ||  ||||||||    
T  30577843 aacgtcttttaa 30577832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 27828599 - 27828545
Alignment:
Q  386 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 440  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||| | ||||||    
T  27828599 ttttttgaatatttttacaaatataccttcataaaaatttgtgaaatactaaata 27828545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 42279232 - 42279285
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 440  Q
    ||||| |||||||||||||||||||||| ||||||| || ||||| ||||||||    
T  42279232 ttttttaatatttttacaaatataccctcataaaaatttatgaaatattaaata 42279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 534
Target Start/End: Complemental strand, 49983646 - 49983561
Alignment:
Q  449 aatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattata 534  Q
    ||||||||||||| ||||| | |||||||| ||||||| |||||||| |||||| | ||  || ||||||||||| |||| |||||    
T  49983646 aatattaaaaagacaaacattaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaagttgtgactttttcttata 49983561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 32211767 - 32211843
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatataccc 413  Q
    ||||||||| || |||||| ||||||||| || |||| ||||| || ||||||||  ||||||||||||||| ||||    
T  32211767 aagaaaaacaaaaaaacatcaaaaccaatgcactcattaattagtgtaattttttttatatttttacaaatacaccc 32211843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 48271745 - 48271817
Alignment:
Q  388 ttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaag 460  Q
    |||||||||||| |||||||||||||| ||  ||| || |||| |||||||| ||  ||||||||||||||||    
T  48271745 ttttgaatatttatacaaatataccctcatggaaagttttgaagcattaaatgcacatactaatattaaaaag 48271817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 459
Target Start/End: Original strand, 20265806 - 20265937
Alignment:
Q  329 tttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatattt-ttacaaatatacccttataaaaaattgt 427  Q
    |||||||| |||| ||  || |||||| ||||||||| ||| ||| || | ||| || ||||| ||||||  ||||||||||| ||||||||||| || |    
T  20265806 tttattatgagaagaaaaaaaaaacatcaaaaccaattcaaccattaacttttgtaactttttaaatattacttacaaatatatccttataaaaagttat 20265905  T
Q  428 gaaacattaaatacatctactaatattaaaaa 459  Q
    ||||| ||||||| || || ||||| ||||||    
T  20265906 gaaacgttaaatatatttaataatactaaaaa 20265937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 498 - 548
Target Start/End: Complemental strand, 38854655 - 38854605
Alignment:
Q  498 aataactatacttttaaagttgtgacattttattataaatagaaccaaata 548  Q
    ||||| |||||||| ||||||||||  |||| |||||||||||||||||||    
T  38854655 aataaatatactttaaaagttgtgaatttttcttataaatagaaccaaata 38854605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 538
Target Start/End: Complemental strand, 47860651 - 47860601
Alignment:
Q  488 tcttttaagcaataactatacttttaaagttgtgacattttattataaata 538  Q
    ||||||||| ||||||||||| || |||| ||||||||||| |||||||||    
T  47860651 tcttttaagtaataactataccttaaaagatgtgacattttcttataaata 47860601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 536
Target Start/End: Original strand, 52596618 - 52596771
Alignment:
Q  383 caattttttgaatatttttacaaatatacccttat-aaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggta 481  Q
    ||||||||||||||||||||| |||||||| | || |||||||||||||  |||  ||| ||| ||||| | ||||| || ||||| ||||  | |||||    
T  52596618 caattttttgaatatttttacgaatataccatcataaaaaaattgtgaagtatttgatatatccactaaaactaaaaggacaaaca-ttaaataagggta 52596716  T
Q  482 gaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    ||||  | ||||||| |||||||  || || |||||||| | ||||| |||||||    
T  52596717 gaaattttttttaagtaataactgcaccttaaaagttgtaatatttttttataaa 52596771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 440
Target Start/End: Complemental strand, 40729817 - 40729772
Alignment:
Q  395 tatttttacaaatatacccttataaaaaattgtgaaacattaaata 440  Q
    |||||||||||||||| | ||||| |||||| ||||||||||||||    
T  40729817 tatttttacaaatataactttatagaaaattatgaaacattaaata 40729772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 2e-45; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 338 - 539
Target Start/End: Complemental strand, 38496674 - 38496473
Alignment:
Q  338 agaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaa 437  Q
    ||||||||||| |||||| ||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||| |||||||  || ||||||||||    
T  38496674 agaaaaaccaaaaaacatcaaaaccaatgctatcattaattagtgtaactttttgaatatttttacaaatataccctgataaaaatgtgcgaaacattaa 38496575  T
Q  438 atacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaat 537  Q
    ||||| |||||||||||||||| | ||||  | ||| |||||||||||  |||||||| |||||||||||| || ||| || ||||||||| ||||||||    
T  38496574 atacacctactaatattaaaaatacaaacgttaaataaggggtagaaaggtcttttaaacaataactataccttaaaaattctgacattttcttataaat 38496475  T
Q  538 ag 539  Q
    ||    
T  38496474 ag 38496473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 337 - 535
Target Start/End: Complemental strand, 3269000 - 3268802
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| |||||| |||| |||| |||  || ||||| |  || |||||||||||||||||||||||||||||||||||| ||||||| | |||    
T  3269000 aagaaaaaccaaaaaacatcaaaatcaatgcaactattaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagcctta 3268901  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 535  Q
    |||||| ||| |||||||||||| | ||||| | ||| |||||||||||| ||||||| |||||||||| || || |||||||||| ||||| ||||||    
T  3268900 aatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3268802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 337 - 535
Target Start/End: Complemental strand, 3269559 - 3269361
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| |||||| |||| |||| |||  || ||||| |  || |||||||||||||||||||||||||||||||||||| ||||||| | |||    
T  3269559 aagaaaaaccaaaaaacatcaaaatcaatgcaactattaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagcctta 3269460  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 535  Q
    |||||| ||| |||||||||||| | ||||| | ||| |||||||||||| ||||||| |||||||||| || || |||||||||| ||||| ||||||    
T  3269459 aatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3269361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 337 - 535
Target Start/End: Complemental strand, 3270118 - 3269920
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| |||||| |||| |||| |||  || ||||| |  || |||||||||||||||||||||||||||||||||||| ||||||| | |||    
T  3270118 aagaaaaaccaaaaaacatcaaaatcaatgcaactattaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagcctta 3270019  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 535  Q
    |||||| ||| |||||||||||| | ||||| | ||| |||||||||||| ||||||| |||||||||| || || |||||||||| ||||| ||||||    
T  3270018 aatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3269920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 337 - 539
Target Start/End: Complemental strand, 40442920 - 40442718
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||| | |||||| |||| ||||  |||||| ||||| |  ||| ||||||||||||||| | ||||||||||||||||| ||||||| |||||    
T  40442920 aagaaaaaccgaaaaacatcaaaatcaatgtaatcattaattagtataatcttttgaatatttttatagatatacccttataaaaagttgtgaagcatta 40442821  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    ||| || |||||||||||||||||||||||| | ||| ||||||| |||| | |||||| |||||| || || || |||||||||||||||| |||||||    
T  40442820 aatgcacctactaatattaaaaagataaacaataaataaggggtataaaagttttttaaacaataattacaccttaaaagttgtgacattttcttataaa 40442721  T
Q  537 tag 539  Q
    |||    
T  40442720 tag 40442718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 341 - 546
Target Start/End: Complemental strand, 38214311 - 38214106
Alignment:
Q  341 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 440  Q
    |||||||| |||||| |||||||||||||||||  ||||  | || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  38214311 aaaaccaaaaaacatcaaaaccaatacaatcattgattaaagaaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaata 38214212  T
