View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5965-Insertion-6 (Length: 545)

Name: NF5965-Insertion-6
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5965-Insertion-6
NF5965-Insertion-6
[»] chr3 (7 HSPs)
chr3 (154-527)||(53092210-53092586)
chr3 (9-127)||(53094363-53094481)
chr3 (249-324)||(50170503-50170578)
chr3 (260-330)||(16277599-16277669)
chr3 (239-313)||(48953928-48954002)
chr3 (236-314)||(50129092-50129171)
chr3 (236-322)||(5050591-5050677)
[»] chr1 (10 HSPs)
chr1 (235-332)||(37209836-37209933)
chr1 (239-336)||(37633657-37633754)
chr1 (238-327)||(38081608-38081697)
chr1 (257-336)||(41898698-41898776)
chr1 (239-337)||(9424548-9424645)
chr1 (261-314)||(26758520-26758573)
chr1 (239-304)||(30533241-30533306)
chr1 (239-324)||(36567364-36567449)
chr1 (239-325)||(43457929-43458015)
chr1 (260-313)||(41024831-41024884)
[»] chr5 (7 HSPs)
chr5 (239-332)||(40112966-40113059)
chr5 (246-371)||(15595009-15595129)
chr5 (237-314)||(19521468-19521545)
chr5 (236-332)||(38869910-38870005)
chr5 (262-325)||(28041533-28041596)
chr5 (246-300)||(33741650-33741704)
chr5 (246-323)||(10647905-10647981)
[»] chr7 (10 HSPs)
chr7 (251-356)||(3399384-3399485)
chr7 (251-327)||(46923639-46923715)
chr7 (257-332)||(31765396-31765471)
chr7 (240-324)||(6181618-6181701)
chr7 (239-307)||(8240728-8240796)
chr7 (247-332)||(23845573-23845656)
chr7 (236-313)||(46276953-46277030)
chr7 (236-297)||(41652022-41652083)
chr7 (251-330)||(2456744-2456826)
chr7 (240-332)||(6248430-6248520)
[»] chr4 (9 HSPs)
chr4 (239-330)||(13435386-13435477)
chr4 (260-369)||(25064122-25064228)
chr4 (239-324)||(51164546-51164631)
chr4 (239-327)||(30617584-30617672)
chr4 (236-323)||(27382005-27382092)
chr4 (239-313)||(52355875-52355949)
chr4 (237-294)||(21190954-21191011)
chr4 (239-323)||(22318149-22318233)
chr4 (237-294)||(27247213-27247270)
[»] chr6 (6 HSPs)
chr6 (257-324)||(1875116-1875183)
chr6 (251-332)||(26653334-26653415)
chr6 (251-332)||(26759302-26759383)
chr6 (257-324)||(13397134-13397201)
chr6 (239-324)||(28637573-28637658)
chr6 (239-321)||(28053473-28053555)
[»] chr2 (10 HSPs)
chr2 (251-327)||(2764112-2764188)
chr2 (239-321)||(11563476-11563558)
chr2 (260-330)||(15080132-15080202)
chr2 (236-322)||(37980361-37980447)
chr2 (262-324)||(44768859-44768921)
chr2 (281-325)||(2985248-2985292)
chr2 (239-283)||(38606873-38606917)
chr2 (251-330)||(34070795-34070874)
chr2 (239-314)||(37624996-37625071)
chr2 (239-313)||(37028930-37029004)
[»] chr8 (3 HSPs)
chr8 (239-332)||(8059944-8060037)
chr8 (239-323)||(18184409-18184493)
chr8 (296-332)||(45336906-45336942)
[»] scaffold0655 (1 HSPs)
scaffold0655 (236-314)||(1705-1784)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 154 - 527
Target Start/End: Complemental strand, 53092586 - 53092210
Alignment:
Q  154 gttacaatttatgaaactatttatgcaaaaagaataatgggaaaaactaagctg---actgaaaggcannnnnnnagatgtcatgctaaaaatggaatta 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||       |  ||||||||||||||||||||||    
T  53092586 gttacaatttatgaaactatttatgcaaaaagaataatgggaaaaactaagctgctgactgaaaggcatttttttaattgtcatgctaaaaatggaatta 53092487  T
Q  251 aaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttacaattaattaatttcttaac 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53092486 aaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttacaattaattaatttcttaac 53092387  T
Q  351 ttatgtatcaagggtacaaattagttttttcccttctttaaataaattgtgatgcgttaaacatggatactctgcttagcttgtgaatatgctatcaata 450  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  53092386 ttatgtctcaagggtacaaattagttttttcccttctttaaataaattgtgatgcgttaaacatggatactctgcttagcttttaaatatgctatcaata 53092287  T
