View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5965-Insertion-1 (Length: 1030)

Name: NF5965-Insertion-1
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5965-Insertion-1
NF5965-Insertion-1
[»] chr3 (13 HSPs)
chr3 (298-626)||(3708147-3708475)
chr3 (714-872)||(3705336-3705494)
chr3 (716-870)||(3712892-3713042)
chr3 (715-870)||(3701595-3701743)
chr3 (714-845)||(3719434-3719563)
chr3 (713-795)||(3707922-3708004)
chr3 (714-788)||(26807448-26807522)
chr3 (714-788)||(32775270-32775344)
chr3 (714-788)||(32814956-32815030)
chr3 (26-116)||(3717477-3717567)
chr3 (381-446)||(3702295-3702360)
chr3 (715-788)||(32772691-32772764)
chr3 (726-779)||(41845773-41845826)
[»] chr8 (8 HSPs)
chr8 (715-800)||(12483098-12483183)
chr8 (714-787)||(12289395-12289468)
chr8 (715-788)||(12670511-12670584)
chr8 (716-788)||(939435-939507)
chr8 (716-788)||(2105864-2105936)
chr8 (715-795)||(12482778-12482858)
chr8 (715-788)||(11949429-11949502)
chr8 (713-753)||(11949183-11949223)
[»] chr7 (2 HSPs)
chr7 (713-788)||(25796172-25796247)
chr7 (726-779)||(45343081-45343134)
[»] chr4 (4 HSPs)
chr4 (713-788)||(19185991-19186066)
chr4 (716-788)||(26741372-26741444)
chr4 (716-787)||(30161835-30161906)
chr4 (716-787)||(51386264-51386335)
[»] chr1 (5 HSPs)
chr1 (714-788)||(43849046-43849120)
chr1 (716-793)||(27981044-27981121)
chr1 (715-787)||(30953117-30953189)
chr1 (726-779)||(39755137-39755190)
chr1 (726-779)||(39760491-39760544)
[»] chr5 (4 HSPs)
chr5 (715-788)||(31965398-31965471)
chr5 (716-788)||(8219734-8219806)
chr5 (716-788)||(38322601-38322673)
chr5 (716-788)||(38327773-38327845)
[»] chr6 (3 HSPs)
chr6 (716-788)||(21882907-21882979)
chr6 (380-564)||(3520334-3520518)
chr6 (564-623)||(3520537-3520598)
[»] chr2 (4 HSPs)
chr2 (716-788)||(4767493-4767565)
chr2 (716-788)||(38551328-38551400)
chr2 (726-779)||(14428572-14428625)
chr2 (726-779)||(34962092-34962145)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 298 - 626
Target Start/End: Complemental strand, 3708475 - 3708147
Alignment:
Q  298 gcaaggttgtggtgagtccatcgagataaaggcatcctcttcaaccggctcttcttgcaaataacttgtgacaccagtacatgaagaatattgtcaccat 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  3708475 gcaaggttgtggtgagtccatcgagataaaggcatcctcttcaaccggctcttcttgcaaataacttgtgacaccagtacacgaagaattttgtcaccat 3708376  T
Q  398 tgtacttcgaaaggctattgaaaatcacccttcaaatgttgagattcagttccatccccactgcatcgctagcaactagaacgtcgtatttgttactttg 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  3708375 tgtacttcgaaaggctattgaaaatcacccttcaaatgttgagattcagttccatccccactgcatcactagcaactag-atgtcgtatttgttactttg 3708277  T
Q  498 attgtttgaacaaattagc-tgctgcctaaaagtttctgttgccaatgctccgtgtatgacataacatcgatggctaaattaacctcaaatatctctcct 596  Q
    ||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3708276 attgtttgaacaaatcagcttgctgcctaaaagtttctgttggcaatgctccgtgtatgacataacatcgatggctaaattaacctcaaatatctctcct 3708177  T
Q  597 tgagaatgcaacaacacaattcccagaccg 626  Q
    |||||| |||||||||||||||||||||||    
T  3708176 tgagaacgcaacaacacaattcccagaccg 3708147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 714 - 872
Target Start/End: Complemental strand, 3705494 - 3705336
Alignment:
Q  714 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgttcaattgatgataatgtta 813  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  3705494 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttattcaattgatgataatgtta 3705395  T
Q  814 ttagatatttattatctacagactacaatgattgataatatgacagaggaaacttctaa 872  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3705394 ttacatatttattatctacagactacaatgattgataatatgacagaggaaacttctaa 3705336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 716 - 870
Target Start/End: Complemental strand, 3713042 - 3712892
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgttcaattgatgataatgttatt 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  3713042 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgttcatttgatgataatgttatt 3712943  T
Q  816 agatatttattatctacagactacaatgattgataatatgacagaggaaacttct 870  Q
    |||||||||  ||||| |||||||||    ||||||||||||| |||||||||||    
T  3712942 agatatttaacatctatagactacaa----tgataatatgacaaaggaaacttct 3712892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 715 - 870
Target Start/End: Complemental strand, 3701743 - 3701595
Alignment:
Q  715 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgttcaattgatgataatgttat 814  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||   | | |||||| |    
T  3701743 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgttctat---tcaaaatgttgt 3701647  T
Q  815 tagatatttattatctacagactacaatgattgataatatgacagaggaaacttct 870  Q
    ||||||||||  ||||| | |||| ||    ||||||||||||| |||||||||||    
T  3701646 tagatatttaacatctagatactataa----tgataatatgacaaaggaaacttct 3701595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 714 - 845
Target Start/End: Complemental strand, 3719563 - 3719434
Alignment:
Q  714 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgttcaattgatgataatgtta 813  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||  ||| ||| |||    
T  3719563 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgtacattt--tgacaatatta 3719466  T
Q  814 ttagatatttattatctacagactacaatgat 845  Q
    |||||| ||||  ||||| || ||||||||||    
T  3719465 ttagatctttaacatctagagcctacaatgat 3719434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 713 - 795
Target Start/End: Complemental strand, 3708004 - 3707922
Alignment:
Q  713 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgtt 795  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3708004 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgtt 3707922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 714 - 788
Target Start/End: Original strand, 26807448 - 26807522
Alignment:
Q  714 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26807448 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 26807522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 714 - 788
