View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965_high_1 (Length: 962)
Name: NF5965_high_1
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 669
Target Start/End: Complemental strand, 47680547 - 47679927
Alignment:
| Q |
19 |
gtaggatttaacaaccattgagnnnnnnnnctccaatgctagaactcaacacactttctattttactttatgtaggaccctcgtgtttcttctcttatca |
118 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47680547 |
gtaggatttaacaaccattgagttttttttctccaatgctagaactcaacacactttctattttactttatgtaggaccctcgtgtttcttctcttatca |
47680448 |
T |
|
| Q |
119 |
tccattatacctcttctctctccccttctcttactttttctgatgcagcaactgctagaacgtgttctaatgggagaactactgttctccacaatgtcat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47680447 |
tccattatacctcttctctctccccttctcttactttttctgatgcagcaactgctagaacgtgttctaatgggaga---actgttctccacaatgtcat |
47680351 |
T |
|
| Q |
219 |
cccgctcattgatctccaatgcataaaatataaaaatatgttcttgtttgctaagaacaccaagaaagaacagacgttggagatgtctaactggtaactt |
318 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47680350 |
ccagctcattgatctccaatgcataaaatataaaaatatgttcttgtttgctaagaacaccaagaaagaacagacgttggagatgtc------------- |
47680264 |
T |
|
| Q |
319 |
gaaaattggagtgtcagaaatttgcaggtatggacaccaccataatcttgaggagaacaactgcatttggtcgcgcagcatctactccagatgtcatttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47680263 |
gaaaattggagtgtcagaaatttgcaggtatggacaccaccataatcttgaggagaacaactgcatttggtcgcgcagcatctactccggatgtcatttt |
47680164 |
T |
|
| Q |
419 |
cgattgtagatgcatcatttacttatnnnnnnnnntatatctataaatggtgaattctttacattttcattctgtctaacgtgcttaggatactaaatta |
518 |
Q |
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| T |
47680163 |
cgattgtagatacatcatttacttataaaaaaa---atatctataaatggtgaattctttacattttcattctgtctaacgtgcttacgatagtaaatta |
47680067 |
T |
|
| Q |
519 |
caaaattgcatcacggatatattccggataatgtgataggtaatagatatataaatagctgggttatttaaaaacatagatatataattggaatgtgctt |
618 |
Q |
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| T |
47680066 |
caaaattgcatca-----------cggataatgtgataggtaatagatatataaatagctgggttatttaaaaacatagatatataattggaatgtgctt |
47679978 |
T |
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| Q |
619 |
gtgagcaaattactaaactgtatcacaaatatatgtaatcggggccttatt |
669 |
Q |
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| T |
47679977 |
gtgagcaaattactaaactgtatcacaaatatatgtaatcggggctttatt |
47679927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 736 - 962
Target Start/End: Complemental strand, 47679860 - 47679640
Alignment:
| Q |
736 |
tgttacagaatctgaaacaataatggataaaaatccccacccataagaaagacaaaatttaatgtaatataaaagattatcacaatcgtttcattttcat |
835 |
Q |
| |
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||||||||||| ||||||| ||| || | |||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
47679860 |
tgttacagaatttgaaacagtaaaggcttaaaatcccaacccaaaagaaagacaaaatttaattgaatataaaagattagcacaatcgtttcat------ |
47679767 |
T |
|
| Q |
836 |
ccctgtatcatttatctatacctgaagacttacttgttgatccttgagtaatgtgacttcctgatcctgaatcacttgactttgtgggcacagaatattg |
935 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47679766 |
ccgtgtatcattgatctatacctgaagacttacttgttgatccttgagtaatttgacttcctgatcctgaatcacttgactttgtgggcacagaatattg |
47679667 |
T |
|
| Q |
936 |
ttcatttaatggtatagataatgccct |
962 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
47679666 |
ttcatttaatggtatagataatgccct |
47679640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 122 - 291
Target Start/End: Complemental strand, 31704889 - 31704722
Alignment:
| Q |
122 |
attatacctcttctctctccccttctcttactttttctgatgcagcaactgctagaacgtgttctaatgggagaactactgttctccacaatgtcatccc |
221 |
Q |
| |
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|||||| |||||||||||| | || |||||| |||||||||||||| ||||||||||||||||| | | | ||| ||| ||||||||| |||||||| |
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| T |
31704889 |
attatatctcttctctctctcattttcttacgttttctgatgcagccactgctagaacgtgttccacttagggaa--actattctccacagtgtcatcca |
31704792 |
T |
|
| Q |
222 |
gctcattgatctccaatgcataaaatataaaaatatgttcttgtttgctaagaacaccaagaaagaacag |
291 |
Q |
| |
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||||| ||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||| |
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| T |
31704791 |
gctcaacgatctccaatgcatacaacataaaaatatgttcttgtttgctaagaatactaagaaagaacag |
31704722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 473 - 652
Target Start/End: Complemental strand, 47691786 - 47691597
Alignment:
| Q |
473 |
ttctttacattttcattctgtctaacgtgcttaggatactaaattacaaaattgcatcacggatatattccggataatgtgataggtaatagatatataa |
572 |
Q |
| |
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||||||| || ||| |||||||||||||||||| |||| ||||| ||||||||||| ||| | |||| ||||||||||||||||||||||||| ||| |
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| T |
47691786 |
ttctttaaatattctttctgtctaacgtgcttacgatagtaaatcacaaaattgcacgacgaacatatcatggataatgtgataggtaatagatatgtaa |