Q  441 catctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaataga 540  Q
    ||  ||||||||||||||||| ||  | | |||||||| || |||| |||||||| |||||| || || || ||||||||||  |||| |||||||| |     
T  38214211 cacatactaatattaaaaagagaagtattaaatgagggatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattgg 38214112  T
Q  541 accaaa 546  Q
    ||||||    
T  38214111 accaaa 38214106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 337 - 546
Target Start/End: Complemental strand, 40504077 - 40503868
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||| | |||||| |||| ||||  |||||| ||||| || ||| ||||||||||||||||| ||||||||| ||||||| ||||||| |||||    
T  40504077 aagaaaaaccgaaaaacatcaaaatcaatgtaatcattaattagtgtaatcttttgaatatttttacagatataccctcataaaaagttgtgaagcatta 40503978  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    ||| || |||||||||||||||||| ||||| | ||| ||||||| |||| | |||||| |||||| || || || |||||||||||||||| |||||||    
T  40503977 aatgcacctactaatattaaaaagacaaacaataaataaggggtataaaagttttttaaacaataattacaccttaaaagttgtgacattttcttataaa 40503878  T
Q  537 tagaaccaaa 546  Q
    | | ||||||    
T  40503877 tgggaccaaa 40503868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 337 - 538
Target Start/End: Complemental strand, 16781463 - 16781263
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    ||||||||||||  ||||| |||||||||  |||||| ||||| |  ||||||||||||| || |||||||||||||| || |||||| |||||||||||    
T  16781463 aagaaaaaccaaataacatcaaaaccaatgtaatcattaattagtctaattttttgaataattatacaaatataccctcattaaaaatggtgaaacatta 16781364  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    |||||| |||||||||||| ||||| ||||| | | | ||| |||||||| |||||||| || ||| |||||  ||||||||||||| |||| |||||||    
T  16781363 aatacacctactaatattacaaagacaaacattaactaaggcgtagaaaagtcttttaaacattaattatac-cttaaagttgtgactttttcttataaa 16781265  T
Q  537 ta 538  Q
    ||    
T  16781264 ta 16781263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 340 - 537
Target Start/End: Original strand, 39063542 - 39063740
Alignment:
Q  340 aaaaaccaagaaacattaaaa-ccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 438  Q
    ||||||||| ||||||||||| |||||||||||||  ||||  | || |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  39063542 aaaaaccaaaaaacattaaaaaccaatacaatcattgattaaagaaactttttgaatatttttacaaatataacctcataaaaaattgtgaaacattaaa 39063641  T
Q  439 tacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaat 537  Q
    ||||   |||||||||||||||| ||  | | ||||||   || |||| |||||||| |||||| || || || ||||||||||  |||| ||||||||    
T  39063642 tacacacactaatattaaaaagagaagtattaaatgagcaatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaat 39063740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 341 - 533
Target Start/End: Complemental strand, 40664433 - 40664240
Alignment:
Q  341 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 440  Q
    |||||||| |||||| ||||||||||||||||| |||||  | || |||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  40664433 aaaaccaaaaaacatcaaaaccaatacaatcattaattaaagaaactttttgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaata 40664334  T
Q  441 catctactaatatt-aaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattat 533  Q
    ||   || ||| || ||||||| || || | |||||||| || |||| ||||||||  ||||| || ||||| | |||||||| ||||| ||||    
T  40664333 cacacaccaatgttaaaaaagagaagcattaaatgagggatataaaagtcttttaaataataaatacactttaagagttgtgaaattttcttat 40664240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 357 - 547
Target Start/End: Complemental strand, 19286062 - 19285872
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||||||||||||| || |||| || ||| ||||| |||| ||||||||||||| || |||| ||| ||||||| ||||||||||||  ||||||||| |    
T  19286062 aaaaccaatacaattattaattgttacaactttttaaataattttacaaatatatccctatagaaagttgtgaaccattaaatacattcactaatattga 19285963  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaat 547  Q
    ||||| ||| | | ||||| || || |||| ||||||| |||||||||| || || ||| |||||||| ||  |||||||||| |||||||    
T  19285962 aaagacaaatattaaatgaaggatataaaagtcttttatgcaataactacaccttaaaacttgtgacaattacttataaataggaccaaat 19285872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 324 - 461
Target Start/End: Complemental strand, 21795055 - 21794914
Alignment:
Q  324 cggtctttattataagaaa---aaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttat-aa 419  Q
    ||||| |||||||||||||   || ||| |||||| |||||||||| ||||||  ||||  | || |||||||||||||||||||||||||||| || ||    
T  21795055 cggtccttattataagaaacaaaatcaaaaaacatcaaaaccaatataatcattgattaaagaaactttttgaatatttttacaaatataccctcataaa 21794956  T
Q  420 aaaattgtgaaacattaaatacatctactaatattaaaaaga 461  Q
    |||||||||||||||||||||||   ||||||||||||||||    
T  21794955 aaaattgtgaaacattaaatacacacactaatattaaaaaga 21794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 357 - 502
Target Start/End: Complemental strand, 32872523 - 32872378
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||||||| |||||||| | |  ||| |||||||||||| |||||||||||||||||| |||||||||||||||  |||||||| | | |||||||||||    
T  32872523 aaaaccaagacaatcattagtggttgtaattttttgaatgtttttacaaatataccctcataaaaaattgtgaagtattaaatatacccactaatattaa 32872424  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataa 502  Q
    || || ||||| | ||| |||| | ||||| |||||||| ||||||    
T  32872423 aaggacaaacattaaattagggttggaaaagtcttttaaacaataa 32872378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 387 - 538
Target Start/End: Original strand, 4015784 - 4015934
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 486  Q
    |||||||||| || || |||||||||||  | ||||||| ||||||||||||| || |||||||||||| ||||| ||||| | | | ||||||||||||    
T  4015784 tttttgaataattatataaatataccctcgttaaaaattatgaaacattaaatgcacctactaatattacaaagacaaacattaactaaggggtagaaaa 4015883  T
Q  487 atcttttaagcaataactatacttttaaagttgtgacattttattataaata 538  Q
     |||||||| || |||||||| | ||| ||||||||| |||| |||||||||    
T  4015884 gtcttttaaacattaactata-tcttagagttgtgactttttcttataaata 4015934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 357 - 539
Target Start/End: Original strand, 14200333 - 14200514
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||||||| |||||||| | ||||   |||||||||||| |||||||||||||||||| ||||||| |||||||  |||||||| |   ||||||||| |    
T  14200333 aaaaccaagacaatcattagttatcctaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatatactcactaatattga 14200432  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    |||||| |||| | |||||||| || |||| ||||||||  ||||| | ||  || ||||||||||| |||| ||||||||||    
T  14200433 aaagatcaacattaaatgagggttaaaaaagtcttttaaataataaatgtatcttaaaagttgtgac-ttttcttataaatag 14200514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 416
Target Start/End: Complemental strand, 21229685 - 21229606
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatataccctta 416  Q
    |||||||||||| || ||||||||||||| ||||||| |||||||| || ||||||||||||||||||||||||| ||||    
T  21229685 aagaaaaaccaaaaatcattaaaaccaatgcaatcattaattattgtaactttttgaatatttttacaaatatacgctta 21229606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 386 - 541
Target Start/End: Complemental strand, 7011244 - 7011093
Alignment:
Q  386 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaa 485  Q
    |||||||||| ||||||||||||||| || ||||||| |||||||  |||||||| | | ||||||||| |||||||    | | |||||||| ||||||    
T  7011244 ttttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatacccactaatattgaaaagat----attaaatgagggttagaaa 7011149  T
Q  486 aatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaa 541  Q
    | |||||||| |||||| | ||  || ||| ||||||| |||| ||||||||||||    
T  7011148 agtcttttaaacaataaatgtatcttaaaaattgtgactttttcttataaatagaa 7011093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 386 - 495
Target Start/End: Complemental strand, 31405098 - 31404989
Alignment:
Q  386 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaa 485  Q