Target Start/End: Complemental strand, 32775344 - 32775270
Alignment:
Q  714 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32775344 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 32775270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 714 - 788
Target Start/End: Complemental strand, 32815030 - 32814956
Alignment:
Q  714 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32815030 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 32814956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 3717567 - 3717477
Alignment:
Q  26 tattacattggttagttaaatgaaattctgattttgatctccttgatttgctagttccgtttgcattccttagagagattgaccaagtaag 116  Q
    ||||||||||| | ||||||||||||||||||||| ||||| || ||||||| |||| | |||||| ||||||| ||||| ||||||||||    
T  3717567 tattacattggcttgttaaatgaaattctgattttcatctctttaatttgcttgttcagcttgcatcccttagacagattaaccaagtaag 3717477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 3702360 - 3702295
Alignment:
Q  381 aagaatattgtcaccattgtacttcgaaaggctattgaaaatcacccttcaaatgttgagattcag 446  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||    
T  3702360 aagaattttgccaccattgtacttcgaaaggctactgaaaatcaccctttgaatgttgaggttcag 3702295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 715 - 788
Target Start/End: Complemental strand, 32772764 - 32772691
Alignment:
Q  715 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    ||||| ||||| |||||| |||||  ||||||||||||||||||||||||||||||| || |||||| ||||||    
T  32772764 ttgcagcagccaggaatcaaacccaagtctgtaccgtggcagggtactattctaccattaaaccacttgtgctt 32772691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 779
Target Start/End: Original strand, 41845773 - 41845826
Alignment:
Q  726 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 779  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  41845773 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 41845826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 8e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 715 - 800
Target Start/End: Original strand, 12483098 - 12483183
Alignment:
Q  715 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgttcaatt 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  12483098 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttggtcaatt 12483183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 714 - 787
Target Start/End: Complemental strand, 12289468 - 12289395
Alignment:
Q  714 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 787  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12289468 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 12289395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 715 - 788
Target Start/End: Original strand, 12670511 - 12670584
Alignment:
Q  715 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12670511 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 12670584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 716 - 788
Target Start/End: Original strand, 939435 - 939507
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  939435 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 939507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 716 - 788
Target Start/End: Complemental strand, 2105936 - 2105864
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2105936 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 2105864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 715 - 795
Target Start/End: Original strand, 12482778 - 12482858
Alignment:
Q  715 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgtt 795  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  12482778 ttgcaccagccaggaattgaacccgggtctgtaccatggcagggtactattctaccactagaccactggtgctttgttgtt 12482858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 715 - 788
Target Start/End: Original strand, 11949429 - 11949502
Alignment:
Q  715 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11949429 ttgcaccagccaggaattgaacccgggtctgtagcgtggcagggtactattctaccactagaccactggtgctt 11949502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 713 - 753
Target Start/End: Original strand, 11949183 - 11949223
Alignment:
Q  713 tattgcaccagccgggaatcgaacccgggtctgtaccgtgg 753  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  11949183 tattgcaccagccgggaattgaacccgggtctgaaccgtgg 11949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 713 - 788
Target Start/End: Complemental strand, 25796247 - 25796172
Alignment:
Q  713 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25796247 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 25796172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 779
Target Start/End: Original strand, 45343081 - 45343134
Alignment:
Q  726 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 779  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  45343081 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 45343134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 713 - 788
Target Start/End: Complemental strand, 19186066 - 19185991
Alignment:
Q  713 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19186066 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 19185991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 716 - 788
Target Start/End: Original strand, 26741372 - 26741444
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26741372 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 26741444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 716 - 787
Target Start/End: Complemental strand, 30161906 - 30161835
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 787  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161906 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30161835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 716 - 787
Target Start/End: Original strand, 51386264 - 51386335
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 787  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386264 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 51386335  T

