View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965-Insertion-8 (Length: 416)
Name: NF5965-Insertion-8
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965-Insertion-8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 416
Target Start/End: Complemental strand, 39560418 - 39560016
Alignment:
| Q |
9 |
gaagagacttcggtcaatgaaattcacccatgtggaactttatannnnnnngcttaaatataccgttggttctttatcttttacnnnnnnnnnnnntgtc |
108 |
Q |
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| T |
39560418 |
gaagagacttcggtcaatgaaattcacccatgtggaactttatatttttttgcttaaatataccgttggttctttatcttttacaaaaaaaata--tgtc |
39560321 |
T |
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| Q |
109 |
tgggccatttatcttannnnnnnaatatgttttgatgatctattttttcaaaaagattcatgttttagtcatttaatcagaaatcataacataagttaat |
208 |
Q |
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| T |
39560320 |
tgggccatttatcttatttttt-aacatgttttgatgatttattttttcaaaaagattcatgttttagtcatttaatcagaaatcataacataagttaat |
39560222 |
T |
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| Q |
209 |
ggaagtttaatatgtggcattcacgatgttaacataaactcatgtagcatataagagggaaaaacgacgtcgctttttaggaatactaggaaggaatgta |
308 |
Q |
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| T |
39560221 |
ggaagtttaatatgtggcattcacgatgttaacataaactcatatgacatagaagagggaaacacgacgtcgctttttaggaatactaggaaagaatgta |
39560122 |
T |
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| Q |
309 |
gaaacacaaagaacgtaagcgtttgaaggagaatttgatgtgatgcctttgaaggaaaactatttgttacgacgactttgaaggagattataaattgctg |
408 |
Q |
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| T |
39560121 |
gaaacacaaagaacgtaagcgtttgaaggagaatttgatgtgatgcctttgaaggaaaacaatttgttacgatgtctttgaaggagat--taaattgctg |
39560024 |
T |
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| Q |
409 |
caacatgt |
416 |
Q |
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| T |
39560023 |
caacatgt |
39560016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 29069509 - 29069415
Alignment:
| Q |
153 |
ttttcaaaaagattcatgttttagtcatttaatcagaaatcataacataagttaatggaagtttaatatgtggcattcacgatgttaacataaac |
247 |
Q |
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| T |
29069509 |
tttttaaaaagattcatgttttagtcctttagtcataaagcataacataagttaacggaagtttaatacgtggcaattacggtgttaacataaac |
29069415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 24371088 - 24371174
Alignment:
| Q |
185 |
tcagaaatcataacataagttaatggaagtttaatatgtggcattcacgatgttaacataaactcatgtagcatataagagggaaaa |
271 |
Q |
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| T |
24371088 |
tcagaaatcatagcataagttaatagaagtttaatatgtggcagttacagtgttaacataaactcatgtggcacaaaagagggaaaa |
24371174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 43005006 - 43005060
Alignment:
| Q |
153 |
ttttcaaaaagattcatgttttagtcatttaatcagaaatcataacataagttaa |
207 |
Q |
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| T |
43005006 |
tttttaaaaagattcatgttttagtcatttagtcagaaatcatgacacaagttaa |
43005060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 37936379 - 37936440
Alignment:
| Q |
159 |
aaaagattcatgttttagtcatttaatcagaaatcataacataagttaatggaagtttaata |
220 |
Q |
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| T |
37936379 |
aaaagattcacgatttagtcctttagtcataaatcataacataagttcatagaagtttaata |
37936440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 43005127 - 43005174
Alignment:
| Q |
265 |
gggaaaaacgacgtcgctttttaggaatactaggaaggaatgtagaaa |
312 |
Q |
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| T |
43005127 |
gggaaaaacgacgtcgttttttaggaatactaagaacgaatgttgaaa |
43005174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 3109040 - 3108937
Alignment:
| Q |
171 |
ttttagtcatttaatcagaaatcataacataagttaatggaagtttaatatgtggcattcacgatgttaacataaactcatgtagcatataagagggaaa |
270 |
Q |
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||||||| ||||| || ||||||||||||||||||| |||||||||| |||||| | |||||||||| | | |||||||| ||||| || ||||||| |
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| T |
3109040 |
ttttagttatttagtcgcaaatcataacataagttaaaagaagtttaat--gtggcaattacgatgttaatacatactcatgtggcataaaacagggaaa |
3108943 |
T |
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| Q |
271 |
aacgac |
276 |
Q |
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| T |
3108942 |
aacgac |
3108937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 44005565 - 44005702
Alignment:
| Q |
170 |
gttttagtcatttaatcagaaatcataacataagttaatggaagtttaatatgtggcattcacgatgttaacataaactcatgtagcatataagagggaa |
269 |
Q |
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||||||||| || | | |||||||||| |||||||||| |||||||||| ||| | | | ||||||||||||| ||||| |||| ||||||||| |
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| T |
44005565 |
gttttagtctttcagttagaaatcataccataagttaactaaagtttaatacatggtaattattgtgttaacataaacgcatgtgacatagaagagggaa |
44005664 |
T |
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| Q |
270 |
aaacgacgtcgctttttaggaatactaggaaggaatgt |
307 |
Q |
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| T |
44005665 |
aaacgatgtcggtttttaggagcaatgggaaggaatgt |
44005702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 22838804 - 22838887
Alignment:
| Q |
187 |
agaaatcataacataagttaatggaagtttaatatgtggcattcacgatgttaacataaactcatgtagcatataagagggaaaa |
271 |
Q |
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| T |
22838804 |
agaaatcataacataagttaacggaagataaatatgtagcaattatagtgttaacat-aacccatgtggcatagaagagggaaaa |
22838887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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