View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5965-Insertion-9 (Length: 382)

Name: NF5965-Insertion-9
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5965-Insertion-9
NF5965-Insertion-9
[»] chr6 (9 HSPs)
chr6 (9-382)||(4046730-4047103)
chr6 (141-246)||(14936467-14936572)
chr6 (141-263)||(6330113-6330235)
chr6 (141-246)||(5685354-5685459)
chr6 (161-246)||(6068970-6069055)
chr6 (141-261)||(2830335-2830455)
chr6 (141-261)||(8382979-8383099)
chr6 (141-261)||(11572155-11572275)
chr6 (141-261)||(26602323-26602443)
[»] chr2 (15 HSPs)
chr2 (141-246)||(23227282-23227387)
chr2 (141-228)||(13724112-13724199)
chr2 (149-225)||(40713978-40714054)
chr2 (141-262)||(37666620-37666741)
chr2 (141-261)||(3055558-3055678)
chr2 (141-261)||(13197720-13197840)
chr2 (217-261)||(15258791-15258835)
chr2 (141-261)||(15372226-15372346)
chr2 (141-261)||(15896842-15896962)
chr2 (141-261)||(16044327-16044447)
chr2 (165-229)||(31469095-31469159)
chr2 (141-261)||(37990023-37990143)
chr2 (141-261)||(41478649-41478769)
chr2 (141-261)||(44397547-44397667)
chr2 (141-261)||(44398686-44398806)
[»] chr4 (12 HSPs)
chr4 (156-250)||(31013032-31013126)
chr4 (143-261)||(1716301-1716417)
chr4 (165-264)||(44900077-44900176)
chr4 (141-261)||(3904693-3904813)
chr4 (141-261)||(47838627-47838747)
chr4 (141-261)||(48336263-48336383)
chr4 (141-261)||(3372121-3372241)
chr4 (215-263)||(4780379-4780427)
chr4 (141-261)||(5986876-5986996)
chr4 (141-185)||(42797808-42797852)
chr4 (141-261)||(43900549-43900669)
chr4 (141-261)||(47833611-47833731)
[»] chr7 (7 HSPs)
chr7 (141-261)||(28469481-28469601)
chr7 (141-261)||(7482225-7482345)
chr7 (141-261)||(1738457-1738577)
chr7 (141-261)||(7240749-7240869)
chr7 (141-261)||(38063923-38064043)
chr7 (141-261)||(38441460-38441580)
chr7 (141-261)||(46840860-46840980)
[»] chr3 (18 HSPs)
chr3 (145-247)||(53275309-53275411)
chr3 (161-261)||(9213516-9213616)
chr3 (141-264)||(37508918-37509041)
chr3 (141-261)||(17653712-17653832)
chr3 (141-261)||(46208030-46208150)
chr3 (146-229)||(50989505-50989589)
chr3 (146-229)||(51092637-51092721)
chr3 (141-246)||(9111504-9111609)
chr3 (141-261)||(4238594-4238714)
chr3 (217-261)||(5237540-5237584)
chr3 (141-261)||(10297979-10298099)
chr3 (141-261)||(19557062-19557182)
chr3 (141-185)||(21295336-21295380)
chr3 (141-261)||(22721931-22722051)
chr3 (141-261)||(34080040-34080160)
chr3 (145-269)||(44785410-44785534)
chr3 (141-261)||(49823391-49823511)
chr3 (141-261)||(51406673-51406793)
[»] scaffold0171 (1 HSPs)
scaffold0171 (148-265)||(12370-12487)
[»] chr5 (5 HSPs)
chr5 (172-265)||(27080981-27081074)
chr5 (141-261)||(36563548-36563668)
chr5 (142-261)||(11795168-11795287)
chr5 (141-261)||(9395350-9395470)
chr5 (163-263)||(11574112-11574212)
[»] scaffold0204 (1 HSPs)
scaffold0204 (141-261)||(23785-23905)
[»] scaffold0009 (1 HSPs)
scaffold0009 (141-261)||(49505-49625)
[»] chr8 (12 HSPs)
chr8 (141-261)||(3304288-3304408)
chr8 (141-261)||(12763664-12763784)
chr8 (141-260)||(30171483-30171602)
chr8 (141-262)||(31654612-31654733)
chr8 (141-261)||(54622-54742)
chr8 (141-261)||(2890172-2890292)
chr8 (141-261)||(6552655-6552775)
chr8 (141-261)||(7785788-7785908)
chr8 (141-261)||(12343150-12343270)
chr8 (141-261)||(25601010-25601130)
chr8 (141-261)||(32114485-32114605)
chr8 (141-261)||(43199364-43199484)
[»] scaffold0650 (1 HSPs)
scaffold0650 (166-229)||(20-83)
[»] scaffold0464 (1 HSPs)
scaffold0464 (141-263)||(6141-6263)
[»] chr1 (7 HSPs)
chr1 (141-263)||(39401976-39402098)
chr1 (141-261)||(9981647-9981767)
chr1 (141-261)||(11897054-11897174)
chr1 (141-261)||(27159368-27159488)
chr1 (141-261)||(31842805-31842925)
chr1 (141-261)||(44668103-44668223)
chr1 (141-185)||(44955216-44955260)
[»] scaffold0017 (1 HSPs)
scaffold0017 (161-254)||(30037-30130)


Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 382
Target Start/End: Original strand, 4046730 - 4047103
Alignment:
Q  9 aactatacataaatagtataatcacatttcattatattggtacatcacaatgttacttctcaaaaccaattgacactaagattatgaaatatgtttggac 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  4046730 aactatacataaatagtataatcacatttcattatattggtacatcacaatgttacttctcaaaactaattgacactaagattatgaaatatgtttgtac 4046829  T
Q  109 atatgcataannnnnnnacaataatattcgcaggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaat 208  Q
    ||||||||||       ||||||||| |||||| |||||||||||||||| ||||| ||||||||||||  || |||||   ||| ||||||||| ||||    
T  4046830 atatgcataatttttttacaataatactcgcagatcctatttataaggaatttttaagtcaacaaaagaaaatatatttaaataaaaatttggattaaat 4046929  T
Q  209 atatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagtagttaccatactcgaaaattgttgacatacaaataacatggtaccttt 308  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4046930 atatcgatttttgtagaccaaaacgtcttttataaataagatcagagggagtagttaccatactcgaaaattgttgacatacaaataacatggtaccttt 4047029  T
Q  309 ttcttccatttgtgtattctctttccaacggcaatcaatgacatatatggcaactttttcaccagtcaatacat 382  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4047030 ttcttccatttgtgtattctctttccaacggcaatcaatgagatatatggcaactttttcaccagtcaatacat 4047103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 14936467 - 14936572
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||| || ||| ||| |||||||||||||||| |||||||| | | ||||||||||   |||||| ||| ||| ||||||||| |||  ||| |||    
