View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965-Insertion-3 (Length: 820)
Name: NF5965-Insertion-3
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 8 - 552
Target Start/End: Complemental strand, 28673381 - 28672837
Alignment:
| Q |
8 |
atatttgatttgatgcaaaatacaaacatcataagagggaatgatttttccacactttcacatttctnnnnnnnctacacctgatttcataagtgaactt |
107 |
Q |
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| T |
28673381 |
atatttgatttgatgcaaaataccaacatcataagagggaatgatttttccacactttcacatttctaaaaaaactacacctgatatcataagtgaactt |
28673282 |
T |
|
| Q |
108 |
tcacatgatataatttatctggttatcatttctcttagtgcataatgtctaaaattgtatcaaagatcgtatacatcgtacatgtcatataaaaattgaa |
207 |
Q |
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| T |
28673281 |
tcacatgatataatttatctggttatcatttctcttagtgcataatgtctaaaatcgtatcaaagatcgtatacatcgtacatgtcatataaaaattgaa |
28673182 |
T |
|
| Q |
208 |
tattgactatgatcggtttcacnnnnnnnctttctacagattgtgagtaatgataagttcacaagtgttcaacacagagttttagcaaaacatgttggcc |
307 |
Q |
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| T |
28673181 |
tattgactatgatcggtttcactttttttctttctacagattgtgagtaatgataagttcacaagtgttcaacacagagttttagcaaaacatgctggcc |
28673082 |
T |
|
| Q |
308 |
caagaatttcaatcgcatccctttttagagcacatgaaaccgagggaatgccaaaaatgattggtcaaatcaaggaactgttatctaaagaaaatctacc |
407 |
Q |
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| T |
28673081 |
caagaatttcaatcgcatccctttttagagcacatgaatccgagggaatgccaaaagtgattggtccaatcaaggaactgttatctaaagaaaatctacc |
28672982 |
T |
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| Q |
408 |
aatatatagagagacttctttgaaagagttcttggcacatcgttttacaaacggcattggattttctgcactttcaaccaacaggttgtgagttatgaac |
507 |
Q |
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| T |
28672981 |
aatatatagagacacttctttgaaagagttcttggcacatcgttttacaaacggcattggattttctgcactttcaaccaacaggttgtgagttatgaac |
28672882 |
T |
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| Q |
508 |
aaattgcatgcaatcttggatgtttgtttattcacaatcttggat |
552 |
Q |
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| T |
28672881 |
aaattgcatgcaatcttggatgtttgtttattcacaatcttggat |
28672837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 595 - 820
Target Start/End: Complemental strand, 28672769 - 28672551
Alignment:
| Q |
595 |
tcttccataattgacaaccatggtctcggtctcatgggtgctggtcaattttccgtaaaggtttatgcattagacactatcatgggcgaggttggattac |
694 |
Q |
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| T |
28672769 |
tcttccataattgacaaccatggtctcggtctcatgggtgctggtcaattttccgtaaaggtttatgcattagacactatcatgggcgaggttggattac |
28672670 |
T |
|
| Q |
695 |
aaggtcgaatctggtgggcatcctgggccgcacgggtgatgctcatttaccgttgctcgcagagcccgccgagaaggattattggtatatggtggtaact |
794 |
Q |
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| T |
28672669 |
agggtcgaatctggtgggcatcctgggccgcacgggtggtgctcatttaccattgctcgcagagccggctgagaaggattattggtatatggtagta--- |
28672573 |
T |
|
| Q |
795 |
gtcctagtgtcttgatgacattttct |
820 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
28672572 |
----tagtgtcttgatgacattttct |
28672551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 237 - 479
Target Start/End: Complemental strand, 28670088 - 28669837
Alignment:
| Q |
237 |
ctttctacagattgtgagtaatgataagttcacaagtgttcaacacagagttttagcaaaacatgttggcccaagaatttcaatcgcatccctttttaga |
336 |
Q |
| |
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|||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||| || |||||||| |
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| T |
28670088 |
ctttctccagcttgtgagtaatgacaagttcacaagtgttcaacacagagttttagcaaaccatgcaggcccaagaatttcagttgcaaccttttttaga |
28669989 |
T |
|
| Q |
337 |
gc---acatga------aaccgagggaatgccaaaaatgattggtcaaatcaaggaactgttatctaaagaaaatctaccaatatatagagagacttctt |
427 |
Q |
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| |||||| | ||||| ||| |||| |||| || | ||| |||||| |||||||||||||||||| ||||||||| ||||| ||||||| |
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| T |
28669988 |
acacaacatgattactcacatgagggtatggaaaaagtgataggaccaataaaggaattgttatctaaagaaaatccaccaatatacagagatacttctt |
28669889 |
T |
|
| Q |
428 |
tgaaagagttcttggcacatcgttttacaaacggcattggattttctgcact |
