View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5965_low_12 (Length: 334)

Name: NF5965_low_12
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5965_low_12
NF5965_low_12
[»] chr4 (6 HSPs)
chr4 (19-185)||(50375282-50375448)
chr4 (236-325)||(50375447-50375536)
chr4 (36-163)||(34791691-34791817)
chr4 (229-308)||(41751258-41751337)
chr4 (229-298)||(10185224-10185293)
chr4 (220-308)||(32818347-32818435)
[»] chr8 (5 HSPs)
chr8 (222-307)||(32736483-32736568)
chr8 (198-268)||(16972018-16972089)
chr8 (199-269)||(2764424-2764495)
chr8 (222-268)||(32927952-32927998)
chr8 (229-301)||(3206084-3206156)
[»] chr6 (5 HSPs)
chr6 (45-163)||(4073007-4073123)
chr6 (229-268)||(882746-882785)
chr6 (234-273)||(12766650-12766689)
chr6 (207-268)||(32888920-32888982)
chr6 (222-266)||(3482108-3482152)
[»] chr7 (3 HSPs)
chr7 (198-303)||(25156225-25156331)
chr7 (224-274)||(46344646-46344696)
chr7 (229-305)||(40561744-40561820)
[»] chr2 (6 HSPs)
chr2 (221-267)||(38074470-38074516)
chr2 (222-326)||(42740979-42741082)
chr2 (229-268)||(1976850-1976889)
chr2 (198-268)||(16518838-16518909)
chr2 (242-316)||(44439266-44439340)
chr2 (229-273)||(15220847-15220891)
[»] chr1 (7 HSPs)
chr1 (222-307)||(1514364-1514449)
chr1 (198-268)||(11817271-11817342)
chr1 (228-267)||(47053465-47053504)
chr1 (221-307)||(3416101-3416187)
chr1 (222-307)||(34721819-34721904)
chr1 (222-274)||(4458440-4458492)
chr1 (241-273)||(45557361-45557393)
[»] chr3 (5 HSPs)
chr3 (231-303)||(37335022-37335094)
chr3 (229-259)||(31130043-31130073)
chr3 (237-275)||(36302236-36302274)
chr3 (222-302)||(33791984-33792065)
chr3 (234-298)||(51285600-51285664)
[»] chr5 (1 HSPs)
chr5 (224-307)||(6951286-6951369)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 50375282 - 50375448
Alignment:
Q  19 gatacatctcaaacgtatcacaattgattttcattggctagtcaagctttgacctaccctatattttccttcaattccaaaaatgcaagttttcccttgc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50375282 gatacatctcaaacgtatcacaattgattttcattggctagtcaagctttgacctaccctatattttccttcaattccgaaaatgcaagttttcccttgc 50375381  T
Q  119 tttgcaaatacaacacgtcggcattgtaaaatttcacgaaggaaatctttggaatgtattgcaacac 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50375382 tttgcaaatacaacacgtcggcattgtaaaatttcacgaaggaaatctttggaatgtattgcaacac 50375448  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 50375447 - 50375536
Alignment:
Q  236 acattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactacaaattttcgcttcgagtataat 325  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  50375447 acattcatgtaaaagtgacttaaacaataaattcaagtgcaaaaataaattatagaataaaaaattacaaattttcgcttcgagtataat 50375536  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 34791817 - 34791691
Alignment:
Q  36 tcacaattgattttcattggctagtcaagctttgacctaccctatattttccttcaattccaaaaatgcaagttttcccttgctttgcaaatacaacacg 135  Q
    |||| ||| ||||||||||| ||||||| | |||||| |||| || ||| |||| || |||  || ||||||||||||||||||||||||||||||| ||    
T  34791817 tcacgatttattttcattggttagtcaatccttgacccaccc-atgtttcccttgaaatccggaattgcaagttttcccttgctttgcaaatacaactcg 34791719  T
Q  136 tcggcattgtaaaatttcacgaaggaaa 163  Q
      ||||| |  || ||||||||||||||    
T  34791718 caggcatcgagaagtttcacgaaggaaa 34791691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 41751258 - 41751337
Alignment:
Q  229 tttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactacaaatt 308  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||  | |||| |||| |||||| ||||  ||||||||    
T  41751258 tttgaatacattcatgtaaaactgaattaaacaataaatttaagtttaaaaatcaattctagaatcaaaatatacaaatt 41751337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 10185293 - 10185224
Alignment:
Q  229 tttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaa 298  Q
    |||| ||||||| |||||||||||||||||||||||||||  |||| | | || ||||||||||| ||||    
T  10185293 tttggatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaa 10185224  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 32818347 - 32818435
Alignment:
Q  220 atatttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactacaaatt 308  Q
    |||| ||| |||| |||||||||||||||||| |||| ||| |||||||   ||||| |||| |||| |||||| |||| |||||||||    
T  32818347 atatatgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaatt 32818435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 32736568 - 32736483
Alignment:
Q  222 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactacaaat 307  Q
    |||||||||||||||||||||||||||||||| || ||| |||||||   ||| | |||| ||||||| |||||||||||||||||    
T  32736568 atttgtatttgaatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaattttaaaataaaaaactacaaat 32736483  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 16972018 - 16972089
Alignment:
Q  198 ctaaaagtaagttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaatt 268  Q
    |||||||| ||||||||  ||||| |||||| ||||||||||||||||||||||||| || |||||||||||    