T  14936467 ggtcctatatagaagaaacatttaggtcaacaaaaggtgatgtatctagttaagaatttgttccaaatacatcaactattgttgacccaaatatctctta 14936566  T
Q  241 taaata 246  Q
    ||||||    
T  14936567 taaata 14936572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 263
Target Start/End: Complemental strand, 6330235 - 6330113
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  6330235 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 6330136  T
Q  241 taaataagatcggagggagtagt 263  Q
    |||||| || |||||| ||||||    
T  6330135 taaataggaccggaggtagtagt 6330113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 5685459 - 5685354
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||| |||||||||| ||| ||| ||||| ||||| ||||||||  | | ||| |||||||  |||||| ||| ||||||||||||| ||| || |||||    
T  5685459 ggtcttatttataagaaacatttgggtcagcaaaatatgatgtaacttgttaataatttggtccaaatacatcaacttttgttgacccaaatgtttttta 5685360  T
Q  241 taaata 246  Q
    | ||||    
T  5685359 ttaata 5685354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 6068970 - 6069055
Alignment:
Q  161 tttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaata 246  Q
    |||||||||||||||||||| ||||   | ||| ||||| || |||||| ||  ||||||||||||| |||  |||||||||||||    
T  6068970 tttaggtcaacaaaagatgaagtatcgagttaaaaatttagaccaaatacattaacttttgttgacctaaatatcttttataaata 6069055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 2830455 - 2830335
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  2830455 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 2830356  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  2830355 taaataggaccggaggtagta 2830335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 8382979 - 8383099
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  8382979 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 8383078  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  8383079 taaataggaccggaggtagta 8383099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 11572155 - 11572275
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  11572155 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 11572254  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  11572255 taaataggaccggaggtagta 11572275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 26602443 - 26602323
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  26602443 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 26602344  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  26602343 taaataggaccggaggtagta 26602323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 23227282 - 23227387
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||| |||||||||| ||  |||||||||||||||  |||||||| || ||||||||||||| |||||| ||| ||||||||||||||||| |||| |||    
T  23227282 ggtcatatttataagaaatatttaggtcaacaaaatgtgatgtatctgactaagaatttggaccaaatacatcaacttttgttgaccaaaatgtctctta 23227381  T
Q  241 taaata 246  Q
    ||||||    
T  23227382 taaata 23227387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 13724112 - 13724199
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgacca 228  Q
    ||||||||||| |||  || | |||||||||||||| |||||||||||| ||| || ||||| || ||| ||| ||||||||||||||    
T  13724112 ggtcctatttacaagagacatctaggtcaacaaaagttgatgtatttggttaaaaaattggaccagatacatcaacttttgttgacca 13724199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 40714054 - 40713978
Alignment:
Q  149 ttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttga 225  Q
    |||||||  |||| |||||||||||||| |||||||||||| | | ||| |||| |||||| |||||||||| ||||    
T  40714054 ttataagagacttgtaggtcaacaaaagttgatgtatttggttcataatatggaccaaatacatcgacttttattga 40713978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 37666620 - 37666741
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| ||||||| |||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||| |||  ||| |||    
T  37666620 ggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctctta 37666719  T
Q  241 taaataagatcggagggagtag 262  Q
    |||||| || |||||| |||||    
T  37666720 taaataggaccggaggtagtag 37666741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 3055678 - 3055558
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  3055678 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 3055579  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  3055578 taaataggaccggaggtagta 3055558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 13197720 - 13197840
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  13197720 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 13197819  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  13197820 taaataggaccggaggtagta 13197840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 15258835 - 15258791
Alignment:
Q  217 ttttgttgaccaaaacgtcttttataaataagatcggagggagta 261  Q
    ||||||||||  |||||||||| |||||||||||||||| |||||    
T  15258835 ttttgttgactcaaacgtctttaataaataagatcggagagagta 15258791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 15372346 - 15372226
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  15372346 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctcgttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 15372247  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| ||  ||||||||||    