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Target: chr1 (Bit Score: 75; Significance: 5e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 714 - 788
Target Start/End: Original strand, 43849046 - 43849120
Alignment:
Q  714 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43849046 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 43849120  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 716 - 793
Target Start/End: Complemental strand, 27981121 - 27981044
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttg 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27981121 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttg 27981044  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 715 - 787
Target Start/End: Original strand, 30953117 - 30953189
Alignment:
Q  715 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 787  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30953117 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30953189  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 779
Target Start/End: Complemental strand, 39755190 - 39755137
Alignment:
Q  726 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 779  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39755190 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39755137  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 779
Target Start/End: Complemental strand, 39760544 - 39760491
Alignment:
Q  726 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 779  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39760544 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39760491  T

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Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 715 - 788
Target Start/End: Original strand, 31965398 - 31965471
Alignment:
Q  715 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965398 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 31965471  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 716 - 788
Target Start/End: Complemental strand, 8219806 - 8219734
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8219806 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 8219734  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 716 - 788
Target Start/End: Complemental strand, 38322673 - 38322601
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322673 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38322601  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 716 - 788
Target Start/End: Complemental strand, 38327845 - 38327773
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327845 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38327773  T

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Target: chr6 (Bit Score: 73; Significance: 8e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 716 - 788
Target Start/End: Complemental strand, 21882979 - 21882907
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21882979 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 21882907  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 380 - 564
Target Start/End: Original strand, 3520334 - 3520518
Alignment:
Q  380 gaagaatattgtcaccattgtacttcgaaaggctattgaaaatcacccttcaaatgttgagattcagttccatccccactgcatcgctagcaactagaac 479  Q
    ||||||| |||||||| |||||||| |||||| |||| ||||||||||||| |||||| || || ||  |||||||||||||||| ||||| ||||||||    
T  3520334 gaagaattttgtcaccgttgtactttgaaaggttattaaaaatcacccttcgaatgttaaggttaaggcccatccccactgcatcactagctactagaac 3520433  T
Q  480 gtcgtatttgttactttgattgtttgaacaaattagc-tgctgcctaaaagtttctgttgccaatgctccgtgtatgacataacat 564  Q
    ||| ||||  |||||||||| | |||||||||||||| |||||||||  ||| |||| || ||| ||||||| ||| ||| |||||    
T  3520434 gtcatattcattactttgatcg-ttgaacaaattagcttgctgcctacgagtctctggtggcaaagctccgtatatcacacaacat 3520518  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 623
Target Start/End: Original strand, 3520537 - 3520598
Alignment:
Q  564 tcgatggctaaattaacctcaaata--tctctccttgagaatgcaacaacacaattcccaga 623  Q
    ||||| ||||| |||||||||||||  |||||||||||||| ||||||||||| | ||||||    
T  3520537 tcgatagctaatttaacctcaaatatctctctccttgagaaggcaacaacacagtccccaga 3520598  T

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Target: chr2 (Bit Score: 73; Significance: 8e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 716 - 788
Target Start/End: Original strand, 4767493 - 4767565
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4767493 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 4767565  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 716 - 788
Target Start/End: Complemental strand, 38551400 - 38551328
Alignment:
Q  716 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551400 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38551328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 779
Target Start/End: Complemental strand, 14428625 - 14428572
Alignment:
Q  726 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 779  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  14428625 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 14428572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 779
Target Start/End: Complemental strand, 34962145 - 34962092
Alignment:
Q  726 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 779  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  34962145 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 34962092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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