Q  451 tcattctcatatggaactaatcacgcaaggcattaatctaatggagtttagatacgccacaaaaatttcattagcaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53092286 tcattctcatatggaactaatcacgcaaggcattaatctaatggagtttagatacgccacaaaaatttcattagcaa 53092210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 53094481 - 53094363
Alignment:
Q  9 cagaataacttcaatgttcctctaagaactacaactgttggatagcaagggcgcagaaaggtctgcccgaaggattcaatttatgaaactattgattgtg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53094481 cagaataacttcaatgttcctctaagaactacaactgttggatagcaagggcgcagaaaggtcagcccgaaggattcaatttatgaaactattgattgtg 53094382  T
Q  109 attttgtgtgtgaaaatat 127  Q
    |||||||||||||||||||    
T  53094381 attttgtgtgtgaaaatat 53094363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 50170503 - 50170578
Alignment:
Q  249 taaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaa 324  Q
    ||||||| || ||||||||||||||||| |||||||||| |||||| ||||| ||| ||||||||  |||||||||    
T  50170503 taaaaaataaattttatattgaaaagataacttttgaaatttttaagacattgaatgcacaatttccaagaaaaaa 50170578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 16277669 - 16277599
Alignment:
Q  260 ttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaactttta 330  Q
    ||||||||| |||| || |||||||||||||||||  |||| ||| |||||||| ||| ||||||||||||    
T  16277669 ttttatattaaaaatataacttttgaaacttttaaggcattgaatgcacaatttctaaaaaaaaactttta 16277599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 48954002 - 48953928
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaattt 313  Q
    ||||| |||||||  || || ||||||||||||||||| ||||||||||||||||| ||||| |||  |||||||    
T  48954002 aaaatagaattaagtaataaattttatattgaaaagataacttttgaaacttttaaaacattgaatgtacaattt 48953928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 50129171 - 50129092
Alignment:
Q  236 ctaaaaatggaattaaaaaacaagttttat-attgaaaagatgacttttgaaacttttaatacattaaatacacaatttt 314  Q
    |||||||||||||||||||| || |||| | ||||||||||| |  ||| |||||||||||| ||| ||| |||||||||    
T  50129171 ctaaaaatggaattaaaaaataacttttgttattgaaaagataaaatttcaaacttttaatatattgaatgcacaatttt 50129092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 5050591 - 5050677
Alignment:
Q  236 ctaaaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaa 322  Q
    ||||||||||||||||||   || |||| |||||||||||  |  ||| ||| |||||||| ||| ||| |||||||||||||||||    
T  5050591 ctaaaaatggaattaaaatgtaacttttgtattgaaaagacaaaattttaaatttttaatatattgaatgcacaatttttaagaaaa 5050677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 37209933 - 37209836
Alignment:
Q  235 gctaaaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttaca 332  Q
    ||||||||||||||||||| ||||  || ||||||||||||| ||||||||||||||||| | ||||||| ||||||||  |||||||||||| ||||    
T  37209933 gctaaaaatggaattaaaagacaaacttaatattgaaaagataacttttgaaacttttaagatattaaatgcacaatttccaagaaaaaacttctaca 37209836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 37633657 - 37633754
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttacaatta 336  Q
    ||||||||| | ||||| || |||||| ||||||| || ||||||||||||||||| ||||| ||| ||||||||||||||| |||||| ||||||||    
T  37633657 aaaatggaaattaaaaataaattttatgttgaaaatataacttttgaaacttttaagacattgaatgcacaatttttaagaataaacttctacaatta 37633754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 327
Target Start/End: Original strand, 38081608 - 38081697
Alignment:
Q  238 aaaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaactt 327  Q
    |||||| |||||||  || || ||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||  ||||||||||||    
T  38081608 aaaaatagaattaagtaataaattttatattgaaaagataacttttgaaacttttaagacattgaatgcacaatttccaagaaaaaactt 38081697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 41898698 - 41898776
Alignment:
Q  257 aagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttacaatta 336  Q
    |||||||||||||||||||| | |||| |||||||||| | |||||||  ||||||||| ||||| ||||| ||||||||    
