View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5965_high_2 (Length: 674)

Name: NF5965_high_2
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5965_high_2
NF5965_high_2
[»] chr1 (6 HSPs)
chr1 (1-658)||(47678517-47679174)
chr1 (153-658)||(47689803-47690306)
chr1 (264-397)||(6497812-6497945)
chr1 (264-397)||(6510766-6510899)
chr1 (558-655)||(6511030-6511127)
chr1 (223-348)||(6525264-6525389)
[»] chr5 (4 HSPs)
chr5 (540-655)||(27369133-27369248)
chr5 (296-393)||(28854730-28854827)
chr5 (264-382)||(27368689-27368807)
chr5 (284-393)||(28829057-28829166)
[»] scaffold0341 (2 HSPs)
scaffold0341 (264-397)||(12446-12579)
scaffold0341 (558-655)||(12711-12808)
[»] chr4 (2 HSPs)
chr4 (240-343)||(31697104-31697207)
chr4 (255-312)||(14519938-14519995)
[»] chr2 (2 HSPs)
chr2 (255-312)||(2698519-2698576)
chr2 (320-361)||(34218965-34219006)


Alignment Details
Target: chr1 (Bit Score: 630; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Complemental strand, 47679174 - 47678517
Alignment:
Q  1 taatgtactccggagccatgtatccactgtatcacaaaataattatgctcaatcattagatatgtacgacaatcgatcttcgatgaccgatcattttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||    
T  47679174 taatgtactccggagccatgtatccactgtatcacaaaacaattatgctcaatcattagatatgaacgacaatcgatcttcgatgaccaatcattttgat 47679075  T
Q  101 tttccacgttttttgttataaaattcttatttggaaatgatgaatatctcattagttcaagcatttccttaatacttacactgttccaacaacggtcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47679074 tttccacgttttttgttataaaattcttatttggaaatgatgaatatctcattagttcaagcatttccttaatacttacactgttccaacaacggtcttt 47678975  T
Q  201 gtcatgccatgagtttgagtggcatcaaacaatcttgcgattccaaagtctgtaatttttgggttcatctcttcatctagcaaaatgttacttgttttga 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678974 gtcatgccatgagtttgattggcatcaaacaatcttgcgattccaaaatctgtaatttttgggttcatctcttcatctagcaaaatgttacttgttttga 47678875  T
Q  301 gatcacgatgaacaatttgtaatcgagaatcttcatgaagataaagaaggccacgtgcaatatcttttatgattttgaagcgtctttcccaatttaaatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678874 gatcacgatgaacaatttgtaatcgagaatcttcatgaagataaagaaggccacgtgcaatatcttttatgattttgaagcgtctttcccaatttaaatt 47678775  T
Q  401 tgcacgcttgattggatctacataattagccaagccaaaattttaaagatataatatttataacttaataagttgttaaacatatatatttcattatttc 500  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678774 tgcacgcttgattggatctgcataattagccaagccaaaattttaaagatataatatttataacttaataagttgttaaacatatatatttcattatttc 47678675  T
Q  501 atcatagaaatgtaaaggtaaggttggagataatattgcaacttaccaaatatgatataatcaagacttttattggggacaaactcatatatcagtagcc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678674 atcatagaaatgtaaaggtaaggttggagataatattgcaacttaccaaatatgatataatcaagacttttattggggacaaactcatatatcagtagcc 47678575  T
Q  601 tttcttttctttgtaagcagaaacctaatagcttaactaaatttcgatgttgaagctt 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678574 tttcttttctttgtaagcagaaacctaatagcttaactaaatttcgatgttgaagctt 47678517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 153 - 658
Target Start/End: Complemental strand, 47690306 - 47689803
Alignment:
Q  153 tagttcaagcatttccttaatacttacactgttccaacaacggtctttgtcatgccatgagtttgagtggcatcaaacaatcttgcgattccaaagtctg 252  Q
    |||||| |||||||| | | |||||||   ||||||| ||||||  |||||||||||||||||||| |||||||||||||| |||| || ||||| ||||    
T  47690306 tagttctagcatttcttaagtacttactaagttccaataacggtgcttgtcatgccatgagtttgattggcatcaaacaattttgcaatgccaaaatctg 47690207  T
Q  253 taatttttgggttcatctcttcatctagcaaaatgttacttgttttgagatcacgatgaacaatttgtaatcgagaatcttcatgaagataaagaaggcc 352  Q
    |||||||||| |||| ||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||    
T  47690206 taatttttggattcagctcgtcatctagtaaaatattacttgttttgagatcacggtgaacaatttgtaatcgagaatcttcgtgaagataaagaagacc 47690107  T
Q  353 acgtgcaatatcttttatgattttgaagcgtctttcccaatttaaatttgcacgcttgattggatctacataattagccaagccaaaattttaaagatat 452  Q
