View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965_high_4 (Length: 500)
Name: NF5965_high_4
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_high_4 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Complemental strand, 28673381 - 28672898
Alignment:
| Q |
17 |
atatttgatttgatgcaaaatacaaacatcataagagggaatgatttttccacactttcacatttctnnnnnnnctacacctgatttcataagtgaactt |
116 |
Q |
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| T |
28673381 |
atatttgatttgatgcaaaataccaacatcataagagggaatgatttttccacactttcacatttctaaaaaaactacacctgatatcataagtgaactt |
28673282 |
T |
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| Q |
117 |
tcacatgatataatttatctggttatcatttctcttagtgcataatgtctaaaattgtatcaaagatcgtatacatcgtacatgtcatataaaaattgaa |
216 |
Q |
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| T |
28673281 |
tcacatgatataatttatctggttatcatttctcttagtgcataatgtctaaaatcgtatcaaagatcgtatacatcgtacatgtcatataaaaattgaa |
28673182 |
T |
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| Q |
217 |
tattgactatgatcggtttcacnnnnnnnctttctacagattgtgagtaatgataagttcacaagtgttcaacacagagttttagcaaaacatgttggcc |
316 |
Q |
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| T |
28673181 |
tattgactatgatcggtttcactttttttctttctacagattgtgagtaatgataagttcacaagtgttcaacacagagttttagcaaaacatgctggcc |
28673082 |
T |
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| Q |
317 |
caagaatttcaatcgcatccctttttagagcacatgaaaccgagggaatgccaaaaatgattggtcaaatcaaggaactgttatctaaagaaaatctacc |
416 |
Q |
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| T |
28673081 |
caagaatttcaatcgcatccctttttagagcacatgaatccgagggaatgccaaaagtgattggtccaatcaaggaactgttatctaaagaaaatctacc |
28672982 |
T |
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| Q |
417 |
aatatatagagagacttctttgaaagagttcttggcacatcgttttacaaacggcattggattttctgcactttccaccaacag |
500 |
Q |
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| T |
28672981 |
aatatatagagacacttctttgaaagagttcttggcacatcgttttacaaacggcattggattttctgcactttcaaccaacag |
28672898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 246 - 488
Target Start/End: Complemental strand, 28670088 - 28669837
Alignment:
| Q |
246 |
ctttctacagattgtgagtaatgataagttcacaagtgttcaacacagagttttagcaaaacatgttggcccaagaatttcaatcgcatccctttttaga |
345 |
Q |
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|||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||| || |||||||| |
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| T |
28670088 |
ctttctccagcttgtgagtaatgacaagttcacaagtgttcaacacagagttttagcaaaccatgcaggcccaagaatttcagttgcaaccttttttaga |
28669989 |
T |
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| Q |
346 |
gc---acatga------aaccgagggaatgccaaaaatgattggtcaaatcaaggaactgttatctaaagaaaatctaccaatatatagagagacttctt |
436 |
Q |
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| T |
28669988 |
acacaacatgattactcacatgagggtatggaaaaagtgataggaccaataaaggaattgttatctaaagaaaatccaccaatatacagagatacttctt |
28669889 |
T |
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| Q |
437 |
tgaaagagttcttggcacatcgttttacaaacggcattggattttctgcact |
488 |
Q |
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| T |
28669888 |
tgaaagagtatttggcatatcgttttgcaaatggccttggagcttctgcact |
28669837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 246 - 450
Target Start/End: Complemental strand, 28639241 - 28639028
Alignment:
| Q |
246 |
ctttctacagattgtgagtaatgataagttcacaagtgttcaacacagagttttagcaaaacatgttggcccaagaatttcaatcgcatccctttttaga |
345 |
Q |
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|||||| ||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||||| || |||||||||||| | ||| |||| |||||| |
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| T |
28639241 |
ctttctgcagcttgtgagtaatgacaagtttaaaagtgttcaacacagagttttagcaaaacatgcaggtccaagaatttcagttgcaaccctctttaga |
28639142 |
T |
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| Q |
346 |
gc---acatga------aaccgagggaatgccaaaaatgattggtcaaatcaaggaactgttatctaaagaaaatctaccaatatatagagagacttctt |
436 |
Q |
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| T |
28639141 |
acacaacatgatcactctcctgagggcataccaaaattgattggaccaatcaaggaacttttatctgaagaaaacccaccaatatacaaagacacttctt |
28639042 |
T |
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| Q |
437 |
tgaaagagttcttg |
450 |
Q |
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| T |
28639041 |
tgaaagagtacttg |
28639028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 450
Target Start/End: Complemental strand, 28647983 - 28647770
Alignment:
| Q |
246 |
ctttctacagattgtgagtaatgataagttcacaagtgttcaacacagagttttagcaaaacatgttggcccaagaatttcaatcgcatccctttttaga |
345 |
Q |
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|||| ||||| ||||||||||||| |||| || ||||||||||||||||||||||||||| |||| ||||||||||||||| | ||| || |||||||| |
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| T |
28647983 |
ctttttacagcttgtgagtaatgacaagtacagaagtgttcaacacagagttttagcaaaccatgcaggcccaagaatttcagttgcaaccttttttaga |
28647884 |
T |
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| Q |
346 |
gc---acatga------aaccgagggaatgccaaaaatgattggtcaaatcaaggaactgttatctaaagaaaatctaccaatatatagagagacttctt |
436 |
Q |
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| |||||| | ||||| || |||||| ||||||| | |||||||||||| |||||||||||||| | |||||||| | ||| || |||| |
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| T |
28647883 |
acacaacatgatcattctcctgagggcataccaaaagtgattggaccaatcaaggaacttttatctaaagaaaaccctccaatatacaaagatacatctt |
28647784 |
T |
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| Q |
437 |
tgaaagagttcttg |
450 |
Q |
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| T |
28647783 |
tgaaagagtacttg |
28647770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 28690142 - 28690079
Alignment:
| Q |
264 |
taatgataagttcacaagtgttcaacacagagttttagcaaaacatgttggcccaagaatttca |
327 |
Q |
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| T |
28690142 |
taatgacaagttcattagcgttcaacacagagttttagcaaagcatataggtccaagaatttca |
28690079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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