View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5965-Insertion-10 (Length: 370)

Name: NF5965-Insertion-10
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5965-Insertion-10
NF5965-Insertion-10
[»] chr2 (1 HSPs)
chr2 (9-370)||(45152912-45153273)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 45153273 - 45152912
Alignment:
Q  9 aaatcttaagtgcatttactcctttttgtttgacaatataaagcacacaaagtagaacataccacatgagtgaaacgaagaaatggattcaaacaaagta 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45153273 aaatcttaaatgcatttactcctttttgtttgacaatataaagcacacaaagtagaacataccacatgagtgaaacgaagaaatggattcaaacaaagta 45153174  T
Q  109 ctaatagctctactaacccttgttttgctctttcattactctcttactgaaagtacaacactttctcataaccatcatagacacctaaacaaagaagaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45153173 ctaatagctctactaacccttgttttgctctttcattactctcttactgaaagtacaacactttctcataaccatcatagacacctaaacaaagaagaaa 45153074  T
Q  209 aacaagaacaaggacaagaattgagtgtacaaagaagaggaagtggggcaagaagaagcttaaggtgtgacccattttacctatatctatatggatattg 308  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45153073 aacaagaacaagaacaagaattgagtgtacaaagaagaggaagtggggtaagaagaagcttaaggtgtgacccattttacctatatctatatggatattg 45152974  T
Q  309 tggacagtggccttttcctacttaccgttcaccaaacaatccatttgatcaaacaccacccc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45152973 tggacagtggccttttcctacttaccgttcaccaaacaatccatttgatcaaacaccacccc 45152912  T

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