    ||| |||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  47690106 acgggcaatatcttttataattttgtagcgtctttcccaattcaaatctgcacgcttgattggatctacataattacccaagccaaaattataaagatat 47690007  T
Q  453 aatatttataacttaataagttgttaaacatatatatttcattatttcatcatagaaatgtaaaggtaaggttggagataatattgcaacttaccaaata 552  Q
    ||| ||||||| |||| ||| ||||  ||  |||||| || || ||| |||||||||| | |||||||||||   ||  |||||||||||||||||||||    
T  47690006 aatttttataatttaaaaaggtgttcgac--atatatctctttcttttatcatagaaaagcaaaggtaaggtcaaaggaaatattgcaacttaccaaata 47689909  T
Q  553 tgatataatcaagacttttattggggacaaactcatatatcagtagcctttcttttctttgtaagcagaaacctaatagcttaactaaatttcgatgttg 652  Q
    |||||||||||||||||||||||| |||||||||||| || ||||| |||||| || ||||||| |||||||||| ||| ||||||||||||||||||||    
T  47689908 tgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatttcgatgttg 47689809  T
Q  653 aagctt 658  Q
    ||||||    
T  47689808 aagctt 47689803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 264 - 397
Target Start/End: Original strand, 6497812 - 6497945
Alignment:
Q  264 ttcatctcttcatctagcaaaatgttacttgttttgagatcacgatgaacaatttgtaatcgagaatcttcatgaagataaagaaggccacgtgcaatat 363  Q
    ||||| ||||||||||  | ||||||||||| ||||||||||||||||| |||  | | ||||||||| || ||||| ||||||| ||| || ||||||     
T  6497812 ttcatttcttcatctaagagaatgttacttgctttgagatcacgatgaataatgcgcagtcgagaatcctcgtgaaggtaaagaatgcctcgagcaatac 6497911  T
Q  364 cttttatgattttgaagcgtctttcccaatttaa 397  Q
    ||   ||||||||| ||||  |||||||||||||    
T  6497912 ctaaaatgattttgtagcgcatttcccaatttaa 6497945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 397
Target Start/End: Original strand, 6510766 - 6510899
Alignment:
Q  264 ttcatctcttcatctagcaaaatgttacttgttttgagatcacgatgaacaatttgtaatcgagaatcttcatgaagataaagaaggccacgtgcaatat 363  Q
    |||||||||||||| |  | ||| || |||| ||||||||||||||||| ||   ||| ||||||||| || ||||| ||||||| ||| || ||||||     
T  6510766 ttcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggtaaagaatgcctcgagcaatac 6510865  T
Q  364 cttttatgattttgaagcgtctttcccaatttaa 397  Q
    ||   ||||||||| |||| ||| ||||||||||    
T  6510866 ctaaaatgattttgtagcgccttccccaatttaa 6510899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 655
Target Start/End: Original strand, 6511030 - 6511127
Alignment:
Q  558 taatcaagacttttattggggacaaactcatatatcagtagcctttcttttctttgtaagcagaaacctaatagcttaactaaatttcgatgttgaag 655  Q
    |||||||||||||||||  | |||||||||||||| ||||| |||||| ||| || || ||||||||| | ||   | ||||||||||| ||||||||    
T  6511030 taatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaag 6511127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 348
Target Start/End: Complemental strand, 6525389 - 6525264
Alignment:
Q  223 catcaaacaatcttgcgattccaaagtctgtaatttttgggttcatctcttcatctagcaaaatgttacttgttttgagatcacgatgaacaatttgtaa 322  Q
    ||||||||| ||| || || ||||| ||||  || || || ||||||||||||||||  | ||| || |||| ||||||||||||||||| |||  | |     
T  6525389 catcaaacagtctagccatgccaaaatctgctatcttaggattcatctcttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcag 6525290  T
Q  323 tcgagaatcttcatgaagataaagaa 348  Q
     |||||||| |||||||| |||||||    
T  6525289 ccgagaatcctcatgaaggtaaagaa 6525264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 540 - 655
Target Start/End: Original strand, 27369133 - 27369248
Alignment:
Q  540 aacttaccaaatatgatataatcaagacttttattggggacaaactcatatatcagtagcctttcttttctttgtaagcagaaacctaatagcttaacta 639  Q
    ||||||||||||||||  ||||||||||||||||| |  ||||| ||||| || ||||| |||||| | | || ||  |||||||| | |||| ||||||    
T  27369133 aacttaccaaatatgaagtaatcaagacttttatttgaaacaaattcataaataagtagtctttctctcccttctagacagaaaccaagtagcctaacta 27369232  T
Q  640 aatttcgatgttgaag 655  Q
     |||||||||||||||    
T  27369233 gatttcgatgttgaag 27369248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 393
Target Start/End: Original strand, 28854730 - 28854827
Alignment:
Q  296 tttgagatcacgatgaacaatttgtaatcgagaatcttcatgaagataaagaaggccacgtgcaatatcttttatgattttgaagcgtctttcccaat 393  Q