479 |
Q |
| |
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||||||||| |||||| |||||||| |||| ||| ||||| ||||||||| |
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| T |
28669888 |
tgaaagagtatttggcatatcgttttgcaaatggccttggagcttctgcact |
28669837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 237 - 524
Target Start/End: Complemental strand, 28639241 - 28638945
Alignment:
| Q |
237 |
ctttctacagattgtgagtaatgataagttcacaagtgttcaacacagagttttagcaaaacatgttggcccaagaatttcaatcgcatccctttttaga |
336 |
Q |
| |
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|||||| ||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||||| || |||||||||||| | ||| |||| |||||| |
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| T |
28639241 |
ctttctgcagcttgtgagtaatgacaagtttaaaagtgttcaacacagagttttagcaaaacatgcaggtccaagaatttcagttgcaaccctctttaga |
28639142 |
T |
|
| Q |
337 |
gc---acatga------aaccgagggaatgccaaaaatgattggtcaaatcaaggaactgttatctaaagaaaatctaccaatatatagagagacttctt |
427 |
Q |
| |
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| |||||| | ||||| || |||||| ||||||| | |||||||||||| |||||| ||||||| | ||||||||| | ||| ||||||| |
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| T |
28639141 |
acacaacatgatcactctcctgagggcataccaaaattgattggaccaatcaaggaacttttatctgaagaaaacccaccaatatacaaagacacttctt |
28639042 |
T |
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| Q |
428 |
tgaaagagttcttggcacatcgttttacaaacggcattggattttctgcactttcaaccaacaggttgtgagttatgaacaaattgcatgcaatctt |
524 |
Q |
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| T |
28639041 |
tgaaagagtacttgaaatatcgtttggcaagcggttttggagcttctgcactatcccctttcaagttgtgacttatgaacaaattgcatgcaatctt |
28638945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 237 - 524
Target Start/End: Complemental strand, 28647983 - 28647691
Alignment:
| Q |
237 |
ctttctacagattgtgagtaatgataagttcacaagtgttcaacacagagttttagcaaaacatgttggcccaagaatttcaatcgcatccctttttaga |
336 |
Q |
| |
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|||| ||||| ||||||||||||| |||| || ||||||||||||||||||||||||||| |||| ||||||||||||||| | ||| || |||||||| |
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| T |
28647983 |
ctttttacagcttgtgagtaatgacaagtacagaagtgttcaacacagagttttagcaaaccatgcaggcccaagaatttcagttgcaaccttttttaga |
28647884 |
T |
|
| Q |
337 |
gc---acatga------aaccgagggaatgccaaaaatgattggtcaaatcaaggaactgttatctaaagaaaatctaccaatatatagagagacttctt |
427 |
Q |
| |
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| |||||| | ||||| || |||||| ||||||| | |||||||||||| |||||||||||||| | |||||||| | ||| || |||| |
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| T |
28647883 |
acacaacatgatcattctcctgagggcataccaaaagtgattggaccaatcaaggaacttttatctaaagaaaaccctccaatatacaaagatacatctt |
28647784 |
T |
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| Q |
428 |
tgaaagagttcttggcacatcgttttacaaacggcattggattttctgcactttcaaccaacaggttgtgagttatgaacaaattgcatgcaatctt |
524 |
Q |
| |
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||||||||| |||| | ||||||| ||| ||| ||||| ||||||||| ||| | || ||| |||||||||||||||||||||||||| |
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| T |
28647783 |
tgaaagagtacttgaaatatcgtttggcaagcgggtttggagcttctgcactatcacctttcaagtt----gttatgaacaaattgcatgcaatctt |
28647691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 542 - 589
Target Start/End: Complemental strand, 28672871 - 28672824
Alignment:
| Q |
542 |
caatcttggatgtttgtttattcacaatcttggattttagcttgcaac |
589 |
Q |
| |
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| T |
28672871 |
caatcttggatgtttgtttattcacaatcttggattttagcttgcaac |
28672824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 28690142 - 28690079
Alignment:
| Q |
255 |
taatgataagttcacaagtgttcaacacagagttttagcaaaacatgttggcccaagaatttca |
318 |
Q |
| |
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|||||| ||||||| || ||||||||||||||||||||||| ||| | || |||||||||||| |
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| T |
28690142 |
taatgacaagttcattagcgttcaacacagagttttagcaaagcatataggtccaagaatttca |
28690079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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