View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5964-Insertion-8 (Length: 295)
Name: NF5964-Insertion-8
Description: NF5964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5964-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 87 - 293
Target Start/End: Original strand, 51248573 - 51248774
Alignment:
| Q |
87 |
acttaattttaggtatttccatgtctaaagcattaagcagtgtgcgatattttcctaacaaaaggtaacaaaagaaaagctcccaacaaaagcaactcca |
186 |
Q |
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| T |
51248573 |
acttgattttaggtctttccatgtctaaagcattaagcagtgtgcgatattttcctaacaaaaggtaacaaaagaaaagctcccaacaaaagcaactcca |
51248672 |
T |
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| Q |
187 |
atagttaacatgtgctnnnnnnngccgttgtattgcagtgcagtaattacccctttaatcacgtccaacaaatgtgctcataaaatacacttctgccgta |
286 |
Q |
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| T |
51248673 |
atagttaacatgtgctaaaaaaagccgttgtat-----ggcagtagttacccctttaatcacgtccaacaaatgtgctcataaaatacacttctaccgta |
51248767 |
T |
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| Q |
287 |
tttccta |
293 |
Q |
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||||||| |
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| T |
51248768 |
tttccta |
51248774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 51247782 - 51247853
Alignment:
| Q |
9 |
gtgtgagctaaaactctcttcaaagcaaagaaaacaaataaagagtaatatcgagaaattaaatactcacttaa |
82 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
51247782 |
gtgtgagctaaaactctcttcaaagcaaagaaaacaaataa--agtaatattgagaaattaaatactcacttaa |
51247853 |
T |
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