T  41898698 aagttttatattgaaaagat-aattttaaaacttttaagatattaaatgtacaattttttagaaagaacttatacaatta 41898776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 337
Target Start/End: Complemental strand, 9424645 - 9424548
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttacaattaa 337  Q
    ||||||||| | ||||| || ||||||||| |||| || ||||||||||||||||| ||||| ||| ||||||||  || ||||||||| |||| ||||    
T  9424645 aaaatggaaattaaaaataaattttatattaaaaatataacttttgaaacttttaa-acattgaatgcacaatttgcaaaaaaaaacttctacatttaa 9424548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 26758573 - 26758520
Alignment:
Q  261 tttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttt 314  Q
    ||||||||||||| || ||||||||||||||||| ||||| ||| |||||||||    
T  26758573 tttatattgaaaatataacttttgaaacttttaacacattgaatgcacaatttt 26758520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 30533241 - 30533306
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaat 304  Q
    ||||| ||||||||| | || |||||||||||||||||  ||||||||| |||||| |||||||||    
T  30533241 aaaatagaattaaaagataaattttatattgaaaagatagcttttgaaatttttaagacattaaat 30533306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 36567364 - 36567449
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaa 324  Q
    ||||| ||||||| ||| || ||||||||||||| ||| | |||||||||||| || ||||| ||| ||||| |||||| ||||||    
T  36567364 aaaatagaattaacaaataaattttatattgaaatgataatttttgaaactttcaagacattgaatgcacaacttttaataaaaaa 36567449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 43457929 - 43458015
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaac 325  Q
    ||||||||| | ||||| || |||||||||||||  || ||||||| ||||||||| ||||| ||| ||||| ||  ||||||||||    
T  43457929 aaaatggaaattaaaaataaattttatattgaaagtataacttttgcaacttttaagacattgaatgcacaagttccaagaaaaaac 43458015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 41024831 - 41024884
Alignment:
Q  260 ttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaattt 313  Q
    |||||||||||||| || ||||||||||||||||| ||||| |||  |||||||    
T  41024831 ttttatattgaaaatataacttttgaaacttttaagacattgaatgtacaattt 41024884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 332
Target Start/End: Original strand, 40112966 - 40113059
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttaca 332  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||| ||||||||  || ||||||||| ||||    
T  40112966 aaaatagatttaaaaaacaagttttatattgaaaagataacttttgaagcttttaagacatcaaatgcacaatttccaataaaaaacttctaca 40113059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 246 - 371
Target Start/End: Original strand, 15595009 - 15595129
Alignment:
Q  246 aattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttacaattaattaatttc 345  Q
    |||||| ||| || |||||||||||||| || ||||||||||||||| | ||||| ||| ||||||||| |||||||||||||||    || || |||||    
T  15595009 aattaagaaataaattttatattgaaaaaataacttttgaaactttt-agacattgaatgcacaattttaaagaaaaaactttta----tatttgatttc 15595103  T
Q  346 ttaacttatgtatcaagggtacaaat 371  Q
    ||||||||||| |||| |||||||||    
T  15595104 ttaacttatgtctcaaaggtacaaat 15595129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 19521545 - 19521468
Alignment:
Q  237 taaaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttt 314  Q
    ||||||||||||||||||| || |||| |||||||||||  |  ||| |||||||||||||||| ||| |||||||||    
T  19521545 taaaaatggaattaaaaaataacttttgtattgaaaagacaaaattttaaacttttaatacattgaatgcacaatttt 19521468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 38869910 - 38870005
Alignment:
Q  236 ctaaaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttaca 332  Q
    |||||||||||| | ||||| || ||||||||| |||| || ||||||| || |||||| | ||| ||| ||||| ||| |||||||||||||||||    
