View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965_high_24 (Length: 256)
Name: NF5965_high_24
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 41863061 - 41862825
Alignment:
| Q |
1 |
ccaagacccatccaataagccaatcaatgtcactcctgtgattgcatatcagaagtgcattttctttacctgaaattttcaccagnnnnnnntgcaaatt |
100 |
Q |
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| T |
41863061 |
ccaagacccatccaataagccaatcaatgtcactcctgtgattgcatatcagaagtgcattttctttacctgaaattttcaccagaaaaaa-tgcaaatt |
41862963 |
T |
|
| Q |
101 |
tgtgagagatctttttatactagtttattgttagcaaataatattaagaactttataaaccatgttaacttacccattaattgaaatgtttctgaatctg |
200 |
Q |
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||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41862962 |
tgtgagagatcctgttatactagtttatttttagcaaataatattaagaactttataaaccatgttaactaacccattaattgaaatgtttctgaatctg |
41862863 |
T |
|
| Q |
201 |
cgtacagctcgacctgcaacccgaatactcgacaaatt |
238 |
Q |
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| T |
41862862 |
cgtacagctcgacctgcaacccaaatactcgacaaatt |
41862825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 36553008 - 36552933
Alignment:
| Q |
6 |
acccatccaataagccaatcaatgtcactcctgtgattgcatatcagaagtgcattttctttacctgaaattttca |
81 |
Q |
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| T |
36553008 |
acccatccaacaagccaatcaatatcacttctgtgattgcatatgacaagtgcatgttctttacctgaaaatttca |
36552933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 42122143 - 42122212
Alignment:
| Q |
3 |
aagacccatccaataagccaatcaatgtcactcctgtgattgcatatcagaagtgca-ttttctttacct |
71 |
Q |
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|||||||||||||||||||||||||| |||| | || | |||||||||||||||||| |||||||||||| |
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| T |
42122143 |
aagacccatccaataagccaatcaatatcacacttgaggttgcatatcagaagtgcatttttctttacct |
42122212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 21627595 - 21627636
Alignment:
| Q |
8 |
ccatccaataagccaatcaatgtcactcctgtgattgcatat |
49 |
Q |
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|||||||| |||||||||||||||||| ||||||||| |||| |
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| T |
21627595 |
ccatccaacaagccaatcaatgtcacttctgtgattggatat |
21627636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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