    ||||||||||||||||||||||||| ||| ||| ||| || ||||  |||||||| ||  |||||||||||||||| ||| | | |||||||| ||||||    
T  31405098 ttttttgaatatttttacaaatatatcctcatagaaatttatgaagtattaaatatatgcactaatattaaaaagacaaatattaaatgagggttagaaa 31404999  T
Q  486 aatcttttaa 495  Q
    | ||||||||    
T  31404998 agtcttttaa 31404989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 461
Target Start/End: Original strand, 44883181 - 44883238
Alignment:
Q  404 aaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 461  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| ||| |||||||    
T  44883181 aaatatacccttataaaaagttgtgaaacattaaatacttctactagtatcaaaaaga 44883238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 387 - 459
Target Start/End: Original strand, 31365037 - 31365109
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaa 459  Q
    ||||| || |||||||||||||||| |||||| ||  |||||||| |||||||||||| ||||||||||||||    
T  31365037 ttttttaaaatttttacaaatatacacttatagaatgttgtgaaatattaaatacatccactaatattaaaaa 31365109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 318 - 441
Target Start/End: Complemental strand, 34309436 - 34309310
Alignment:
Q  318 tcccctcggtctttattataagaaaa---accaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatataccct 414  Q
    |||| |||||| || |||||||||||   ||||| || ||| |||| ||| |||||||| | | |||| ||||||||||||  |||||||||||||||||    
T  34309436 tcccttcggtcctttttataagaaaataaaccaaaaatcatcaaaatcaagacaatcattagtgattgtaattttttgaatgcttttacaaatataccct 34309337  T
Q  415 tataaaaaattgtgaaacattaaatac 441  Q
     ||||||| |||||||  |||||||||    
T  34309336 cataaaaatttgtgaagtattaaatac 34309310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 350 - 434
Target Start/End: Complemental strand, 2761702 - 2761616
Alignment:
Q  350 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaa--atatacccttataaaaaattgtgaaacat 434  Q
    ||||||||||||| || ||||||| ||||| || || |||||||||||||||| ||  ||||| ||| |||||||||||||||||||    
T  2761702 aaacattaaaaccgatgcaatcattaattagtgtaactttttgaatatttttataaatatatatcctcataaaaaattgtgaaacat 2761616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 357 - 528
Target Start/End: Original strand, 34195786 - 34195952
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||| ||||| |||||| || |||||||||||||  || | ||||||| | ||| ||||||| ||||||  ||||||||||||||||| | |||||| ||    
T  34195786 aaaatcaatagaatcattaactattgcaattttta-aacacttttacacaaatatccttatagaaaattacgaaacattaaatacatccattaatatcaa 34195884  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacatttt 528  Q
    ||    | ||| | ||||||||||| |||| || |||||  |||||||||| ||| |||||||| |||||||    
T  34195885 aa----atacattaaatgaggggtaaaaaagtcatttaactaataactatattttaaaagttgtaacatttt 34195952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 547
Target Start/End: Original strand, 3711930 - 3711993
Alignment:
Q  483 aaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaat 547  Q
    |||| |||||||| |||||||||| |||  |||||||||||||||| ||||||||||||||||||    
T  3711930 aaaagtcttttaaacaataactatcctta-aaagttgtgacattttcttataaatagaaccaaat 3711993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 442
Target Start/End: Original strand, 9045520 - 9045621
Alignment:
Q  341 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 440  Q
    |||| ||| ||| |||||||  ||||||||||| ||||| || | |||||| |||||||||||||||||||| |  ||| ||||| | |||||| |||||    
T  9045520 aaaatcaaaaaatattaaaattaatacaatcattaattaatgtagtttttttaatatttttacaaatataccatagtaacaaattataaaacataaaata 9045619  T
Q  441 ca 442  Q
    ||    
T  9045620 ca 9045621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 397 - 528
Target Start/End: Complemental strand, 18423447 - 18423318
Alignment:
Q  397 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 496  Q
    |||||| | |||||||||| || |||||||||||||||||||||| ||  | ||||||  ||||| ||||| |  |||| || ||||||||| ||||||     
T  18423447 tttttatacatatacccttttagaaaattgtgaaacattaaatacgtccgcgaatatt--aaagacaaacattacatgaaggatagaaaaatattttaaa 18423350  T
Q  497 caataactatacttttaaagttgtgacatttt 528  Q
    |||||| || || || ||| || |||||||||    
T  18423349 caataattacacattaaaatttatgacatttt 18423318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 342 - 501
Target Start/End: Original strand, 45723868 - 45724028
Alignment:
Q  342 aaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatac 441  Q
    ||||||| || ||| |||||||| |||||||| | ||  |  |||||||||||| || ||||||||||| | | ||||||| || | ||  ||||||||     
T  45723868 aaaccaaaaatcatcaaaaccaaaacaatcattagttgctctaattttttgaatgttgttacaaatatatcttcataaaaatttataaagtattaaatat 45723967  T
Q  442 atctactaatattaaaaagataaacacttaatgagggg-tagaaaaatcttttaagcaata 501  Q
    | ||||||||||| ||||||  || | | ||||||||| || ||||||||||||| |||||    
T  45723968 acctactaatattgaaaagaccaatattaaatgaggggctaaaaaaatcttttaaacaata 45724028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 430
Target Start/End: Complemental strand, 13027961 - 13027911
Alignment:
Q  380 ttgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaa 430  Q
    |||||| |||||||||||||||||||||||| ||| ||| ||| |||||||    
T  13027961 ttgcaactttttgaatatttttacaaatatatcctcatagaaatttgtgaa 13027911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 350 - 432
Target Start/End: Complemental strand, 28239284 - 28239202
Alignment:
Q  350 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaac 432  Q
    |||||| |||| ||||  |||||| |||||||  ||||||||||||||| || ||||||||| | || | |||||||||||||    
T  28239284 aaacatcaaaatcaatgtaatcattaattattttaattttttgaatattatttcaaatatactcgtacagaaaattgtgaaac 28239202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 535
Target Start/End: Original strand, 9045639 - 9045699
Alignment:
Q  474 gaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 535  Q
    ||||| ||||||| |||||||| |||||| |||||||  |||||||||||||||| ||||||    
T  9045639 gagggatagaaaattcttttaaacaataattatactta-aaagttgtgacattttcttataa 9045699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 37201439 - 37201508
Alignment:
Q  356 taaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaatt 425  Q
    |||||| ||||||||||| |||| ||| || ||||  ||||||||||||||||| |  ||||||||||||    
T  37201439 taaaactaatacaatcattaattgttgtaacttttaaaatatttttacaaatatgcttttataaaaaatt 37201508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 359 - 546
Target Start/End: Complemental strand, 51453 - 51266
Alignment:
Q  359 aaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaa 458  Q
    ||||||||||||||| ||||| || ||  |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| | ||||| |||||||    
T  51453 aaccaatacaatcattaattaatgtaacattttgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacaccaactaaaattaaaa 51354  T
Q  459 agataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 546  Q
    ||| ||  | | |||||||| || |||||||||||||||||||| || || || |||||||||||||||  |||||||||||||||||    
T  51353 agagaattattaaatgagggataaaaaaatcttttaagcaataaatacaccttaaaagttgtgacatttacttataaatagaaccaaa 51266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 3e-44; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 337 - 548
Target Start/End: Complemental strand, 8251438 - 8251227
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| |||||| |||||||||||| |||| ||||| || | ||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  8251438 aagaaaaaccaaaaaacatcaaaaccaatacactcattaattagtgtagttttttgaatatttttacaaatataccctcataaaaaattgtgaagcatta 8251339  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    |||| |   |||||||||||||||| || || | ||| | ||| | |||  ||||||||||||||| || || || |||||||||| ||||| |||||||    
T  8251338 aataaactcactaatattaaaaagacaaccattaaataatggggaaaaaggtcttttaagcaataattacaccttaaaagttgtgatattttcttataaa 8251239  T
Q  537 tagaaccaaata 548  Q
    ||| ||||||||    
T  8251238 taggaccaaata 8251227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 397 - 546
Target Start/End: Complemental strand, 36054958 - 36054809
