View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965_high_7 (Length: 408)
Name: NF5965_high_7
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 390
Target Start/End: Original strand, 26121008 - 26121380
Alignment:
| Q |
13 |
aatatcatctcaaaaatagatatcccacaattctgaaagtctgaaacttaatatatgactatcaaattttgaaattttgagtcaactaaaatcattaaga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |
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| T |
26121008 |
aatatcatctcaaaaatagatatcccacaattctgaaagtctgaaacttaatatatgaccatcaaattctgaaattttgagtcaactaaaatcagtaaga |
26121107 |
T |
|
| Q |
113 |
tcaaacacagtatcacaatgaccacaaaacaaaaacagtaaagtcaaaagatataaattaaatttcgagtcaacataaatcatgcatgaccttaaaattt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
26121108 |
tcaaacacagtatcacaatgaccacaaaacaaaaacagtaaagtcaaaagatataaa-----tttcgagtcaacataaatcatgcaagaccttaaaattt |
26121202 |
T |
|
| Q |
213 |
aagagaagacccaaactttaaaaatgaaagatataatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaat |
312 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26121203 |
aagagaagacccaaatttaaaaaatgaaagatataatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaat |
26121302 |
T |
|
| Q |
313 |
agattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacagtggt |
390 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26121303 |
agattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacagtggt |
26121380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 121 - 386
Target Start/End: Original strand, 26128547 - 26128803
Alignment:
| Q |
121 |
agtatcacaatgaccacaaaacaaaaacagtaaagtcaaaagatataaattaaatttcgagtcaacataaatcatgcatgaccttaaaatttaagagaag |
220 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||| | | | |
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| T |
26128547 |
agtatcacaaagaccacaaaacaaaaacagtaaagtcaaaagatataaatt-----tggagtcaacaaaaatcatgcaagaccttaaaatttaaaa-atg |
26128640 |
T |
|
| Q |
221 |
acccaaactttaaaaatgaaagata--taatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattg |
318 |
Q |
| |
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| ||| || | |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
26128641 |
aaagaaa-----aacacgaaagataaataatctttgatgaaaaagaaacctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattg |
26128735 |
T |
|
| Q |
319 |
agaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacag |
386 |
Q |
| |
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|||| |||||||||||||||||||| |||||| || |||||||||| |||||||| | |||||||||| |
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|
| T |
26128736 |
agaagcaaagaagtcattaggaaaaaagaaaactatgatgcatccagtaagaactactatgattacag |
26128803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 246 - 390
Target Start/End: Original strand, 26111709 - 26111853
Alignment:
| Q |
246 |
taatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaata |
345 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26111709 |
taatctttgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaaaa |
26111808 |
T |
|
| Q |
346 |
gaaaagtaagatgcatccaataagaactccaatgattacagtggt |
390 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
26111809 |
gaaaactatgatgcatccaataagaactccaatgattacagtggt |
26111853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 253 - 390
Target Start/End: Original strand, 26085379 - 26085516
Alignment:
| Q |
253 |
tgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaatagaaaagt |
352 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26085379 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaatagaaaact |
26085478 |
T |
|
| Q |
353 |
aagatgcatccaataagaactccaatgattacagtggt |
390 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||| |
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| T |
26085479 |
atgatgcatccagcaagaactccaatgattacagtggt |
26085516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 246 - 390
Target Start/End: Original strand, 26056135 - 26056279
Alignment:
| Q |
246 |
taatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaata |
345 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| ||| ||| ||||| ||||||||||||| ||||||||||||||||| ||||||||| | |
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| T |
26056135 |
taatctttgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgatttgaggtaatagactgagaaacaaagaagtctttaggaaaaaa |
26056234 |
T |
|
| Q |
346 |
gaaaagtaagatgcatccaataagaactccaatgattacagtggt |
390 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||||||||| |
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|
| T |
26056235 |
gaaaactatgatgcatccagtaagaactccaatgattacagtggt |
26056279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 246 - 390
Target Start/End: Original strand, 26067797 - 26067941
Alignment:
| Q |
246 |
taatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaata |
345 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| ||| ||| ||||| ||||||||||||| ||||||||||||||||| ||||||||| | |
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| T |
26067797 |
taatctttgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgatttgaggtaatagactgagaaacaaagaagtctttaggaaaaaa |
26067896 |
T |
|
| Q |
346 |
gaaaagtaagatgcatccaataagaactccaatgattacagtggt |
390 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||||||||| |
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|
| T |
26067897 |
gaaaactatgatgcatccagtaagaactccaatgattacagtggt |
26067941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 179 - 378
Target Start/End: Original strand, 26038150 - 26038362
Alignment:
| Q |
179 |
gagtcaacataaatcatgcatgaccttaaaatttaagagaagacccaaactttaaaaatgaaaga-------------tataatctttgatgaaaatgaa |
265 |
Q |
| |
|
|||||||| |||||||||| || ||||||||| |||| |||||||||| || |||||||||||| || |||||||||||||||| || |
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|
| T |
26038150 |
gagtcaacgaaaatcatgcaagagcttaaaattcaagacaagacccaaaattcaaaaatgaaagaaaaacacaaaagctacaatctttgatgaaaataaa |
26038249 |
T |
|
| Q |
266 |
acctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaa |
365 |
Q |
| |
|
||||| || |||| |||| ||| || || | ||||| |||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |
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|
| T |
26038250 |
acctgggttttggatccaacaacagcgatgcgacgatttgatgtaatagattgagaaacaaagaagccattaggaaaaaagaaagctaagatgcatccaa |
26038349 |
T |
|
| Q |
366 |
taagaactccaat |
378 |
Q |
| |
|
||||||| ||||| |
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|
| T |
26038350 |
taagaacaccaat |
26038362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 26128426 - 26128522
Alignment:
| Q |
39 |
acaattctgaaagtctgaaacttaatatatgactatcaaattttgaaattttgagtcaactaaaatcattaagatcaaacacagtatcacaatgacc |
135 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||||||| |
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|
| T |
26128426 |
acaaatctgaaagtctgaagcttattatatgactatcaaattctgaaattttgagtcaactaaaatcagtaagatcaaacacaattccacaatgacc |
26128522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 26037964 - 26038046
Alignment:
| Q |
33 |
tatcccacaattctgaaagtctgaaacttaatat--atgactatcaaattttgaaattttgagtcaactaaaatcattaagat |
113 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||| |||||||||||||| | ||||||| ||||||| |||||||||||||| |
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|
| T |
26037964 |
tatcccacaattctaaaattcagaaacttaatatatatgactatcaaattctaaaattttcagtcaacgaaaatcattaagat |
26038046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 26065545 - 26065603
Alignment:
| Q |
316 |
ttgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactc |
374 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
26065545 |
ttgagaaacaaagaagtcattgggaaaaaagaaagctaagatgcatcctataagaactc |
26065603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 26056653 - 26056612
Alignment:
| Q |
302 |
attgaggtaatagattgagaaacaaagaagtcattaggaaaa |
343 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26056653 |
attgaggtaatagattgagaaacaaagatgtcattaggaaaa |
26056612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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