View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5964-Insertion-5 (Length: 701)
Name: NF5964-Insertion-5
Description: NF5964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5964-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 24 - 701
Target Start/End: Complemental strand, 43909549 - 43908873
Alignment:
| Q |
24 |
acaatgataatgaaacatcaatgataacaaccaagtcttatcttactacgtgtgaaattgcagggcgttcttatcacttttatttttatattagggcatt |
123 |
Q |
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| T |
43909549 |
acaatgataatgaaacatcaatgataacaaccaagtcttatcttactacatgtaaaattgcaaggcgttcttatcagtcttatttttatattagggcatt |
43909450 |
T |
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| Q |
124 |
gatagtttgagaggaaagtgatctacgaattgtgaagtaaagaatgtcattgt--gtgtattgtaataatatattgcttataatggcccatattgcatga |
221 |
Q |
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| T |
43909449 |
gatagtttgaaaggaaagtgatctacaaattgtgaagtaaagaatgtcattgtgtgtgtattgtaataatatattgcttataatggcccatattgcatga |
43909350 |
T |
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| Q |
222 |
acttgatcattgaatgttgaagattacacacaaaaaccatgaatgtgtctttttcggttaagtta-ctcccacattacaaacctttgggactaattcact |
320 |
Q |
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| T |
43909349 |
acttggtcattgaatgttgaaaattacacacaaaaaccttgaatgtgtctttttcggttaagttagttcacacattacaaacctttgggactaattcaat |
43909250 |
T |
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| Q |
321 |
cagcaaaatagacattcaaggactaatttgatggctaaatgcatgtttggggatcatgtgtgtgattttcatgacttcatctttccattcatgtactaat |
420 |
Q |
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| T |
43909249 |
-agcaaaatagacattcaaggattaatttgatggctaaatgcatgtttggggatcatgtgtgtgattttcatgatttcatctttccattcatgtactatt |
43909151 |
T |
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| Q |
421 |
atgacagacgtggtatctttcaaagactcgtttgctgttcattttatttattagtgacaaaaattgtagaaaaattaatcaatgagaaaagacacaacta |
520 |
Q |
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| T |
43909150 |
atgactgatgtgctatctttcaatgactcgtttgctgttca-tttatttattagtgacaaaaatcgtagaaaaattaatcagcgagaaaagacacaacta |
43909052 |
T |
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| Q |
521 |
agattgtatcactattatcacaaaaatatatattagattgctgaaaatcctctcannnnnnnnattagccaacagttgcggccatagaagctggaaaaga |
620 |
Q |
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| T |
43909051 |
tgattgtatcactattatcac-aaaatatatattagattgctgaaaatcctctca-tttttttattagccaacagttgcggccatagaagctggaaaaga |
43908954 |
T |
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| Q |
621 |
catagctttggccaataaagagacactaattgccggaggtccttttgtccttcctcttgcccggaagcataatgtaaaaat |
701 |
Q |
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| T |
43908953 |
catagctttggccaataaagagacactaattgccggaggtccttttgtccttcctcttgcccggaagcataatgtaaaaat |
43908873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 680
Target Start/End: Original strand, 3633540 - 3633633
Alignment:
| Q |
587 |
agccaacagttgcggccatagaagctggaaaagacatagctttggccaataaagagacactaattgccggaggtccttttgtccttcctcttgc |
680 |
Q |
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| T |
3633540 |
agccaacagtggcggcgattgaagcagggaaagacatagcattagctaacaaagagacaatgattgctggaggcgcttttgttcttcctcttgc |
3633633 |
T |
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