Alignment:
Q  397 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 496  Q
    |||||| |||||||||||||| |||||||| |||  |||||||||||| |||||||||||||||| ||||| | | | ||||||| |||| ||||||||     
T  36054958 tttttataaatatacccttattaaaaattgggaagtattaaatacatccactaatattaaaaagacaaacattaattaaggggtataaaagtcttttaaa 36054859  T
Q  497 caataactatacttttaaagttgtgacattttattataaatagaaccaaa 546  Q
    |||||| ||||| || |||||||||||||||| |||||||||| ||||||    
T  36054858 caataaatataccttaaaagttgtgacattttcttataaataggaccaaa 36054809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 357 - 545
Target Start/End: Complemental strand, 31659034 - 31658847
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||| ||||||| |||| ||||| |  ||||||||||||||||||||||||||| ||| ||||||| || || | ||||||||||||| |||| ||||||    
T  31659034 aaaatcaatacactcattaattagtataattttttgaatatttttacaaatatatcctcataaaaa-ttatgcagcattaaatacatccactagtattaa 31658936  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 545  Q
    ||||| ||||| | ||| | || || |||| |||||||| ||||||||| |  || |||||||||| ||||| ||||||||||||||||    
T  31658935 aaagacaaacattaaataaaggttaaaaaagtcttttaaacaataactacatcttaaaagttgtgatattttcttataaatagaaccaa 31658847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 384 - 539
Target Start/End: Complemental strand, 1445508 - 1445353
Alignment:
Q  384 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtaga 483  Q
    ||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||   ||||||||  |||||| ||||| ||||  |||| ||||    
T  1445508 aattttttgaatacttttacaaatataccttcattaaaaattgtgaaacattaaatacactcactaatatctaaaagagaaaca-ttaaatagggataga 1445410  T
Q  484 aaaatcttttaagcaataac-tatacttttaaagttgtgacattttattataaatag 539  Q
    ||| || ||||||||||||| || || || |||||||||||||||| ||||||||||    
T  1445409 aaagtcatttaagcaataacttacaccttaaaagttgtgacattttcttataaatag 1445353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 341 - 504
Target Start/End: Complemental strand, 2207968 - 2207806
Alignment:
Q  341 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 440  Q
    ||||| || |||||| ||||||| |||| |||| | ||| || || |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  2207968 aaaacaaaaaaacatcaaaaccattacactcattatttagtgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaagcattaaata 2207870  T
Q  441 catctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataact 504  Q
    || | | |||||||||||| | ||||| | ||| |||||||||||| ||||| | |||||||||    
T  2207869 cacccattaatattaaaaatacaaacattaaataaggggtagaaaattctttaacgcaataact 2207806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 387 - 545
Target Start/End: Original strand, 16890264 - 16890425
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatat---taaaaagataaacacttaatgaggggtaga 483  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |   ||||||||   |||||| | ||||| | ||| | |||||||    
T  16890264 tttttgaatatttttacaaatataccctcataaaaaattgtgaaacattaaataaactcactaatatttataaaaaaacaaacaataaataaagggtaga 16890363  T
Q  484 aaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 545  Q
    ||| ||||| || || ||||||||| || |||||||||| |||||  ||||||||| |||||    
T  16890364 aaagtctttgaaacactaactataccttaaaagttgtgatattttcatataaataggaccaa 16890425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 387 - 503
Target Start/End: Complemental strand, 2152473 - 2152356
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatatt-aaaaagataaacacttaatgaggggtagaaa 485  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |    |||||||| ||||||||||||| | ||| |||||||||||    
T  2152473 tttttgaatatttttataaatatacccttataaaaaattgtgaagcattaaatagactcgctaatattaaaaaagataaacattaaataaggggtagaaa 2152374  T
Q  486 aatcttttaagcaataac 503  Q
    | ||||||||| ||||||    
T  2152373 agtcttttaagtaataac 2152356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 357 - 545
Target Start/End: Original strand, 2520099 - 2520285
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatct-actaatatta 455  Q
    |||||||||||| |||| ||||| || || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| | |||||||     
T  2520099 aaaaccaatacattcattaattaatgtaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatac-tctcaataatattt 2520197  T
Q  456 aaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 545  Q
    |||| |  |||| | |||| | ||||| ||| ||| |||||||||||||| |  || ||| |||||||||||| |||||||| |||||||    
T  2520198 aaaaaaggaacattaaatg-gaggtag-aaagtctcttaagcaataactacatcttaaaatttgtgacattttcttataaattgaaccaa 2520285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 340 - 547
Target Start/End: Original strand, 38209468 - 38209675
Alignment:
Q  340 aaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaat 439  Q
    ||||| ||| || ||| |||||||| | |||||| | || ||| |||||||| |||||||||| |||||||||||| |||||| |||||||  ||| |||    
T  38209468 aaaaatcaaaaatcatcaaaaccaagataatcattacttgttgaaattttttaaatatttttataaatatacccttttaaaaatttgtgaagtatttaat 38209567  T
Q  440 acatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    | | | ||||||||| ||||||  |||| | |||||||| |||| || |||||||| |||||| | ||| || ||||||||||| |||| |||||||||     
T  38209568 atacccactaatattgaaaagaccaacattaaatgagggttagagaagtcttttaaacaataaatgtaccttaaaagttgtgactttttcttataaatat 38209667  T
Q  540 aaccaaat 547  Q
     |||||||    
T  38209668 gaccaaat 38209675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 393 - 467
Target Start/End: Original strand, 30870743 - 30870817
Alignment:
Q  393 aatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaaca 467  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || |||||    
T  30870743 aatattttgacaaatatacccttataaaaaattgtgaaacattaaatatatccactaatattaaaatgacaaaca 30870817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 30653627 - 30653701
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 461  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||   |||| |||||||||||    
T  30653627 tttttgaataattttacaaatataccctcataaaaatttgtgaaacattaaatacacaaactagtattaaaaaga 30653701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 384 - 534
Target Start/End: Original strand, 36408178 - 36408327
Alignment:
Q  384 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtaga 483  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| ||  ||||| || ||| |||||||||||||||| ||||| | || ||||| || |    
T  36408178 aattttttgaatgtttttacaaatataccctcataaaaatttgttaagtattaattatatccactaatattaaaaagacaaacattaaacgagggttaaa 36408277  T
Q  484 aaaatcttttaagcaataactatacttttaaagttgtgacattttattata 534  Q
    ||| | | |||| |||||| | |||  ||||||||||||| |||| |||||    
T  36408278 aaagtttgttaaacaataaatgtac-cttaaagttgtgactttttcttata 36408327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 40314366 - 40314300
Alignment:
Q  388 ttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatatt 454  Q
    |||| |||||||||||||||||| | | |||||||||| ||||||||||||||||||||| ||||||    
T  40314366 ttttaaatatttttacaaatatatcttcataaaaaattatgaaacattaaatacatctacaaatatt 40314300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 544
Target Start/End: Original strand, 30112485 - 30112578
Alignment:
Q  451 tattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaacca 544  Q
    ||||||||||| | ||| | || ||||| || ||||||||||||||||||||||| || || ||| |||||||||||| |||||||||| ||||    
T  30112485 tattaaaaagacatacattaaacgagggataaaaaaatcttttaagcaataactacaccttaaaatttgtgacattttcttataaataggacca 30112578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 339 - 459
Target Start/End: Original strand, 15438258 - 15438378
Alignment:
Q  339 gaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 438  Q
    |||||| ||| |||||| |||| ||||   ||||| |||| ||| ||||||||  | ||||||||||||||| |||| || ||  ||| |||||||||||    
T  15438258 gaaaaatcaaaaaacatcaaaatcaatgttatcattaattgttgtaattttttatacatttttacaaatataaccttttagaatgttgcgaaacattaaa 15438357  T
Q  439 tacatctactaatattaaaaa 459  Q
    |||||| ||||||||||||||    