    |||||||||||| || | |||  ||| ||||||||| ||||||||||| ||||  || || |||||| |||| ||||||||| ||||| |||||||||    
T  28854730 tttgagatcacggtgtataatgcgtagtcgagaatcctcatgaagatagagaacacctcgagcaatacctttaatgattttgtagcgtttttcccaat 28854827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 382
Target Start/End: Original strand, 27368689 - 27368807
Alignment:
Q  264 ttcatctcttcatctagcaaaatgttacttgttttgagatcacgatgaacaatttgtaatcgagaatcttcatgaagataaagaaggccacgtgcaatat 363  Q
    ||||||||||| ||||  | ||| || |||| |||||||||||| || | |||  | || |||||||| || |||||||||||||| || || ||||||     
T  27368689 ttcatctcttcgtctaaaagaatattgcttgctttgagatcacggtgtataatgcgcaagcgagaatcctcgtgaagataaagaagacctcgagcaatac 27368788  T
Q  364 cttttatgattttgaagcg 382  Q
    |||||||||| ||| ||||    
T  27368789 cttttatgatattgtagcg 27368807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 28829057 - 28829166
Alignment:
Q  284 aatgttacttgttttgagatcacgatgaacaatttgtaatcgagaatcttcatgaagataaagaaggccacgtgcaatatcttttatgattttgaagcgt 383  Q
    |||||| |||| ||| |||||||| || | |||  ||| ||||||||||||||||||||||||||  || || | |||| |||  ||||||||| ||||     
T  28829057 aatgttgcttgctttaagatcacggtgtataatgcgtagtcgagaatcttcatgaagataaagaacacctcgagtaataccttgaatgattttgtagcgc 28829156  T
Q  384 ctttcccaat 393  Q
     |||||||||    
T  28829157 ttttcccaat 28829166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 397
Target Start/End: Original strand, 12446 - 12579
Alignment:
Q  264 ttcatctcttcatctagcaaaatgttacttgttttgagatcacgatgaacaatttgtaatcgagaatcttcatgaagataaagaaggccacgtgcaatat 363  Q
    |||||||||||||| |  | ||| || |||| ||||||||||||||||| ||   ||| ||||||||| || ||||| ||||||| ||| || ||||||     
T  12446 ttcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggtaaagaatgcctcgagcaatac 12545  T
Q  364 cttttatgattttgaagcgtctttcccaatttaa 397  Q
    ||   ||||||||| |||| ||| ||||||||||    
T  12546 ctaaaatgattttgtagcgccttccccaatttaa 12579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 655
Target Start/End: Original strand, 12711 - 12808
Alignment:
Q  558 taatcaagacttttattggggacaaactcatatatcagtagcctttcttttctttgtaagcagaaacctaatagcttaactaaatttcgatgttgaag 655  Q
    |||||||||||||||||  | |||||||||||||| ||||| |||||| ||| || || ||||||||| | ||   | ||||||||||| ||||||||    
T  12711 taatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaag 12808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 343
Target Start/End: Complemental strand, 31697207 - 31697104
Alignment:
Q  240 attccaaagtctgtaatttttgggttcatctcttcatctagcaaaatgttacttgttttgagatcacgatgaacaatttgtaatcgagaatcttcatgaa 339  Q
    |||||||| ||||  |||||||| |||| ||  ||||| | ||| | |||||||| ||||||||| | ||||| ||||  |||||||||||||| |||||    
T  31697207 attccaaaatctgatatttttggattcaacttgtcatccaacaatacgttacttgctttgagatctctatgaataattcttaatcgagaatcttgatgaa 31697108  T
Q  340 gata 343  Q
    ||||    
T  31697107 gata 31697104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 14519938 - 14519995
Alignment:
Q  255 atttttgggttcatctcttcatctagcaaaatgttacttgttttgagatcacgatgaa 312  Q
    |||||||| ||||| | |||||||| |||||||||||||| ||| ||||| |||||||    
T  14519938 atttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaa 14519995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 2698519 - 2698576
Alignment:
Q  255 atttttgggttcatctcttcatctagcaaaatgttacttgttttgagatcacgatgaa 312  Q
    |||||||| ||||| | |||||||| |||||||||||||| ||| ||||| |||||||    
T  2698519 atttttggattcatgttttcatctaacaaaatgttacttgcttttagatctcgatgaa 2698576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 34219006 - 34218965
Alignment:
Q  320 taatcgagaatcttcatgaagataaagaaggccacgtgcaat 361  Q
    ||||| ||||||||||||||||||||||||||| || |||||    
T  34219006 taatctagaatcttcatgaagataaagaaggcctcgagcaat 34218965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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