T  16972018 ctaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatt 16972089  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 2764424 - 2764495
Alignment:
Q  199 taaaagtaagttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaattc 269  Q
    ||||||||||||||| | ||| | |||| |||||| ||||||||| ||||||||||||| ||| ||||||||    
T  2764424 taaaagtaagttgaatataaagtgatttatatttggatacattcacgtaaaagtgagttgaaccataaattc 2764495  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 32927998 - 32927952
Alignment:
Q  222 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaatt 268  Q
    |||||| |||| ||||||||||||||||||||||| ||| |||||||    
T  32927998 atttgtgtttggatacattcatgtaaaagtgagttgaactataaatt 32927952  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 3206156 - 3206084
Alignment:
Q  229 tttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaact 301  Q
    |||||||||||| || ||||| | | |||||||||||||| ||||| | | || ||||||| |||||||||||    
T  3206156 tttgaatacatttatataaaaataaattaaacaataaatttaagtgtaaagatcaattttataataaaaaact 3206084  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 4073123 - 4073007
Alignment:
Q  45 attttcattggctagtcaagctttgacctaccctatattttccttcaattccaaaaatgcaagttttcccttgctttgcaaatacaacacgtcggcattg 144  Q
    ||||||||||| ||||||| | |||||| |||| || |||||||| || |  | || |||||||||||||||||||||||||||||||| || |||||||    
T  4073123 attttcattggatagtcaaaccttgacccaccc-atgttttcctttaaata-agaattgcaagttttcccttgctttgcaaatacaacatgttggcattg 4073026  T
Q  145 taaaatttcacgaaggaaa 163  Q
      || ||||||||||||||    
T  4073025 ggaagtttcacgaaggaaa 4073007  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 882785 - 882746
Alignment:
Q  229 tttgaatacattcatgtaaaagtgagttaaacaataaatt 268  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  882785 tttggatacattcatgcaaaagtgagttaaacaataaatt 882746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 273
Target Start/End: Original strand, 12766650 - 12766689
Alignment:
Q  234 atacattcatgtaaaagtgagttaaacaataaattcaagt 273  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  12766650 atacattcatgcaaaagtgagttaaacaataaatttaagt 12766689  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 32888920 - 32888982
Alignment:
Q  207 agttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaatt 268  Q
    ||||||||| ||||| |||| | |||||||| ||| ||||||||||||||| |||||||||||    
T  32888920 agttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgagttgaacaataaatt 32888982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 3482152 - 3482108
Alignment:
Q  222 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaa 266  Q
    |||||| ||||||||||||||||||||||| |||| ||| |||||    
T  3482152 atttgtgtttgaatacattcatgtaaaagtaagttgaactataaa 3482108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 25156331 - 25156225
Alignment:
Q  198 ctaaaagtaagttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaa 296  Q
    |||||| | ||||||||| ||||| |||||| ||||||||||||||| |||||||||||| |   || |||| | ||| | |||| |||| |||||||||    
T  25156331 ctaaaaatgagttgaagataaaatgatttgtgtttgaatacattcatataaaagtgagttgatttattaatttatgtgtaaaaatcaattctagaataaa 25156232  T
Q  297 aaactac 303  Q
    |||||||    
T  25156231 aaactac 25156225  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 46344696 - 46344646
Alignment:
Q  224 ttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtg 274  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||| |||||    
T  46344696 ttgtatttgaatacatttatgcaaaagtgaattaaacaataaatttaagtg 46344646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 40561744 - 40561820
Alignment:
Q  229 tttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactacaa 305  Q
    |||| ||||||||||||||||||||||| ||||||| |||  |||| | |||| |||| |||| | | |||||||||    
T  40561744 tttggatacattcatgtaaaagtgagttgaacaatatatttgagtgtataaattaattctagacttacaaactacaa 40561820  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 38074516 - 38074470
Alignment:
Q  221 tatttgtatttgaatacattcatgtaaaagtgagttaaacaataaat 267  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  38074516 tatttgtatttaaatacatttatgtaaaagtgagttgaacaataaat 38074470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 42741082 - 42740979
Alignment:
Q  222 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactacaaattttcgcttcgagta 321  Q
    |||||| |||||||||||| |||||||||||||||  ||| ||||||  |||| | |||| |||| |||||| |||| |||||||| || ||||| ||||    
T  42741082 atttgtgtttgaatacatt-atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagta 42740984  T
Q  322 taatc 326  Q
     ||||    
T  42740983 gaatc 42740979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 1976850 - 1976889
Alignment:
Q  229 tttgaatacattcatgtaaaagtgagttaaacaataaatt 268  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  1976850 tttggatacattcatgtaaaagtgagttcaacaataaatt 1976889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 16518909 - 16518838
Alignment:
Q  198 ctaaaagtaagttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaatt 268  Q