T  15438358 tacatccactaatattaaaaa 15438378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 339 - 459
Target Start/End: Original strand, 15529562 - 15529682
Alignment:
Q  339 gaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 438  Q
    |||||| ||| |||||| |||| ||||   ||||| |||| ||| ||||||||  | ||||||||||||||| |||| || ||  ||| |||||||||||    
T  15529562 gaaaaatcaaaaaacatcaaaatcaatgttatcattaattgttgtaattttttatacatttttacaaatataaccttttagaatgttgcgaaacattaaa 15529661  T
Q  439 tacatctactaatattaaaaa 459  Q
    |||||| ||||||||||||||    
T  15529662 tacatccactaatattaaaaa 15529682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 440 - 540
Target Start/End: Complemental strand, 40694331 - 40694231
Alignment:
Q  440 acatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    ||||| ||| ||||||||| || |||||||  || |||||||||||| ||||||||||||||| || || |  |||||||||| ||||| ||||||||||    
T  40694331 acatccactgatattaaaatgacaaacactatataaggggtagaaaagtcttttaagcaataattacacctaaaaagttgtgatattttcttataaatag 40694232  T
Q  540 a 540  Q
    |    
T  40694231 a 40694231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 29917099 - 29916965
Alignment:
Q  404 aaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataac 503  Q
    ||||||||||||| |||||| |||||| |||||||||||   |||||||||||||| | ||  | | |||||| | ||||||  | ||||||| |||||     
T  29917099 aaatataccctta-aaaaaactgtgaagcattaaatacactcactaatattaaaaaaagaagtattaaatgagagatagaaatgttttttaagtaataat 29917001  T
Q  504 tatacttttaaagttgtgacattttattataaatag 539  Q
    || | ||| |||||||| ||||||| ||||||||||    
T  29917000 tacattttaaaagttgtaacatttttttataaatag 29916965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 548
Target Start/End: Complemental strand, 11778193 - 11778029
Alignment:
Q  387 tttttgaatatttttacaaatatac---ccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtaga 483  Q
    ||||||||| |||||| ||||||||   |||||||  || ||| |||| |||||||| || || |||||||||||||| ||||| | ||| |||| ||      
T  11778193 tttttgaatttttttataaatatacggcccttataggaatttgagaaatattaaatatatttattaatattaaaaagacaaacattaaataagggttaag 11778094  T
Q  484 aaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaata 548  Q
    ||| ||||||| | ||||  || |  || ||| ||||||| |||| |||||||||||||||||||    
T  11778093 aaagtcttttacgaaatagatacatcttaaaaattgtgaccttttcttataaatagaaccaaata 11778029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 489 - 539
Target Start/End: Original strand, 30654260 - 30654310
Alignment:
Q  489 cttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    ||||||||||||||||| ||||| |||||||||| ||||| ||||| ||||    
T  30654260 cttttaagcaataactacactttaaaagttgtgatattttcttatatatag 30654310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 545
Target Start/End: Complemental strand, 35431633 - 35431579
Alignment:
Q  491 tttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 545  Q
    ||||| |||| |||||| ||| |||||||||||||||| |||||||||| |||||    
T  35431633 tttaaacaatgactataatttaaaagttgtgacattttcttataaataggaccaa 35431579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 461
Target Start/End: Complemental strand, 27518600 - 27518543
Alignment:
Q  404 aaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 461  Q
    |||||| |||| ||||||| |||||| | ||||||| |||| ||||||||||||||||    
T  27518600 aaatatgccctcataaaaagttgtgatatattaaatgcatccactaatattaaaaaga 27518543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 337 - 547
Target Start/End: Complemental strand, 41508302 - 41508092
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    ||||||||| || ||||||  ||||||||||| | || ||||| || || ||||||||| |||||||||||||||||| ||||||||||||||| |||||    
T  41508302 aagaaaaactaaaaaacatcgaaaccaatacacttattaattagtgtaactttttgaatgtttttacaaatataccctcataaaaaattgtgaagcatta 41508203  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    |||||| | |||||||||||||||| ||||| | ||| ||||||| |||| |||||||||||||||||| || || ||| |||||| ||||| |||||      
T  41508202 aatacacccactaatattaaaaagacaaacattaaataaggggtaaaaaagtcttttaagcaataactacaccttaaaaattgtgatattttcttatatt 41508103  T
Q  537 tagaaccaaat 547  Q
    ||| |||||||    
T  41508102 taggaccaaat 41508092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 387 - 546
Target Start/End: Complemental strand, 20949224 - 20949066
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 486  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||| |||||| | ||| ||||  |||| || ||||    
T  20949224 tttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaatacacatactaatattcaaaagagagaca-ttaaatagggataaaaaa 20949126  T
Q  487 atcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 546  Q
    ||| ||||||||||||||| || || |||||| ||||||||| |||||||||||||||||    
T  20949125 atcatttaagcaataactacaccttaaaagttatgacattttcttataaatagaaccaaa 20949066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 339 - 534
Target Start/End: Complemental strand, 12485476 - 12485281
Alignment:
Q  339 gaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 438  Q
    |||||||||| |||||||||||||||| ||||||| ||||| || || |||||| ||| | ||||||||||||||| |||||||||||||||||| ||||    
T  12485476 gaaaaaccaaaaaacattaaaaccaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaa 12485377  T
Q  439 tacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattata 534  Q
    ||||  |||| | |||||||| | | ||| | ||| |||| ||||||| |||||| | ||||||||| || || |||||||| | |||||||||||    
T  12485376 tacacttactgagattaaaaacaaacacattaaataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttattata 12485281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 388 - 538
Target Start/End: Complemental strand, 7307592 - 7307441
Alignment:
Q  388 ttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggta-gaaaa 486  Q
    ||||| |||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||| | ||||  | ||| ||||| |  ||||    
T  7307592 ttttgcatatttttacaaatatactctcataaaaaattgtgaagcattaaatacatccactaatattaaaaaaacaaaccttaaataaggggcataaaaa 7307493  T
Q  487 atcttttaagcaataactatacttttaaagttgtgacattttattataaata 538  Q
    ||||||||| |||||||||  |||| |||||||||||||||| |||||||||    
T  7307492 atcttttaaacaataactactctttaaaagttgtgacattttcttataaata 7307441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 339 - 534
Target Start/End: Complemental strand, 12506908 - 12506713
Alignment:
Q  339 gaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 438  Q
    |||||||||| |||||||||||||||| ||||||| ||||| || || |||||| ||| | ||||||||||||||| |||||||||||||||||| ||||    
T  12506908 gaaaaaccaaaaaacattaaaaccaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaa 12506809  T
Q  439 tacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattata 534  Q
    ||||  |||| | |||||||| | | ||| | ||| |||| ||||||| |||||| | ||||||||| || || |||||||| | ||||| |||||    
T  12506808 tacacttactgagattaaaaacaaacacattaaataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttcttata 12506713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 386 - 528
Target Start/End: Original strand, 6549064 - 6549206
Alignment:
Q  386 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaa 485  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||   ||||||||| || || | | ||| || || |||    
T  6549064 ttttttgaatatttttactaatataccttaataaaaaattgtgaaacattaaatacatccactatctttaaaaagaaaaccattaagtgaaggataaaaa 6549163  T
Q  486 aatcttttaagcaataactatacttttaaagttgtgacatttt 528  Q
    ||||||||||| ||||||||||| || |||||||||| |||||    
T  6549164 aatcttttaagaaataactataccttaaaagttgtgatatttt 6549206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 324 - 443
Target Start/End: Original strand, 45072448 - 45072570
Alignment:
Q  324 cggtctttattataagaa---aaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaa 420  Q
    ||||||||||||||||||   |||| || |||||| |||||||||||| | || ||||| |  ||||||||||||||||||| |||||||| || |||||    
T  45072448 cggtctttattataagaagaaaaacaaacaaacatcaaaaccaatacactgattaattagtataattttttgaatatttttataaatatactctcataaa 45072547  T
