View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965_low_10 (Length: 342)
Name: NF5965_low_10
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 41798488 - 41798693
Alignment:
| Q |
16 |
atcaaatttaaattttttaaatgttcaaagttagtaccaattccacacgtttcaatcttcttattctacttcatcgtcnnnnnnnnattctctatttcct |
115 |
Q |
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| T |
41798488 |
atcaaatttaaattttttaaatgttcaaagttagtaccaattccacacgtttcaatcttcttattctacttcatcgtcttttttttattctttatttcct |
41798587 |
T |
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| Q |
116 |
cattcttgtatcatccctagagtgctcacaaggcagaaccatcaaattcacaannnnnnnacctttcaagaacaaatatttcgctatattctttcccagt |
215 |
Q |
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| T |
41798588 |
cattcttgtatcatccctagagtgctcgcaaggcagaaccatcaaattcacaa-ttttttacctttcaagaacaaatatttcgctatattctttcccagt |
41798686 |
T |
|
| Q |
216 |
ttgcttt |
222 |
Q |
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||||||| |
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| T |
41798687 |
ttgcttt |
41798693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 41799907 - 41799944
Alignment:
| Q |
249 |
atttttctataggttgctaatcgcttttgatcatttgt |
286 |
Q |
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| T |
41799907 |
atttttctataggttgctaatcgcttttgatcatttgt |
41799944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 254
Target Start/End: Original strand, 41798714 - 41798747
Alignment:
| Q |
221 |
ttcatcaaaatatctgttttatactgctattttt |
254 |
Q |
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| T |
41798714 |
ttcatcaaaatatctgttttatactgctattttt |
41798747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 3379949 - 3380124
Alignment:
| Q |
50 |
taccaattccacacgtttcaatcttcttattctacttcatcgtcnnnnnnnnatt-ctctat-ttcctcattcttgtatcatccctagagtgctcacaag |
147 |
Q |
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| T |
3379949 |
taccaattccacacgtttcaatcttcttattctacttcatcatcttttttttattattctatattcctcattcttctattatccctagagtgctcacaag |
3380048 |
T |
|
| Q |
148 |
gcagaaccatcaaattcacaannnnnnnacctttcaagaacaaatatttcgctatattctttcccagtttgctttcat |
225 |
Q |
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| T |
3380049 |
ccacaaccatcgaactcacaa--attttaccttccaagaacaaatattttgccatactctttcccagtttgctttcat |
3380124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 3380140 - 3380195
Alignment:
| Q |
221 |
ttcatcaaaatatctgttttatactgctatttttctataggttgctaatcgctttt |
276 |
Q |
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||||||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
3380140 |
ttcatcaaaatctttgttttataatgctatttttctatgggttgctaatcactttt |
3380195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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