View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5965-Insertion-7 (Length: 525)
Name: NF5965-Insertion-7
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965-Insertion-7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 12 - 523
Target Start/End: Complemental strand, 13714020 - 13713497
Alignment:
| Q |
12 |
atttccatcattctttcacatcaacagtggtacttgcaagccaagttttaggtgaagtaaacgtttttatttatgcaagcgtattatagttatttggttt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13714020 |
atttccatcattctttcacatcaacagtggtacttgcaagccaagttttaggtgaagtaaacatttttatttatgcaagtgtattatagttatttggttt |
13713921 |
T |
|
| Q |
112 |
ggtatgtatgcatacacaatttgtccaaactaaacaagcttg------------agaatccattaatctcaaaactaaaaacacatacaatatgaatctc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713920 |
ggtatgtatgcatacacaatttgtccaaattaaacaagcttgcacacaggcttgagaatccattaatctcaaaactaaaaacacatacaatatgaatctc |
13713821 |
T |
|
| Q |
200 |
tctgtatactataacatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713820 |
tctgtatactataacatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaa |
13713721 |
T |
|
| Q |
300 |
ctaccatggttgaagctcaatggcacttcaaaaggactaatattaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatgg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713720 |
ctaccatggttgaagctcaatggcacttcaaaaggactaatatcaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatgg |
13713621 |
T |
|
| Q |
400 |
tgctacggccatcattacactttaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtataatgtccacactgataaccagcagcaca |
499 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13713620 |
tgctacgaccatcattacacttaaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtataatgtccacactgataaccaacagcaca |
13713521 |
T |
|
| Q |
500 |
tgaattactgttgtaattatagta |
523 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13713520 |
tgaattactgttgtaattatagta |
13713497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University