Q  421 aaattgtgaaacattaaatacat 443  Q
    ||| |||||| ||||||||||||    
T  45072548 aaactgtgaagcattaaatacat 45072570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 398 - 511
Target Start/End: Complemental strand, 18145916 - 18145803
Alignment:
Q  398 ttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagc 497  Q
    |||||||||||||||| |||| ||| |||| ||| |||||||||||| ||||||||||||| ||||| || | |||||   ||||||||||||||||| |    
T  18145916 ttttacaaatatacccgtatagaaagttgtaaaatattaaatacatccactaatattaaaatgataatcattaaatgaaaagtagaaaaatcttttaaac 18145817  T
Q  498 aataactatacttt 511  Q
    ||||| || |||||    
T  18145816 aataattacacttt 18145803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 46101120 - 46101201
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttata 418  Q
    |||||||||||| ||| |||||||| ||||||||||| |||| ||| | |||||| ||||||||||||||||||||||||||    
T  46101120 aagaaaaaccaaaaaatattaaaactaatacaatcattaattgttgtagttttttaaatatttttacaaatatacccttata 46101201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 350 - 546
Target Start/End: Complemental strand, 2195996 - 2195798
Alignment:
Q  350 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctacta 449  Q
    |||||| |||||||||  |||||| || |||| ||| ||||| || | |||||||  ||| ||||| || | || || ||||||||||||||||||| ||    
T  2195996 aaacatcaaaaccaatgtaatcattaactattacaactttttaaacacttttacatgtatgcccttgtagagaactgagaaacattaaatacatctatta 2195897  T
Q  450 atattaaaaagataa--acacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 546  Q
    |||||||||| | ||  ||| | ||||| | |||||||| |||||||| ||||||||| || || |||||| ||| ||||| ||||| |||||| ||||    
T  2195896 atattaaaaaaaaaaatacattaaatgaagagtagaaaagtcttttaaacaataactacaccttaaaagttatgatattttcttatatatagaatcaaa 2195798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 380 - 539
Target Start/End: Original strand, 10599739 - 10599898
Alignment:
Q  380 ttgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgagggg 479  Q
    ||||||| ||||||||  ||||||||||||||||| ||||||  |||||||  |||||||| |   |||| ||||||||||||||||| | ||||| ||     
T  10599739 ttgcaatgttttgaatgattttacaaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgaaggt 10599838  T
Q  480 tagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    ||||||| | ||| || |||||| | ||| |  ||||||||||| |||| ||||||||||    
T  10599839 tagaaaagtttttcaaacaataaatgtacctcaaaagttgtgactttttcttataaatag 10599898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 375 - 538
Target Start/End: Complemental strand, 37048744 - 37048576
Alignment:
Q  375 aattattgcaattttttgaatatttttacaaatatac---ccttataaaaaattgtgaaacattaaata--catctactaatattaaaaagataaacact 469  Q
    ||||| || |||||||||||| ||| ||||||||||    ||| ||||||| | ||||| |||||||||  |  ||| || ||||||||||||||||| |    
T  37048744 aattagtgtaattttttgaatgtttatacaaatatatgtacctcataaaaattcgtgaaccattaaatatcccactaatagtattaaaaagataaacatt 37048645  T
Q  470 taatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaata 538  Q
     ||| | |||||||||| |||||||| |||| |||| ||||| |||||||||| ||||| |||||||||    
T  37048644 aaataaagggtagaaaagtcttttaaacaatcactacactttaaaagttgtgatattttcttataaata 37048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 415 - 538
Target Start/End: Original strand, 46101236 - 46101359
Alignment:
Q  415 tataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaa 514  Q
    |||| ||| |||||||| ||||| |||||| ||||||||||||| || || || | |||||||||||||||| |||||| || |||||||| |  || ||    
T  46101236 tatagaaagttgtgaaatattaagtacatccactaatattaaaatgacaatcattaaatgaggggtagaaaagtcttttgagtaataactacaacttaaa 46101335  T
Q  515 agttgtgacattttattataaata 538  Q
    |||| ||||||||| |||||||||    
T  46101336 agttatgacattttcttataaata 46101359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 357 - 546
Target Start/End: Complemental strand, 14568539 - 14568350
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||||||| |||||||| | |||||| ||| |||||||| |||||||||||||||| |  || ||| || ||||  ||| |||| | | |||||| || |    
T  14568539 aaaaccaagacaatcattagttattgtaatattttgaatgtttttacaaatataccgtattataaatttttgaagtattcaatatacccactaattttga 14568440  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 546  Q
    ||||| ||||| | |||||||| ||||||| |||||||| |||||| ||||  || |||||||  || |||| ||||| |||| ||||||    
T  14568439 aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaa 14568350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 357 - 502
Target Start/End: Complemental strand, 34470240 - 34470095
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||| |||||||||||| ||||| |  || ||||||||||||||||||||||||  |   || |||||||||||| ||||||||||   |||||||||||    
T  34470240 aaaatcaatacaatcattaattaattaaactttttgaatatttttacaaatataaacacttacaaaattgtgaaatattaaatacactcactaatattaa 34470141  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataa 502  Q
    ||||| || || | || ||||| || |||| ||||||||| |||||    
T  34470140 aaagagaagcattaaacgagggataaaaaattcttttaagtaataa 34470095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 405 - 534
Target Start/End: Complemental strand, 46341631 - 46341502
Alignment:
Q  405 aatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataact 504  Q
    ||||||||||  |||||| ||||||| ||||||||||| | |||| ||| ||||| | ||||| | ||| || |||||| || |||||||||||||||||    
T  46341631 aatataccctcgtaaaaagttgtgaagcattaaatacacccactattatcaaaaacaaaaacaataaataagtggtagagaagtcttttaagcaataact 46341532  T
Q  505 atacttttaaagttgtgacattttattata 534  Q
    | || || |||||||||| ||||| |||||    
T  46341531 acaccttaaaagttgtgatattttcttata 46341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 467
Target Start/End: Original strand, 14658722 - 14658850
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| |||  | |||||| ||| |||||| | ||||| ||| ||||| ||| |||||||||||||||||| |||||||  | ||||  ||||    
T  14658722 aagaaaaaccaaaaaa--tcaaaacctataaaatcattagttattacaactttttaaatgtttttacaaatataccctcataaaaacatatgaagtatta 14658819  T
Q  437 aatacatctactaatattaaaaagataaaca 467  Q
    ||||  || |||| |||||||||||||||||    
T  14658820 aatatttccactagtattaaaaagataaaca 14658850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 464
Target Start/End: Complemental strand, 18117435 - 18117341
Alignment:
Q  368 aatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataa 464  Q
    |||||| |||||||| || |||||  ||||||| | ||||||||  ||||| |||||||||||| ||||||||||| |||||||||||||| |||||    
T  18117435 aatcattaattattgtaactttttatatatttt-ataaatatacttttatagaaaattgtgaaa-attaaatacatttactaatattaaaatgataa 18117341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 337 - 467
Target Start/End: Complemental strand, 2122552 - 2122421
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaa-ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacatt 435  Q
    |||||||||||| ||||||   |||||||| ||| || ||||| || || ||||||||||||||||||||||| | | |  |||| || ||| || ||||    
T  2122552 aagaaaaaccaaaaaacatcttaaccaatataattattaattaatgtaagttttttgaatatttttacaaatacagcatcgtaaacaaatgttaagcatt 2122453  T
Q  436 aaatacatctactaatattaaaaagataaaca 467  Q
    |||||||   |||||||||||||||| |||||    
T  2122452 aaatacactcactaatattaaaaagacaaaca 2122421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 943315 - 943255
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttata 418  Q
    ||||||||||||||||| |||| ||| |||||||  |||||||||||||| |||||||||||    
T  943315 aaaaccaatacaatcattaattgttgtaattttta-aatatttttacaaacatacccttata 943255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 15028844 - 15028788
Alignment:
Q  403 caaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaa 459  Q
    |||||||||||| || ||||||||||| |||||||||  ||| ||||||||||||||    
T  15028844 caaatataccctcatgaaaaattgtgatacattaaatgtatccactaatattaaaaa 15028788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 440
Target Start/End: Complemental strand, 10409877 - 10409792
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaatttttt--gaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 440  Q