T  15372246 taaataggactggagggagta 15372226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 15896962 - 15896842
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  15896962 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 15896863  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  15896862 taaataggaccggaggtagta 15896842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 16044327 - 16044447
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| ||||||| |||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||| |||  ||| |||    
T  16044327 ggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctctta 16044426  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  16044427 taaataggaccggaggtagta 16044447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 31469095 - 31469159
Alignment:
Q  165 ggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaa 229  Q
    |||||||||||| | |||||||||| ||| |||||| |||||||| ||  ||||| |||||||||    
T  31469095 ggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaa 31469159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 37990023 - 37990143
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  37990023 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 37990122  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  37990123 taaataggaccggaggtagta 37990143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 41478649 - 41478769
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  41478649 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 41478748  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  41478749 taaataggaccggaggtagta 41478769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 44397667 - 44397547
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  44397667 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 44397568  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  44397567 taaataggaccggaggtagta 44397547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 44398806 - 44398686
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  44398806 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 44398707  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  44398706 taaataggaccggaggtagta 44398686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 31013126 - 31013032
Alignment:
Q  156 gaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagat 250  Q
    |||| ||||||||||||||||||||||||| | | |||||||||  | |||||| ||| ||||||||||| | ||| ||||||||||||||||||    
T  31013126 gaacatttaggtcaacaaaagatgatgtatctagttaagaatttaaaccaaatacatctacttttgttgatctaaatgtcttttataaataagat 31013032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 1716417 - 1716301
Alignment:
Q  143 tcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttata 242  Q
    |||||||||||||  |  ||||||||||| |||| ||||| || ||| ||| |  |||||||| ||| ||| ||||||||||||||||   ||| |||||    
T  1716417 tcctatttataagagaagtttaggtcaaccaaagttgatgcatctggttaaaa--ttggatcagatacatcaacttttgttgaccaaattatctcttata 1716320  T
Q  243 aataagatcggagggagta 261  Q
    ||||||| |||||||||||    
T  1716319 aataagaccggagggagta 1716301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 44900176 - 44900077
Alignment:
Q  165 ggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagtagtt 264  Q
    |||||||||||| ||| |||| ||| |||  | ||||| || ||||||| |||||||||||||| ||  ||| ||||||||| || ||||||||||||||    
T  44900176 ggtcaacaaaagttgacgtatctggttaaacaattggaccagatatatcaacttttgttgaccagaatatctcttataaataggaccggagggagtagtt 44900077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 3904693 - 3904813
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||  |||||||||| | ||| ||||  |  |||||| ||  ||||||||||||| |||  |||||||    
T  3904693 ggtcctatttataagagaattttgggtcaacaaaaattgatgtatttagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctttta 3904792  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  3904793 taaataggaccggaggtagta 3904813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 47838627 - 47838747
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  47838627 ggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgaccgaaatttctctta 47838726  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| ||||||||| ||||    
T  47838727 taaataggatcggaggtagta 47838747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 48336383 - 48336263
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    ||||||||||||||| || |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  48336383 ggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 48336284  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  48336283 taaataggaccggaggtagta 48336263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 3372241 - 3372121
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  3372241 ggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 3372142  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  3372141 taaataggaccggaggtagta 3372121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 4780379 - 4780427
Alignment:
Q  215 acttttgttgaccaaaacgtcttttataaataagatcggagggagtagt 263  Q