T  38869910 ctaaaaatggaaattaaaaataaattttatatt-aaaatataacttttgcaatttttaagatattgaatgcacaagtttcaagaaaaaacttttaca 38870005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 28041596 - 28041533
Alignment:
Q  262 ttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaac 325  Q
    |||||||||||| || ||||||| ||||||||| |||||||||| |||| ||| || |||||||    
T  28041596 ttatattgaaaatataacttttgtaacttttaagacattaaatatacaagtttcaaaaaaaaac 28041533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 33741650 - 33741704
Alignment:
Q  246 aattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacatt 300  Q
    |||||||||| || |||||||||||||| || ||||||| ||||||||| |||||    
T  33741650 aattaaaaaataaattttatattgaaaatataacttttgcaacttttaaaacatt 33741704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 10647905 - 10647981
Alignment:
Q  246 aattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaa 323  Q
    |||||||||| || || ||||||||||| || | ||||||||||  ||| ||||||||| |||||||||||| |||||    
T  10647905 aattaaaaaataa-ttatatattgaaaatataatttttgaaactgataagacattaaatgcacaatttttaataaaaa 10647981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 356
Target Start/End: Original strand, 3399384 - 3399485
Alignment:
Q  251 aaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttacaattaattaatttcttaac 350  Q
    ||||| || ||||||||||||||||| |||||||||| |||||||||| ||||| || |||||  || ||||||||||||    || |||||||||||||    
T  3399384 aaaaataaattttatattgaaaagataacttttgaaatttttaatacaataaatgcaaaatttccaacaaaaaactttta----tatttaatttcttaac 3399479  T
Q  351 ttatgt 356  Q
    ||||||    
T  3399480 ttatgt 3399485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 46923639 - 46923715
Alignment:
Q  251 aaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaactt 327  Q
    ||||| || |||| |||| |||| || ||||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  46923639 aaaaataaattttgtattcaaaatataacttttgaaacttttaaaacattaaatgcacaattttcaagaaaaaactt 46923715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 31765396 - 31765471
Alignment:
Q  257 aagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttaca 332  Q
    |||||||||||||||||||| ||||||||||||||||| |||| | ||  |||||||  |||||||||||| ||||    
T  31765396 aagttttatattgaaaagataacttttgaaacttttaagacatcagatgtacaatttccaagaaaaaacttctaca 31765471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 6181618 - 6181701
Alignment:
Q  240 aaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaa 324  Q
    |||| ||| ||||||| |||||| |||||||||| || ||||||||||||||||| ||| |||| |||||||||| || ||||||    
T  6181618 aaattgaaataaaaaataagttt-atattgaaaacataacttttgaaacttttaagacactaaaaacacaattttcaaaaaaaaa 6181701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 8240796 - 8240728
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaataca 307  Q
    |||||| || ||||||| |||||||||||| |||| || | ||||||||||||||||||||| ||||||    
T  8240796 aaaatgaaaataaaaaataagttttatatttaaaatataatttttgaaacttttaatacattgaataca 8240728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 247 - 332
Target Start/End: Original strand, 23845573 - 23845656
Alignment:
Q  247 attaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttaca 332  Q
    ||||||||| | ||||||||||||||| || | |||| |||||||||| || |||||| ||||||||||||  |||||||||||||    
T  23845573 attaaaaaatatgttttatattgaaaatataatttttaaaacttttaagac-ttaaatgcacaatttttaa-caaaaacttttaca 23845656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 46276953 - 46277030
Alignment:
Q  236 ctaaaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaattt 313  Q
    |||||||||||||||||||| || |||| |||||||||||  |  ||| |||||||||||| |||||||  |||||||    
T  46276953 ctaaaaatggaattaaaaaataacttttgtattgaaaagacaaaatttcaaacttttaatatattaaatgtacaattt 46277030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 41652022 - 41652083
