View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965_low_13 (Length: 332)
Name: NF5965_low_13
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 4047111 - 4046956
Alignment:
| Q |
9 |
agcagagaatgtattgactggtgaaaaagttgccatatatgtcattgattgccgttggaaagagaatacacaaatggaagaaaaaggtaccatgttattt |
108 |
Q |
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| T |
4047111 |
agcagagaatgtattgactggtgaaaaagttgccatatatctcattgattgccgttggaaagagaatacacaaatggaagaaaaaggtaccatgttattt |
4047012 |
T |
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| Q |
109 |
gtatgtcaacaattttcgagtatggtaactactccctccgatcttatttataaaag |
164 |
Q |
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| T |
4047011 |
gtatgtcaacaattttcgagtatggtaactactccctctgatcttatttataaaag |
4046956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 159 - 314
Target Start/End: Complemental strand, 4046885 - 4046730
Alignment:
| Q |
159 |
taaaagttccttataaataggacctgcgaatattattgtnnnnnnnttatgcatatgtccaaacatatttcataatcttagtgtcaattggttttgagaa |
258 |
Q |
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| T |
4046885 |
taaaaattccttataaataggatctgcgagtattattgtaaaaaaattatgcatatgtacaaacatatttcataatcttagtgtcaattagttttgagaa |
4046786 |
T |
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| Q |
259 |
gtaacattgtgatgtaccaatataatgaaatgtgattatactatttatgtatagtt |
314 |
Q |
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| T |
4046785 |
gtaacattgtgatgtaccaatataatgaaatgtgattatactatttatgtatagtt |
4046730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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