    |||||||||||||||||  ||| ||||||||| || |||||||||||||    
T  4780379 acttttgttgaccaaaatttctcttataaataggaccggagggagtagt 4780427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 5986996 - 5986876
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||||| | ||| ||||  |  |||||| ||  ||||||||||||| | |  ||| |||    
T  5986996 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattcacttttgttgacctatatttctctta 5986897  T
Q  241 taaataagatcggagggagta 261  Q
    ||||||  |||||||| ||||    
T  5986896 taaatagaatcggaggtagta 5986876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 42797852 - 42797808
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtat 185  Q
    |||||||||||||||  | ||||||||||||||||| ||||||||    
T  42797852 ggtcctatttataagagaattttaggtcaacaaaagttgatgtat 42797808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 43900669 - 43900549
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| ||| |||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  43900669 ggtcctatttataagagaattttgggttaacaaaagttgatgtatctagttaaaaattcagtccaaatacatttacttttgttgacctaaatttctctta 43900570  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||||||||    
T  43900569 taaataggaccggagggagta 43900549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 47833731 - 47833611
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  47833731 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 47833632  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  47833631 taaataggaccggaggtagta 47833611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 28469601 - 28469481
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||| |||||||||| | | |||||||||| ||||  |||||||| ||  ||| |||||||| |  ||| ||  ||||||||||||| ||| ||||||||    
T  28469601 ggtcatatttataagaatcatttaggtcaataaaatgtgatgtatctgattaataatttggacctgatacattaacttttgttgacctaaatgtctttta 28469502  T
Q  241 taaataagatcggagggagta 261  Q
    |||||||||||| ||||||||    
T  28469501 taaataagatcgaagggagta 28469481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 7482345 - 7482225
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||| |||  ||| |||    
T  7482345 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctctta 7482246  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  7482245 taaataggaccggaggtagta 7482225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 1738457 - 1738577
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  1738457 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 1738556  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  1738557 taaataggaccggaggtagta 1738577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 7240869 - 7240749
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  7240869 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 7240770  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  7240769 taaataggaccggaggtagta 7240749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 38063923 - 38064043
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  38063923 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 38064022  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  38064023 taaataggaccggaggtagta 38064043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 38441580 - 38441460
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||  |||  ||| |||    
T  38441580 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacataaatttctctta 38441481  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  38441480 taaataggaccggaggtagta 38441460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 46840980 - 46840860
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  46840980 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 46840881  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  46840880 taaataggaccggaggtagta 46840860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 53275411 - 53275309
Alignment:
Q  145 ctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaa 244  Q
    ||||||||||| ||  || |||||||||||| ||||||||| |   ||||||||||||| ||||| ||| | ||||||||||| |||  |||||||||||    
T  53275411 ctatttataagaaatattaaggtcaacaaaatatgatgtatctaattaagaatttggattaaatacatcaatttttgttgacccaaatatcttttataaa 53275312  T
Q  245 taa 247  Q
    |||    
T  53275311 taa 53275309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 9213616 - 9213516
Alignment:
Q  161 tttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagt 260  Q
    |||||||||||||||  |||||||||||| ||  || || |  || ||| ||| |||||||||||| |||| |||||||||||||| || ||||||||||    
T  9213616 tttaggtcaacaaaaattgatgtatttggttataaaattagtccagatacatcaacttttgttgactaaaatgtcttttataaataggaccggagggagt 9213517  T
Q  261 a 261  Q
    |    
T  9213516 a 9213516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 37509041 - 37508918
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  37509041 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 37508942  T
Q  241 taaataagatcggagggagtagtt 264  Q
    |||||| || ||||||||||||||    
T  37508941 taaataggaccggagggagtagtt 37508918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 17653832 - 17653712
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  17653832 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 17653733  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||||||||    