Alignment:
Q  236 ctaaaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatac 297  Q
    |||||||||||||||||||  || |||| |||||||||||| |  ||| |||||||||||||    
T  41652022 ctaaaaatggaattaaaaagtaacttttgtattgaaaagataaaatttcaaacttttaatac 41652083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 330
Target Start/End: Complemental strand, 2456826 - 2456744
Alignment:
Q  251 aaaaacaagttttatattgaaaaga---tgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaactttta 330  Q
    |||||||| |||||||||||||| |   | ||||||||||||||||||| ||| |||    |||||| |||||||||||||||    
T  2456826 aaaaacaaattttatattgaaaatagtataacttttgaaacttttaatatattgaatgtgtaattttcaagaaaaaactttta 2456744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 332
Target Start/End: Original strand, 6248430 - 6248520
Alignment:
Q  240 aaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttaca 332  Q
    |||||||| ||||||| |||||| ||||| |||| || | ||||||||||||||| ||||||||   |||||||| || ||||| ||||||||    
T  6248430 aaatggaaataaaaaataagttt-atattaaaaacataa-ttttgaaacttttaagacattaaaagtacaattttcaaaaaaaatcttttaca 6248520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 239 - 330
Target Start/End: Original strand, 13435386 - 13435477
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaactttta 330  Q
    ||||||||| ||||||| ||||||| ||||||||| || | |||| |||||||||| | |||||||| |||||||  |||||||||||||||    
T  13435386 aaaatggaaataaaaaataagttttgtattgaaaacataagttttaaaacttttaagaaattaaatatacaatttccaagaaaaaactttta 13435477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 25064122 - 25064228
Alignment:
Q  260 ttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaattt-ttaagaaaaaacttttacaattaattaatttcttaacttatgtat 358  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||  ||||||| | || |||||||||| ||    | ||| ||||||||||||||| |    
T  25064122 ttttatattgaaaagataacttttgaaacttttaagacattgaatttacaatttctaaaaaaaaaactttcac----atttactttcttaacttatgtct 25064217  T
Q  359 caagggtacaa 369  Q
    |||||| ||||    
T  25064218 caagggcacaa 25064228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 51164546 - 51164631
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaa 324  Q
    ||||| |||||||  || || |||||||||||||| || ||||||||||||||||| ||||| ||| |||| |||| |||||||||    
T  51164546 aaaatagaattaagtaataaattttatattgaaaaaataacttttgaaacttttaagacattgaatgcacacttttcaagaaaaaa 51164631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 327
Target Start/End: Original strand, 30617584 - 30617672
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaactt 327  Q
    ||||| |||||| |||  || ||||||||||||| ||| ||||||||||||||||| | ||| ||| ||||||||  ||||||||||||    
T  30617584 aaaatagaattagaaagtaaattttatattgaaaggataacttttgaaacttttaagagattgaatgcacaatttccaagaaaaaactt 30617672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 27382005 - 27382092
Alignment:
Q  236 ctaaaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaa 323  Q
    |||||||||||||||||||  || ||||||||||||||||  |  ||| |||||||||||| ||| |||| |||||||  ||||||||    
T  27382005 ctaaaaatggaattaaaaagtaacttttatattgaaaagacaaaatttcaaacttttaatatattgaatatacaatttccaagaaaaa 27382092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 52355875 - 52355949
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaattt 313  Q
    ||||||||| | ||||| || ||||||| |||||| || ||||||||||||||||| ||||| ||| ||||||||    
T  52355875 aaaatggaaattaaaaataaattttataatgaaaatataacttttgaaacttttaagacattgaatgcacaattt 52355949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 21191011 - 21190954
Alignment:
Q  237 taaaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaa 294  Q
    |||||||| |||||||| ||||  || ||||||||||||| |||||||||||||||||    
