View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5965-Insertion-15 (Length: 69)

Name: NF5965-Insertion-15
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5965-Insertion-15
NF5965-Insertion-15
[»] chr4 (7 HSPs)
chr4 (9-69)||(26121320-26121380)
chr4 (9-69)||(26111793-26111853)
chr4 (9-69)||(26085456-26085516)
chr4 (9-69)||(26056219-26056279)
chr4 (9-69)||(26067881-26067941)
chr4 (13-69)||(26128747-26128803)
chr4 (21-66)||(26038317-26038362)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 6e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-27
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 26121380 - 26121320
Alignment:
Q  9 accactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgact 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26121380 accactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgact 26121320  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 26111853 - 26111793
Alignment:
Q  9 accactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgact 69  Q
    |||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||    
T  26111853 accactgtaatcattggagttcttattggatgcatcatagttttcttttttcctaatgact 26111793  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 26085516 - 26085456
Alignment:
Q  9 accactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgact 69  Q
    ||||||||||||||||||||||||  |||||||||| || |||||||||||||||||||||    
T  26085516 accactgtaatcattggagttcttgctggatgcatcatagttttctattttcctaatgact 26085456  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 26056279 - 26056219
Alignment:
Q  9 accactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgact 69  Q
    ||||||||||||||||||||||||| |||||||||| || |||||| ||||||||| ||||    
T  26056279 accactgtaatcattggagttcttactggatgcatcatagttttcttttttcctaaagact 26056219  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 26067941 - 26067881
Alignment:
Q  9 accactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgact 69  Q
    ||||||||||||||||||||||||| |||||||||| || |||||| ||||||||| ||||    
T  26067941 accactgtaatcattggagttcttactggatgcatcatagttttcttttttcctaaagact 26067881  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 26128803 - 26128747
Alignment:
Q  13 ctgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgact 69  Q
    |||||||||| | |||||||| |||||||||| || |||||| ||||||||||||||    
T  26128803 ctgtaatcatagtagttcttactggatgcatcatagttttcttttttcctaatgact 26128747  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 26038362 - 26038317
Alignment:
Q  21 attggagttcttattggatgcatcttacttttctattttcctaatg 66  Q
    ||||| |||||||||||||||||||||  ||||| |||||||||||    
T  26038362 attggtgttcttattggatgcatcttagctttcttttttcctaatg 26038317  T

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