T  17653732 taaataggaccggagggagta 17653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 46208150 - 46208030
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | ||||||||||||||||| |||||||| |   ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  46208150 ggtcctatttataagagaattttaggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 46208051  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||||||||    
T  46208050 taaataggaccggagggagta 46208030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 50989589 - 50989505
Alignment:
Q  146 tatttataaggaacttttaggtcaacaaaagatgatgta-tttggctaagaatttggatcaaatatatcgacttttgttgaccaa 229  Q
    |||||||||| || ||||| ||||| ||||||||||||| ||||| |||||||||| |  ||||||||  |||||| ||||||||    
T  50989589 tatttataagaaatttttatgtcaataaaagatgatgtattttggttaagaatttgaactaaatatattaacttttcttgaccaa 50989505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 51092721 - 51092637
Alignment:
Q  146 tatttataaggaacttttaggtcaacaaaagatgatgta-tttggctaagaatttggatcaaatatatcgacttttgttgaccaa 229  Q
    |||||||||| || ||||| ||||| ||||||||||||| ||||| |||||||||| |  ||||||||  |||||| ||||||||    
T  51092721 tatttataagaaatttttatgtcaataaaagatgatgtattttggttaagaatttgaactaaatatattaacttttcttgaccaa 51092637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 9111504 - 9111609
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||| |||  ||| |||    
T  9111504 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctctta 9111603  T
Q  241 taaata 246  Q
    ||||||    
T  9111604 taaata 9111609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 4238714 - 4238594
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  4238714 ggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 4238615  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  4238614 taaataggaccggaggtagta 4238594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 5237584 - 5237540
Alignment:
Q  217 ttttgttgaccaaaacgtcttttataaataagatcggagggagta 261  Q
    |||||||||  |||||||||||||||||||||||| || ||||||    
T  5237584 ttttgttgaaaaaaacgtcttttataaataagatcagaaggagta 5237540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 10298099 - 10297979
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  10298099 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 10298000  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  10297999 taaataggaccggaggtagta 10297979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 19557062 - 19557182
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  19557062 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 19557161  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  19557162 taaataggaccggaggtagta 19557182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 21295336 - 21295380
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtat 185  Q
    |||||||||||||||  | ||||||||||||||||| ||||||||    
T  21295336 ggtcctatttataagagaattttaggtcaacaaaagttgatgtat 21295380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 22722051 - 22721931
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  22722051 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 22721952  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  22721951 taaataggaccggaggtagta 22721931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 34080040 - 34080160
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  34080040 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatcttgttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 34080139  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  34080140 taaataggaccggaggtagta 34080160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 269
Target Start/End: Original strand, 44785410 - 44785534
Alignment:
Q  145 ctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaa 244  Q
    |||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||||||    
T  44785410 ctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaa 44785509  T
Q  245 taagatcggagggagtagttaccat 269  Q
    || || |||||| |||| |||||||    
T  44785510 taggaccggaggtagtatttaccat 44785534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 49823391 - 49823511
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  49823391 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 49823490  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  49823491 taaataggaccggaggtagta 49823511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 51406793 - 51406673
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||  |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  51406793 ggtcctatttataagagaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 51406694  T
Q  241 taaataagatcggagggagta 261  Q
    ||||||||| |||||| ||||    
T  51406693 taaataagaccggaggtagta 51406673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 265
Target Start/End: Original strand, 12370 - 12487
Alignment:
Q  148 tttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataa 247  Q
    |||||||| ||| || ||||||||||||  |||||||| ||| ||||||||| || |||| | | | |||||| ||||||||||  ||| |||||||||     
T  12370 tttataagaaacattcaggtcaacaaaatgtgatgtatctggttaagaatttagaccaaacacaccaactttttttgaccaaaatatctcttataaatag 12469  T