T  21191011 taaaaatgaaattaaaagacaaacttaatattgaaaagataacttttgaaacttttaa 21190954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 22318233 - 22318149
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaa 323  Q
    ||||| ||||||| ||| || ||||||||| ||| ||| |||||||||||||| ||  |||||||| ||||| |||||| |||||    
T  22318233 aaaatagaattaacaaataaattttatatttaaatgataacttttgaaactttcaaagcattaaatgcacaacttttaaaaaaaa 22318149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 27247270 - 27247213
Alignment:
Q  237 taaaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaa 294  Q
    |||||||  |||||||| ||||  || ||||||||||||| |||||||||||||||||    
T  27247270 taaaaataaaattaaaagacaaacttaatattgaaaagataacttttgaaacttttaa 27247213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 1875183 - 1875116
Alignment:
Q  257 aagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaa 324  Q
    |||||||||||| |||| || ||||||||||||||||| | |||||||||||| |||| |||||||||    
T  1875183 aagttttatattaaaaatataacttttgaaacttttaaaatattaaatacacatttttcaagaaaaaa 1875116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 26653334 - 26653415
Alignment:
Q  251 aaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttaca 332  Q
    ||||| || ||| |||||||||| || ||||||||||||||||| ||||| |||  |||||||| ||||||||| |||||||    
T  26653334 aaaaataaatttcatattgaaaatataacttttgaaacttttaagacattgaatgtacaattttcaagaaaaaagttttaca 26653415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 26759302 - 26759383
Alignment:
Q  251 aaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttaca 332  Q
    ||||| || ||| |||||||||| || ||||||||||||||||| ||||| |||  |||||||| ||||||||| |||||||    
T  26759302 aaaaataaatttcatattgaaaatataacttttgaaacttttaagacattgaatgtacaattttcaagaaaaaagttttaca 26759383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 13397201 - 13397134
Alignment:
Q  257 aagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaa 324  Q
    |||||| |||||||||| || |||||| |||||||||| ||| ||||| ||||||| |||||||||||    
T  13397201 aagtttaatattgaaaatataacttttaaaacttttaagacactaaatgcacaattattaagaaaaaa 13397134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 28637658 - 28637573
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaa 324  Q
    ||||| |||||||| || || || ||||||||||||||||||||||||| |||||| |  || |||||| ||||| ||||| ||||    
T  28637658 aaaatagaattaaataataaattatatattgaaaagatgacttttgaaatttttaagattttgaatacataatttctaagacaaaa 28637573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 28053555 - 28053473
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaa 321  Q
    ||||| ||| ||||||| |||||||||||| |||| || | ||||||||||||||| | ||||||| ||  |||| |||||||    
T  28053555 aaaatagaaataaaaaataagttttatatttaaaatataagttttgaaacttttaaaatattaaatgcatgatttctaagaaa 28053473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 2764188 - 2764112
Alignment:
Q  251 aaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaactt 327  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||| ||||| |||  ||||  |||||| ||||||||    
T  2764188 aaaaataagtttgatattgaaaagataacttttgaaacttttaagacattgaatgtacaaagtttaaggaaaaactt 2764112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 11563558 - 11563476
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaa 321  Q
    ||||||||| |  |||| || |||||||||||||| || || |||||||||||||| ||||| ||| ||||||||| ||||||    
T  11563558 aaaatggaaatttaaaataaattttatattgaaaatataacctttgaaacttttaagacattgaatgcacaattttcaagaaa 11563476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 15080202 - 15080132
Alignment:
Q  260 ttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaactttta 330  Q
    |||||||||||||  || ||||||| ||||||||| |||||||||||| || |||||| ||||| ||||||    
T  15080202 ttttatattgaaagtataacttttgcaacttttaagacattaaatacataaattttaataaaaacctttta 15080132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 322
