View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965_high_21 (Length: 270)
Name: NF5965_high_21
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 46910597 - 46910334
Alignment:
| Q |
7 |
atactgttggtgttataggaggagtatcagttctatcaactcttgttttcttggaaaagctagcttgttggagttcaagaaacggtaaagaatgtccacc |
106 |
Q |
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| T |
46910597 |
atactattggtgttataggaggagtatcagttctatcaactcttgttttcttggaaaagctagcttgttggagttcaagaaacggtaaagaatgtccacc |
46910498 |
T |
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| Q |
107 |
ttttgttgtctgcagtgatcctgtgttaagcaaggcgctttcattacgtggttcttttccttctacgagaaccagaatagatcacatcgaattgaatcag |
206 |
Q |
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| T |
46910497 |
ttttgttgtctgcagtgatcctgtgttaagcaaggcgctttcattacgtggttcttttccttctacgagaaccagaatagatcacatcgaattgaatcag |
46910398 |
T |
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| Q |
207 |
gagctgatgattcaaaatttgcggcacaagatgaacgttcttcagcaatctggagctcgcggtc |
270 |
Q |
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| T |
46910397 |
gagctgatgattcagaatttgcggcacaagataaacgttcttcagcaatctggagctcgcggtc |
46910334 |
T |
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