47691687 |
T |
|
| Q |
573 |
atagctgggttatttaaaaacata--------gatatataattggaatgtgcttgtgagcaaa--ttactaaactgtatcacaaatatat |
652 |
Q |
| |
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||| |||||||| ||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
47691686 |
ataattgggttatataaaaccatatgatatatgatatataattggaatacgcttgtgagcaaattttactaaactgtatcacaaatatat |
47691597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 780 - 962
Target Start/End: Complemental strand, 47691478 - 47691299
Alignment:
| Q |
780 |
aagaaagacaaaatttaatgtaatataaaagattatcacaatcgtttcattttcatccctgtatcatttatctatacctgaagacttacttgttgatcct |
879 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| |||||||| |||||| | | | | ||| ||| |||| || | || |||||||||||||||||| |
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| T |
47691478 |
aagaaagacaaaattcaatcaaatataaaagattttcacaatcacttcattct--tgcat-tattattgatctgtaaccgaggacttacttgttgatcct |
47691382 |
T |
|
| Q |
880 |
tgagtaatgtgacttcctgatcctgaatcacttgactttgtgggcacagaatattgttcatttaatggtatagataatgccct |
962 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||||||||| | |||||||| ||| |||||| ||||||||||||||| |
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| T |
47691381 |
tgagtaaattgacttcctgatcctgaatcagttgactttgtgggacctgaatattgctcacttaatgatatagataatgccct |
47691299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 8e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 49 - 303
Target Start/End: Original strand, 26453292 - 26453552
Alignment:
| Q |
49 |
ctccaatgctagaactcaacacactttctattttactttatgtaggaccctcgtgtttcttctcttatcatccattatacctcttctctctccccttctc |
148 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||| | |||||||||| || |||| ||||||||||||||||| ||| || |
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| T |
26453292 |
ctccaatgctagaactcaacacacttcctattttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctctctgcttttc |
26453391 |
T |
|
| Q |
149 |
t-----------tactttttctgatgcagcaactgctagaacgtgttctaatgggagaactactgttctccacaatgtcatcccgctcattgatctccaa |
237 |
Q |
| |
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| |||||||||| |||||| | ||||||||| ||||||| ||||||| | ||||||||||| ||||||| |||| ||||||||||| |
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| T |
26453392 |
ttaccttttctgtactttttctaatgcagtcagtgctagaacatgttctagtgggaga---attgttctccacagggtcatccagctcgttgatctccaa |
26453488 |
T |
|
| Q |
238 |
tgcataaaatataaaaatatgttcttgtttgctaagaacaccaagaaagaacagacgttggagatg |
303 |
Q |
| |
|
| ||||||| ||||||||||||||| ||||||||||| || | ||||||| || ||||||||||| |
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|
| T |
26453489 |
tacataaaacataaaaatatgttct--tttgctaagaaaactaggaaagaataggcgttggagatg |
26453552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 155 - 293
Target Start/End: Complemental strand, 33948501 - 33948366
Alignment:
| Q |
155 |
tttctgatgcagcaactgctagaacgtgttctaatgggagaactactgttctccacaatgtcatcccgctcattgatctccaatgcataaaatataaaaa |
254 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| ||| | ||||| ||||||||| |||||||| |||||||||||||||| |||| || ||||||| |
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| T |
33948501 |
tttctgatgcagccactgctataacgtgttctagtggaataacta---ttctccacagtgtcatccacctcattgatctccaatacatagaacataaaaa |
33948405 |
T |
|
| Q |
255 |
tatgttcttgtttgctaagaacaccaagaaagaacagac |
293 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
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|
| T |
33948404 |
tatgttcttgtttgctaagaacactaagaaagaacagac |
33948366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 223 - 302
Target Start/End: Original strand, 11727323 - 11727402
Alignment:
| Q |
223 |
ctcattgatctccaatgcataaaatataaaaatatgttcttgtttgctaagaacaccaagaaagaacagacgttggagat |
302 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| | |||||||| |||||||||| |
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|
| T |
11727323 |
ctcattgatctccaatgcatataacataaaaatatgttcttgattgctaagaacactagaaaagaacatgcgttggagat |
11727402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 290
Target Start/End: Original strand, 2210309 - 2210424
Alignment:
| Q |
172 |
gctagaacgtgttctaatgggagaactactgttctccacaatgtcatcccgctcattgatctccaatgcataaaatataaaaatatgttcttgtttgcta |
271 |
Q |
| |
|
|||| ||||||||||| |||||||||| |||||| ||| |||||||| || |||||||||||||||||| || |||| | |||||||||| | ||| |
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|
| T |
2210309 |
gctaaaacgtgttctagtgggagaact---gttctctacagtgtcatccaccttattgatctccaatgcatacaacataagcacatgttcttgtattcta |
2210405 |
T |
|
| Q |
272 |
agaacaccaagaaagaaca |
290 |
Q |
| |
|
||||||| |||||| |||| |
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|
| T |
2210406 |
agaacactaagaaataaca |
2210424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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