View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5964_low_2 (Length: 353)
Name: NF5964_low_2
Description: NF5964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5964_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 32220246 - 32220102
Alignment:
| Q |
18 |
ttcattaccctttatccacattgttcaaaatctaatgttggaataacatannnnnnnggaaagaaagaattggtccatgtattttaatttactcatagat |
117 |
Q |
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| T |
32220246 |
ttcattatcctttacccacattgttcaaaatctaatgtttgaataacatatttttttggaaagaaagaattggtccatgtattttaatttactcatagat |
32220147 |
T |
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| Q |
118 |
ggcgaccatccattttcatggtagtgcatcttatgttcaacagaa |
162 |
Q |
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| T |
32220146 |
ggcgaccatccattttcatggtagtgcatcttatgttcaacagaa |
32220102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 262 - 347
Target Start/End: Complemental strand, 32219966 - 32219881
Alignment:
| Q |
262 |
caccaccaccaccattacactctctctccccctctgcaaatctccggccaccggagaccgtcgtctaccaccatcgttcatctctc |
347 |
Q |
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| T |
32219966 |
caccaccaccaccattacactctttctccccctctttaaatctccagccactggagaccgtcgtctaccaccatcgttcttctctc |
32219881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 32220077 - 32220045
Alignment:
| Q |
155 |
caacagaatatagacatcgtatgcctatacgta |
187 |
Q |
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| T |
32220077 |
caacacaatatagacatcgtatgcctatacgta |
32220045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 12408807 - 12408770
Alignment:
| Q |
278 |
acactctctctccccctctgcaaatctccggccaccgg |
315 |
Q |
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| T |
12408807 |
acacactctctccccctctccaaatctccggccaccgg |
12408770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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