View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5965_high_11 (Length: 341)
Name: NF5965_high_11
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 34187522 - 34187247
Alignment:
| Q |
1 |
gcagagatctttggtcctcttgatagtttatcagccacctccattgtaaaaattacaagaattagtgtaatgatcacgtaattaaacaaattaaggagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34187522 |
gcagagatctttggtcctcttgatagtttatcagccaccttcattgtaaaaattacaagaattagtgtaatgatcacgtaatcaaacaaattaaggagca |
34187423 |
T |
|
| Q |
101 |
aaatttggttcgtatataaagaatgagaaatttcaacaaaaacaacttactgcacgtgcttgctctcttccaacttcattcaattcaacatccaagtgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34187422 |
aaatttggttcgtatataaagaatgagaaatttcaacaaaaacaacttactgcacgtgcttgctctcttccaacttcattcaattcaacatccaagtgtc |
34187323 |
T |
|
| Q |
201 |
cctgttnnnnnnnnnnnnnnnnnnnnnnaatttttaattaatattggacgtacacaaatgaattacaagaattctt |
276 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34187322 |
cctgtttatatatacaagtatatatatgaatttttaattaatattggacgtacacaaatgaattacaagaattctt |
34187247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 34187235 - 34187202
Alignment:
| Q |
292 |
gaattataagaaaaaatatatttgtattagaaat |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34187235 |
gaattataagaaaaaatatatttgtattagaaat |
34187202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 34194539 - 34194487
Alignment:
| Q |
142 |
acaacttactgcacgtgcttgctctcttccaacttcattcaattcaacatcca |
194 |
Q |
| |
|
|||||||||| || |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
34194539 |
acaacttacttcagctgcttgctgtcttccagtttcattcaattcaacatcca |
34194487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University