    |||||||| |||||||| | || ||||||||||||  |||| |||||| |||||||||||  |||||| |||||||  ||||||||    
T  10409877 aaaaccaaaacaatcattagttgttgcaattttttttgaatgtttttataaatataccctcttaaaaatttgtgaagtattaaata 10409792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 337 - 411
Target Start/End: Original strand, 20043604 - 20043678
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatac 411  Q
    ||||||| |||| |||  ||||||| || |||||||| |||| ||| || ||||| |||||||||||||||||||    
T  20043604 aagaaaacccaaaaaattttaaaactaagacaatcattaattgttgtaactttttaaatatttttacaaatatac 20043678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 546
Target Start/End: Complemental strand, 42935513 - 42935447
Alignment:
Q  480 tagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 546  Q
    |||||||||||||||| |||||| | ||  |  ||||||||||| |||| |||||||||||||||||    
T  42935513 tagaaaaatcttttaaacaataaatgtatctcaaaagttgtgactttttcttataaatagaaccaaa 42935447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 541
Target Start/End: Original strand, 14650144 - 14650249
Alignment:
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaa-tcttttaagcaataactatacttttaaagttgtgacattttattataa 535  Q
    |||| ||| |||| |||||||| |||||||| | |||||||  || ||||| ||||||| ||||||| || |  || ||| |||||||||||| ||||||    
T  14650144 aatatatccactagtattaaaatgataaacattgaatgaggactaaaaaaagtcttttatgcaataaatacatcttaaaaattgtgacattttcttataa 14650243  T
Q  536 atagaa 541  Q
    ||||||    
T  14650244 atagaa 14650249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 20032519 - 20032576
Alignment:
Q  367 caatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaat 424  Q
    ||||||| |||| ||| || ||||| |||||||||||||||||||  |||||||||||    
T  20032519 caatcattaattgttgtaactttttaaatatttttacaaatatactattataaaaaat 20032576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 337 - 546
Target Start/End: Complemental strand, 3224 - 3015
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| |||||| |||||||||||  |||| |||| ||| |  ||||| || ||||||||||| || |||||||| ||  |||||||||||||    
T  3224 aagaaaaaccaaaaaacatcaaaaccaatactgtcattaattcttgtacctttttaaacatttttacaaacatgcccttatagaatgttgtgaaacatta 3125  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    |||||||| |||||||||||||||| ||  | | |||||||| ||||||| |||||||| ||||||||| || || |||||||||||||||| |||||||    
T  3124 aatacatccactaatattaaaaagagaattattgaatgagggatagaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataaa 3025  T
Q  537 tagaaccaaa 546  Q
    ||| ||||||    
T  3024 taggaccaaa 3015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 337 - 535
Target Start/End: Complemental strand, 18705201 - 18705003
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||||||| ||||||  ||||||||||||  || ||||| || || |||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  18705201 aagaaaaaccaaaaaacatcgaaaccaatacaactattaattagtgtaactttttgaatatttttacaaatatatccttataaaaagttgtgaagcatta 18705102  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 535  Q
    |||||| ||| |||||||||||| | ||||| | ||| | ||||| |||| ||||||||| |||||||| || || |||||| |||  |||| ||||||    
T  18705101 aatacacctattaatattaaaaacaaaaacattaaataaagggtaaaaaagtcttttaagtaataactacaccttaaaagttatgatgttttcttataa 18705003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 387 - 519
Target Start/End: Original strand, 11983578 - 11983709
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 486  Q
    |||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||| ||||    
T  11983578 tttttgaatacttttacaaatatactcttgtaaaa-attgtgaaacattaaatacatccactaatattaaaaagagaaacattaaatgaggggtaaaaaa 11983676  T
Q  487 atcttttaagcaataactatacttttaaagttg 519  Q
    ||||||||| |||||| || || || |||||||    
T  11983677 atcttttaaacaataattacaccttaaaagttg 11983709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 324 - 500
Target Start/End: Complemental strand, 2225798 - 2225619
Alignment:
Q  324 cggtctttattataagaaaaa---ccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaa 420  Q
    ||||||||||||||| |||||   |||| |||||| ||||| |||||||| || ||||| || || ||||  |||||||||||||||||||| | |||||    
T  2225798 cggtctttattataaaaaaaaaaaccaaaaaacatcaaaactaatacaattattaattagtgtaacttttgaaatatttttacaaatataccttcataaa 2225699  T
Q  421 aaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaat 500  Q
    || ||||||||||||||||||| | |||||||||||||| | ||||| | ||| |  ||||||||| |||||||| ||||    
T  2225698 aagttgtgaaacattaaatacaaccactaatattaaaaacaaaaacattaaataaatggtagaaaagtcttttaaacaat 2225619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 340 - 537
Target Start/End: Original strand, 3629158 - 3629355
Alignment:
Q  340 aaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaat 439  Q
    ||||||||| |||||| |||||||||   || || |||| ||| || ||||| || ||||||||||||||| ||||||| ||  ||||||||||||||||    
T  3629158 aaaaaccaaaaaacatcaaaaccaatgttataattaattgttgtaactttttaaacatttttacaaatataaccttatagaatgttgtgaaacattaaat 3629257  T
Q  440 acatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaat 537  Q
    ||||  |||||||||||||| | |  || | ||| |||| || |||| ||||||||| |||||||| || || |||||||||||||||| ||||||||    
T  3629258 acattcactaatattaaaaatacagtcattaaattagggatacaaaagtcttttaagtaataactacaccttaaaagttgtgacattttcttataaat 3629355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 350 - 534
Target Start/End: Complemental strand, 6688978 - 6688792
Alignment:
Q  350 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctacta 449  Q
    |||||||||||||||| ||||||| ||||| || || |||||| ||| | ||||||||||||||| |||||||||||| || |||||||||||  |||||    
T  6688978 aaacattaaaaccaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtaaagcattaaatacacttacta 6688879  T
Q  450 --atattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattata 534  Q
      |||||||||| | | | | | ||| |||| ||||||| |||||||| ||||||||| || || |||||||||| ||||| |||||    
T  6688878 atatattaaaaacaaacatattaaataagggatagaaaagtcttttaaacaataactacaccttaaaagttgtgatattttcttata 6688792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 397 - 534
Target Start/End: Original strand, 19296165 - 19296300
Alignment:
Q  397 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 496  Q
    |||||||| ||||||||| ||||||| |||| ||| |||||| |||||  |||||||||||| || ||||| | ||| | || ||||||| |||||||||    
T  19296165 tttttacatatataccctcataaaaa-ttgtaaaatattaaacacatccgctaatattaaaatgagaaacattaaat-atggatagaaaagtcttttaag 19296262  T
Q  497 caataactatacttttaaagttgtgacattttattata 534  Q
    ||||||||| ||||| |||||||||||||||| |||||    
T  19296263 caataactacactttaaaagttgtgacatttttttata 19296300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 397 - 504
Target Start/End: Complemental strand, 7735896 - 7735789
Alignment:
Q  397 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 496  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||| | ||||| | ||| |  | ||||||| | |||||||    
T  7735896 tttttacaaatatacccttataaaaaattgtcaaacattaaatacacccgctaatattaaaaacaaaaacattaaataattgatagaaaagttttttaag 7735797  T
Q  497 caataact 504  Q
     |||||||    
T  7735796 taataact 7735789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 387 - 545
Target Start/End: Original strand, 11691055 - 11691211
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 486  Q
    |||||||||||||||||||||| | ||| |||||| ||| ||||| ||||||||||   ||||| |||||||||| ||||| | |||||||| |||  ||    
T  11691055 tttttgaatatttttacaaatacatcctcataaaatattatgaaatattaaatacactcactaagattaaaaagagaaacattaaatgagggatag--aa 11691152  T
Q  487 atcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 545  Q
     ||||||||| |||||||| || |  ||| ||| |||||||  |||||||||| |||||    
T  11691153 gtcttttaagaaataactacacctaaaaaattgcgacatttgtttataaataggaccaa 11691211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 538
Target Start/End: Complemental strand, 4449592 - 4449438
Alignment:
Q  384 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacact-taatgaggggtag 482  Q
    ||||||||||||||||||||||||||||||| || | ||||||||  |||||||||||| | | ||| |||||||||| ||||| |  ||||| |||||     
T  4449592 aattttttgaatatttttacaaatataccctcatgagaaattgtg--acattaaatacaaccattaagattaaaaagacaaacattgaaatga-gggtaa 4449496  T
Q  483 aaaaatcttttaagcaataact--atacttttaaagttgtgacattttattataaata 538  Q
    |||| ||||||||| ||||| |  | || || ||| |||||||||||| |||||||||    
T  4449495 aaaagtcttttaagaaataaatacacaccttaaaaattgtgacattttcttataaata 4449438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 539
Target Start/End: Complemental strand, 27193191 - 27193011
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    |||||||||| |||||| ||||| ||  ||||||   ||||||||||||||||| | | |||||||||| |||||||||||| | |   | | |||||||    
T  27193191 aaaaccaatataatcattaattaatgttatttttg--atatttttacaaatatatcatcataaaaaattatgaaacattaaaaatactcagttatattaa 27193094  T
Q  457 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 539  Q
    ||||| |  || | ||||| || || |||| |||||||| |||||||||||  || |||||||||||||||  ||||||||||    
T  27193093 aaagagatgcattaaatgaaggataaaaaagtcttttaaacaataactatatcttaaaagttgtgacatttccttataaatag 27193011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 357 - 467
Target Start/End: Original strand, 29948033 - 29948143
Alignment:
Q  357 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 456  Q
    ||||||||| ||||||| | ||| || || |||||  |||||||||||||||||| || |||||||||| | ||||||||||||||   | |||||||||    
T  29948033 aaaaccaatgcaatcattatttaatgtaacttttttgatatttttacaaatatactctaataaaaaattataaaacattaaatacactcattaatattaa 29948132  T
Q  457 aaagataaaca 467  Q
    ||| |||||||    
T  29948133 aaatataaaca 29948143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 338 - 459
Target Start/End: Complemental strand, 14418059 - 14417936
Alignment:
Q  338 agaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttg--aatatttttacaaatatacccttataaaaaattgtgaaacatt 435  Q
    ||||||| ||| |||||||||||| |||| | |||| ||||| || | ||||||   |||||| |||||||| |||| | ||||||||||||||| ||||    
T  14418059 agaaaaaacaaaaaacattaaaacaaatatactcattaattagtgtattttttttttaatattcttacaaatttaccttcataaaaaattgtgaagcatt 14417960  T
Q  436 aaatacatctactaatattaaaaa 459  Q
    ||||||| | ||||||||| ||||    
T  14417959 aaatacacccactaatatttaaaa 14417936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 330 - 443
Target Start/End: Original strand, 35546991 - 35547104
Alignment:
Q  330 ttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtga 429  Q
    |||||||||||| ||  || |||||| ||||| |||| |||| | |||||||  || ||||| ||||||||||| |||||||| ||||| ||| ||||||    
T  35546991 ttattataagaagaagaaaaaaacatcaaaactaataaaatcgttaattattataactttttaaatatttttacgaatataccattatagaaagttgtga 35547090  T
Q  430 aacattaaatacat 443  Q
    ||| || |||||||    
T  35547091 aacttttaatacat 35547104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 397 - 506
Target Start/End: Original strand, 36482426 - 36482535
Alignment:
Q  397 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 496  Q
    |||||||||||||||| |||    || ||||||||||||||||||||  ||||||| || ||| | ||  | | ||| |||||||||||| |||||||||    
T  36482426 tttttacaaatatacctttaatggaagttgtgaaacattaaatacattcactaataatagaaatacaattattaaataaggggtagaaaagtcttttaag 36482525  T
Q  497 caataactat 506  Q
    ||||||||||    
T  36482526 caataactat 36482535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 405
Target Start/End: Complemental strand, 7736744 - 7736664
Alignment:
Q  325 ggtctttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaa 405  Q
    |||||||||||||| ||||| ||| ||| ||||||| |||||||||||| ||||| || | |||||| |||| ||||||||    
T  7736744 ggtctttattataaaaaaaatcaaaaaatattaaaatcaatacaatcattaattagtgaatttttttaaatacttttacaa 7736664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 429 - 536
Target Start/End: Original strand, 3257247 - 3257354
Alignment:
Q  429 aaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacatttt 528  Q
    |||||||||||| ||| |||||||||||||||| ||||| | ||| || | ||||||| |||||||| |||||  ||  | || |||||||||| |||||    
T  3257247 aaacattaaatatatccactaatattaaaaagacaaacattaaataagagatagaaaagtcttttaaacaatagttacgccttaaaagttgtgatatttt 3257346  T
Q  529 attataaa 536  Q
     |||||||    
T  3257347 cttataaa 3257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 442
Target Start/End: Complemental strand, 14917875 - 14917820
Alignment:
Q  387 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaataca 442  Q
    ||||| || |||||||||||||||||||  ||||||||||||||  ||||||||||    
T  14917875 tttttaaacatttttacaaatataccctcgtaaaaaattgtgaagaattaaataca 14917820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 539
Target Start/End: Complemental strand, 43442145 - 43442043
Alignment:
Q  436 aaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 535  Q
    ||||||| | ||||| |||||||||| || || | ||||| || || ||| ||||||||||||||||||||||  |||||| ||| | ||||| ||||||    
T  43442145 aaatacacccactaagattaaaaagaaaatcattaaatgaaggataaaaatatcttttaagcaataactatac-cttaaagatgtaaaattttcttataa 43442047  T
Q  536 atag 539  Q
    ||||    
T  43442046 atag 43442043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 545
Target Start/End: Complemental strand, 35931646 - 35931539
Alignment:
Q  436 aaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 535  Q
    ||||||||||| |||||||||||  |||| || | ||||| ||| |||||| || |||||  |||||||| |||||  ||||| ||| ||||| ||||||    
T  35931646 aaatacatctattaatattaaaa--ataatcattaaatgaaggggagaaaagtcatttaaaaaataactacactttagaagttatgaaattttcttataa 35931549  T
Q  536 atagaaccaa 545  Q
    |||| |||||    
T  35931548 ataggaccaa 35931539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 337 - 546
Target Start/End: Complemental strand, 154542 - 154333
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    ||||||||| || |||||| |||||||||||| |||| ||||| || || || ||||||||||||||||| || |||| |||||||| |||||| |||||    
T  154542 aagaaaaacaaaaaaacatcaaaaccaatacactcattaattagtgtaacttgttgaatatttttacaaacatgccctcataaaaaactgtgaagcatta 154443  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    |||||| | || ||||||||||||| ||||| | ||| |  |||| |||  |||||||| ||||||||| || || |||||||| | ||||| |||||||    
T  154442 aatacacccaccaatattaaaaagacaaacattaaataaaaggtaaaaaggtcttttaaacaataactacaccttaaaagttgtaatattttcttataaa 154343  T
Q  537 tagaaccaaa 546  Q
    ||||||||||    
T  154342 tagaaccaaa 154333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 337 - 545
Target Start/End: Original strand, 443 - 651
Alignment:
Q  337 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 436  Q
    |||||||| ||| |||||| || |||||||| ||||| |||| ||| || ||||| || ||||||||||||||||||||||| ||  |||||||||||||    
T  443 aagaaaaatcaaaaaacatcaataccaataccatcattaattgttgtaactttttaaagatttttacaaatatacccttatagaatgttgtgaaacatta 542  T
Q  437 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 536  Q
    |||  ||| ||||||||||||| || || || | |||||||| || |||| |||||||| ||||||||| || || || |||||||| |||| ||||||     
T  543 aatggatccactaatattaaaacgacaatcattaaatgagggataaaaaagtcttttaaacaataactacaccttaaatgttgtgactttttcttataat 642  T
Q  537 tagaaccaa 545  Q
    ||| |||||    
T  643 taggaccaa 651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 360 - 538
Target Start/End: Original strand, 38802 - 38979
Alignment:
Q  360 accaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaa 459  Q
    ||||| |||||||| | || |||||||||||||||| ||||||||||||||| || ||||||| ||| |||  |||||| | ||| ||||||||| | ||    
T  38802 accaaaacaatcattagttcttgcaattttttgaatgtttttacaaatatactctcataaaaatttgggaactattaaacatatccactaatattgataa 38901  T
Q  460 gataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaata 538  Q
     |   ||| | ||| |||| ||||||||| |||||| |||||| ||||  || ||| ||||||| |||| |||||||||    
T  38902 -aacgacattcaataagggctagaaaaatattttaaacaataaatatatcttaaaaattgtgactttttcttataaata 38979  T

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