Target Start/End: Complemental strand, 37980447 - 37980361
Alignment:
Q  236 ctaaaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaa 322  Q
    |||||||||||||||||||  || |||| ||||||||| || |  ||| |||||||||||| ||| ||| |||||||| ||||||||    
T  37980447 ctaaaaatggaattaaaaagtaacttttgtattgaaaatataaaatttcaaacttttaatatattgaatgcacaatttctaagaaaa 37980361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 44768921 - 44768859
Alignment:
Q  262 ttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaa 324  Q
    |||||| ||||| || |||||||||| |||||| ||||||||| | |||||||||||||||||    
T  44768921 ttatatagaaaatataacttttgaaatttttaagacattaaatgctcaatttttaagaaaaaa 44768859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 2985292 - 2985248
Alignment:
Q  281 tttgaaacttttaatacattaaatacacaatttttaagaaaaaac 325  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||    
T  2985292 tttgaaacttttaagacattgaatgcacaatttttaagaaaaaac 2985248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 38606873 - 38606917
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgactttt 283  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||    
T  38606873 aaaatgaaattaaaaaataagttttatattgaaaagataactttt 38606917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 330
Target Start/End: Complemental strand, 34070874 - 34070795
Alignment:
Q  251 aaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaactttta 330  Q
    ||||| || |||||||||||||  || ||||||| ||||||||| ||||| ||| ||||| ||| |||||||| ||||||    
T  34070874 aaaaataaattttatattgaaagtattacttttgcaacttttaaaacattgaatgcacaagtttcaagaaaaatctttta 34070795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 37625071 - 37624996
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttt 314  Q
    ||||||||| | ||||| || |||||||||||||| || |||||| |||||||||| | ||| ||| |||||||||    
T  37625071 aaaatggaaattaaaaataaattttatattgaaaatataacttttaaaacttttaagatattgaatgcacaatttt 37624996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 37029004 - 37028930
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaattt 313  Q
    ||||||||| ||||||| |||||||||||| |||  ||  ||||||| | |||||| ||||| ||||||||||||    
T  37029004 aaaatggaaataaaaaataagttttatattaaaattatatcttttgagatttttaagacattgaatacacaattt 37028930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 332
Target Start/End: Complemental strand, 8060037 - 8059944
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaaacttttaca 332  Q
    ||||||||| ||||||| |||||||||||| ||   || |||||||| |||||||| ||||| ||| ||||||||  ||| |||||||| ||||    
T  8060037 aaaatggaaataaaaaataagttttatattaaatttataacttttgagacttttaagacattgaatgcacaatttccaagcaaaaacttctaca 8059944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 18184409 - 18184493
Alignment:
Q  239 aaaatggaattaaaaaacaagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttttaagaaaaa 323  Q
    ||||| ||||||| ||| || ||| ||||| ||| ||| |||||||||||||| ||  |||| ||| ||||| ||||||||||||    
T  18184409 aaaatagaattaacaaataaatttaatatttaaatgataacttttgaaactttcaaagcattgaatgcacaacttttaagaaaaa 18184493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 45336906 - 45336942
Alignment:
Q  296 acattaaatacacaatttttaagaaaaaacttttaca 332  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  45336906 acattaaatacacaatttctaagaaaaaacttgtaca 45336942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 1705 - 1784
Alignment:
Q  236 ctaaaaatggaattaaaaaac-aagttttatattgaaaagatgacttttgaaacttttaatacattaaatacacaatttt 314  Q
    |||||||| |||||||||||  || |||| |||||||||||  |  ||| |||||||||||| |||||||||||||||||    
T  1705 ctaaaaattgaattaaaaaagtaacttttgtattgaaaagacaaaattttaaacttttaatatattaaatacacaatttt 1784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University