Q  248 gatcggagggagtagtta 265  Q
    || |||||||| ||||||    
T  12470 gaccggagggaatagtta 12487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 27080981 - 27081074
Alignment:
Q  172 aaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagtagtta 265  Q
    |||||||||| ||||||  ||| ||||| ||| ||||| ||| ||||||||||||| ||| |||| || |||||| |||||||  |||||||||    
T  27080981 aaaagatgatttatttgattaaaaatttagattaaatacatcaacttttgttgacctaaatgtctcttgtaaataggatcggaaagagtagtta 27081074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 36563548 - 36563668
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  36563548 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 36563647  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| ||||||||| ||||    
T  36563648 taaataggatcggaggtagta 36563668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 11795287 - 11795168
Alignment:
Q  142 gtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttat 241  Q
    ||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| ||||    
T  11795287 gtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttat 11795188  T
Q  242 aaataagatcggagggagta 261  Q
    ||||| ||||||||| ||||    
T  11795187 aaataggatcggaggtagta 11795168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 9395470 - 9395350
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  9395470 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 9395371  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  9395370 taaataggaccggaggtagta 9395350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 11574112 - 11574212
Alignment:
Q  163 taggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagtag 262  Q
    |||||||||||||| | |||||| | | ||| || ||||| || |||| || | ||||||||||| ||| |||| ||||||||| || ||||| ||||||    
T  11574112 taggtcaacaaaagttaatgtatctagttaacaaattggaccagatatttcaatttttgttgacctaaatgtctcttataaataggaccggagagagtag 11574211  T
Q  263 t 263  Q
    |    
T  11574212 t 11574212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 23905 - 23785
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    ||||||||||||||| || |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  23905 ggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 23806  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  23805 taaataggaccggaggtagta 23785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 49625 - 49505
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||||| | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  49625 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 49526  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  49525 taaataggaccggaggtagta 49505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 3304288 - 3304408
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    ||||||||||||||| || |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  3304288 ggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 3304387  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  3304388 taaataggaccggaggtagta 3304408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 12763664 - 12763784
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  12763664 ggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 12763763  T
Q  241 taaataagatcggagggagta 261  Q
    ||||||||| |||||| ||||    
T  12763764 taaataagaccggaggtagta 12763784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 30171602 - 30171483
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    ||||| ||||||||| ||| |||| ||||||||||   ||||||| ||  |||||||||||| ||| || ||  ||||||||||||  |||  ||| ||     
T  30171602 ggtcccatttataagaaacatttaagtcaacaaaatgcgatgtatctgattaagaatttggaccaagtacattaacttttgttgactcaaaattctcttg 30171503  T
Q  241 taaataagatcggagggagt 260  Q
    |||||| |||||||||||||    
T  30171502 taaataggatcggagggagt 30171483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 31654733 - 31654612
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    ||||||||||||||   | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  31654733 ggtcctatttataaaagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 31654634  T
Q  241 taaataagatcggagggagtag 262  Q
    |||||| || ||||||||||||    
T  31654633 taaataggaccggagggagtag 31654612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 54622 - 54742
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  54622 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 54721  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  54722 taaataggaccggaggtagta 54742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 2890172 - 2890292
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  2890172 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 2890271  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  2890272 taaataggaccggaggtagta 2890292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 6552775 - 6552655
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  6552775 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 6552676  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  6552675 taaataggaccggaggtagta 6552655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 7785788 - 7785908