    |||||||| |||||| |  ||||| |||||| |||| ||||||||||||||||||||||| ||| |||||||    
T  16518909 ctaaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatt 16518838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 44439340 - 44439266
Alignment:
Q  242 atgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactacaaattttcgcttc 316  Q
    ||||||||||||||| |||||||||||  ||||   |||| ||||||||||| |||| || |||||||| |||||    
T  44439340 atgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttc 44439266  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 15220847 - 15220891
Alignment:
Q  229 tttgaatacattcatgtaaaagtgagttaaacaataaattcaagt 273  Q
    |||| |||||||||||| |||||||||| ||||||||||| ||||    
T  15220847 tttggatacattcatgttaaagtgagttgaacaataaattgaagt 15220891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 1514449 - 1514364
Alignment:
Q  222 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactacaaat 307  Q
    |||||| |||| |||||||||||||||| |||||| |||||||||||   ||| | |||| |||| || |||||||| ||||||||    
T  1514449 atttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaat 1514364  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 11817271 - 11817342
Alignment:
Q  198 ctaaaagtaagttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaatt 268  Q
    |||||||  ||||||||| ||||| |||| |||||||||||||| |||||||||| |||| ||| |||||||    
T  11817271 ctaaaagcgagttgaagataaaatgatttttatttgaatacattaatgtaaaagttagttgaactataaatt 11817342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 47053504 - 47053465
Alignment:
Q  228 atttgaatacattcatgtaaaagtgagttaaacaataaat 267  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  47053504 atttggatacattcatgtaaaagtgagttaaactataaat 47053465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 3416187 - 3416101
Alignment:
Q  221 tatttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactacaaat 307  Q
    ||||||| |||| |||||| ||| ||||| |||||||||| |||||||   ||| | |||| |||| || |||||||||||||||||    
T  3416187 tatttgtctttggatacatccatataaaattgagttaaactataaatttgtgtgtaaaaatcaattctaaaataaaaaactacaaat 3416101  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 34721819 - 34721904
Alignment:
Q  222 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactacaaat 307  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||||   |||   |||| |||| ||||||||||||| ||||||    
T  34721819 atttgtatttgaatacattgatgtaaaagtaagtcgaactataaatttgtgtgtgaaaatcaattatagaataaaaaacaacaaat 34721904  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 4458492 - 4458440
Alignment:
Q  222 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtg 274  Q
    |||| |||||| ||||||||| |||||||||| ||  ||||||||||||||||    
T  4458492 atttatatttggatacattcaggtaaaagtgaattgtacaataaattcaagtg 4458440  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 45557393 - 45557361
Alignment:
Q  241 catgtaaaagtgagttaaacaataaattcaagt 273  Q
    |||||||||||||||| ||||||||||||||||    
T  45557393 catgtaaaagtgagttgaacaataaattcaagt 45557361  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 37335022 - 37335094
Alignment:
Q  231 tgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactac 303  Q
    ||||||||||||| ||||| |||||| |||||| |||||||||| | |||| |||| |||||| |||| ||||    
T  37335022 tgaatacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaagctac 37335094  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 259
Target Start/End: Original strand, 31130043 - 31130073
Alignment:
Q  229 tttgaatacattcatgtaaaagtgagttaaa 259  Q
    |||||||||||||||||||||||||||||||    
T  31130043 tttgaatacattcatgtaaaagtgagttaaa 31130073  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 36302274 - 36302236
Alignment:
Q  237 cattcatgtaaaagtgagttaaacaataaattcaagtgc 275  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  36302274 cattcatgtaaaagtgagttgaacaataaatttaagtgc 36302236  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 33791984 - 33792065
Alignment:
Q  222 atttgtatttgaatacattcatgtaaaagtgag-ttaaacaataaattcaagtgcacaaataaattttagaataaaaaacta 302  Q
    |||||| |||| ||| ||||||||||||||||| |||||||||||||| | ||| | |||| |||| || ||| ||||||||    
T  33791984 atttgtgtttggatagattcatgtaaaagtgagtttaaacaataaatttatgtgtaaaaatcaattataaaatcaaaaacta 33792065  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 51285664 - 51285600
Alignment:
Q  234 atacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaa 298  Q
    ||||||||||||||||| | ||||||||| |||||  |||||| |||| |||| |||||| ||||    
T  51285664 atacattcatgtaaaagcgggttaaacaacaaatttgagtgcaaaaatcaattctagaatcaaaa 51285600  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 6951286 - 6951369
Alignment:
Q  224 ttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaactacaaat 307  Q
    ||||||||| ||| |||||||||||||||| || ||  ||||||| | ||| |||||| |||| |||||| |||| ||||||||    
T  6951286 ttgtatttggataaattcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaat 6951369  T

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