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  7785788 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 7785887  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  7785888 taaataggaccggaggtagta 7785908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 12343150 - 12343270
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  12343150 ggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 12343249  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  12343250 taaataggaccggaggtagta 12343270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 25601010 - 25601130
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| | |||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  25601010 ggtcctatttataagagaattttgggtcaacaaaagttaatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 25601109  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| ||||||||| ||||    
T  25601110 taaataggatcggaggtagta 25601130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 32114485 - 32114605
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    ||||||||||||||| || |||| |||||||||||  |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  32114485 ggtcctatttataagaaaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 32114584  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  32114585 taaataggaccggaggtagta 32114605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 43199364 - 43199484
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  43199364 ggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 43199463  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  43199464 taaataggaccggaggtagta 43199484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 20 - 83
Alignment:
Q  166 gtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaa 229  Q
    ||||||||||| |||||||||||| ||| ||||| |  |||||| ||| |||||||||||||||    
T  20 gtcaacaaaagttgatgtatttggttaaaaatttagtccaaatacatcaacttttgttgaccaa 83  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 6141 - 6263
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    ||||||||||||||| || |||| |||||||||||| |||||||| | | ||| ||||  |  || ||| ||  ||||||||||||| |||  ||| |||    
T  6141 ggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccacatacattcacttttgttgacctaaatttctctta 6240  T
Q  241 taaataagatcggagggagtagt 263  Q
    |||||| || |||||| ||||||    
T  6241 taaataggaccggaggtagtagt 6263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 39401976 - 39402098
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  39401976 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 39402075  T
Q  241 taaataagatcggagggagtagt 263  Q
    |||||| || |||||| ||||||    
T  39402076 taaataggaccggaggtagtagt 39402098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 9981767 - 9981647
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  9981767 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 9981668  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  9981667 taaataggaccggaggtagta 9981647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 11897174 - 11897054
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  |  ||| |||||||||||| ||||||||  || ||| ||||  | ||| ||| ||| ||||||||||||| ||   ||| |||    
T  11897174 ggtcctatttataagagaaatttgggtcaacaaaagttgatgtatccggttaaaaattcagttcagatacatcaacttttgttgacctaactttctctta 11897075  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||||||||    
T  11897074 taaataggaccggagggagta 11897054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 27159368 - 27159488
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  27159368 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 27159467  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  27159468 taaataggaccggaggtagta 27159488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 31842805 - 31842925
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  31842805 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 31842904  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  31842905 taaataggaccggaggtagta 31842925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 44668103 - 44668223
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 240  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  44668103 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 44668202  T
Q  241 taaataagatcggagggagta 261  Q
    |||||| || |||||| ||||    
T  44668203 taaataggaccggaggtagta 44668223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 44955216 - 44955260
Alignment:
Q  141 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtat 185  Q
    |||||||||||||||  | ||||||||||||||||| ||||||||    
T  44955216 ggtcctatttataagagaattttaggtcaacaaaagttgatgtat 44955260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 30037 - 30130
Alignment:
Q  161 tttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcgga 254  Q
    |||| ||||| |||||||||||||| | | ||||||||| || |||||| ||| ||||||||| |   ||| |||| ||||||||| |||||||    
T  30037 tttatgtcaataaaagatgatgtatctagttaagaatttagaccaaatacatctacttttgtttatttaaatgtctattataaatatgatcgga 30130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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