View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5965_low_15 (Length: 327)
Name: NF5965_low_15
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_low_15 |
 | |
|
| [»] chr5 (9 HSPs) |
| |
|
| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 12531330 - 12531656
Alignment:
| Q |
1 |
cggcaaccggtggtgtaaagaaaccacacagattccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattag |
100 |
Q |
| |
|
|||||||||| || || ||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||| || || |
|
|
| T |
12531330 |
cggcaaccggaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataag |
12531429 |
T |
|
| Q |
101 |
gaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgct |
200 |
Q |
| |
|
||| ||||||||||| || | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12531430 |
gaagcttccattccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgct |
12531529 |
T |
|
| Q |
201 |
gaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12531530 |
gaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaa |
12531629 |
T |
|
| Q |
301 |
tcagaggcgagagggcttagatttggt |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
12531630 |
tcagaggcgagagggcttagatttggt |
12531656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 12547289 - 12546963
Alignment:
| Q |
1 |
cggcaaccggtggtgtaaagaaaccacacagattccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattag |
100 |
Q |
| |
|
|||||||||| || || ||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||| || || |
|
|
| T |
12547289 |
cggcaaccggaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataag |
12547190 |
T |
|
| Q |
101 |
gaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgct |
200 |
Q |
| |
|
||| ||||||||||| || | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12547189 |
gaagcttccattccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgct |
12547090 |
T |
|
| Q |
201 |
gaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12547089 |
gaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctcgcagaa |
12546990 |
T |
|
| Q |
301 |
tcagaggcgagagggcttagatttggt |
327 |
Q |
| |
|
| ||||||||||| ||||||||||||| |
|
|
| T |
12546989 |
ttagaggcgagagagcttagatttggt |
12546963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 171 - 324
Target Start/End: Complemental strand, 9866777 - 9866624
Alignment:
| Q |
171 |
agtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatca |
270 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| || ||||| |||||||||||||| |||||||| | |
|
|
| T |
9866777 |
agtgatgtttctgctcttcaagaagctgctaaagactatcttgttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactatta |
9866678 |
T |
|
| Q |
271 |
tgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagattt |
324 |
Q |
| |
|
||||| |||| || ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
9866677 |
tgcctgaggacatccaactcgcttaaagaatcagaggccagagggcttagattt |
9866624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 325
Target Start/End: Original strand, 9894642 - 9894804
Alignment:
| Q |
162 |
ttccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagaggg |
261 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||| || |||||||| | ||||| |||||||||| ||||||||| | || || |||||||||||| | | |
|
|
| T |
9894642 |
ttccagagtagtgctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaagatactaatatttgcgctattcatgctaagtgag |
9894741 |
T |
|
| Q |
262 |
ttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttg |
325 |
Q |
| |
|
||||||| ||| | ||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9894742 |
ttactattatggc-aaggatattgaacttgctcgcagaatcagaggcgagagggcttagatttg |
9894804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 9869994 - 9870102
Alignment:
| Q |
176 |
tgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcct |
275 |
Q |
| |
|
||||| || |||||||||||||| |||||||||| |||||||||||||| | |||| |||||| || || |||||||||||||| |||||||| |||||| |
|
|
| T |
9869994 |
tgtttatggtcttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcct |
9870093 |
T |
|
| Q |
276 |
aaggatatt |
284 |
Q |
| |
|
||||||||| |
|
|
| T |
9870094 |
aaggatatt |
9870102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 12538673 - 12538760
Alignment:
| Q |
238 |
tctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttg |
325 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| | |||||||||| |||||| |||||||||| |||| ||||||||||| |
|
|
| T |
12538673 |
tctgtgctattcatgctaagagagttactatcatgcctaaaggtattcaactcactcgcataatcagaggcaagagtgcttagatttg |
12538760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 38735501 - 38735619
Alignment:
| Q |
147 |
aaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgcca |
246 |
Q |
| |
|
||||||||||| | ||||| |||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||| || ||| | | |
|
|
| T |
38735501 |
aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta |
38735600 |
T |
|
| Q |
247 |
ttcatgctaagagggttac |
265 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38735601 |
ttcatgctaagagggttac |
38735619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 9869870 - 9869961
Alignment:
| Q |
18 |
aagaaaccacacagattccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttcc |
109 |
Q |
| |
|
|||||||||||| | ||| ||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| || ||||| ||||| |
|
|
| T |
9869870 |
aagaaaccacactgtttctgtcatggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagcttctaataaggaagcttcc |
9869961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 296 - 327
Target Start/End: Original strand, 12537076 - 12537107
Alignment:
| Q |
296 |
cagaatcagaggcgagagggcttagatttggt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12537076 |
cagaatcagaggcgagagggcttagatttggt |
12537107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 3930251 - 3929931
Alignment:
| Q |
1 |
cggcaaccggtggtgtaaagaaaccacacagattccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
3930251 |
cggcaaccggtggtgtaaagaaaccacacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattag |
3930152 |
T |
|
| Q |
101 |
gaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
3930151 |
gaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgct |
3930052 |
T |
|
| Q |
201 |
gaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaa |
300 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||| || | |||| |
|
|
| T |
3930051 |
gaagcgtatcttgttggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgcaagaagaa |
3929952 |
T |
|
| Q |
301 |
tcagaggcgagagggcttaga |
321 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
3929951 |
tcagaggcgaaagggcttaga |
3929931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 21317412 - 21317700
Alignment:
| Q |
1 |
cggcaaccggtggtgtaaagaaaccacacagattccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattag |
100 |
Q |
| |
|
|||| ||||| || || ||||| |||||| | |||||||| ||||| || || |||||||||||||| ||||| |||||||||||||||||||| || || |
|
|
| T |
21317412 |
cggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataag |
21317511 |
T |
|
| Q |
101 |
gaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgct |
200 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
21317512 |
aaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggct |
21317611 |
T |
|
| Q |
201 |
gaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaact |
289 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
21317612 |
gaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaact |
21317700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 3928882 - 3928579
Alignment:
| Q |
18 |
aagaaaccacacagattccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaa |
117 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| ||| | ||||||||| | |||||||| |||| ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
3928882 |
aagaagccacacagattcagaccaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaa |
3928783 |
T |
|
| Q |
118 |
gattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttgg |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| |||||||| | ||| ||||||||||||||||||||| |||||||| | | ||||||| |
|
|
| T |
3928782 |
gattggttcatgaaatcgctcaggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtattgttgg |
3928683 |
T |
|
| Q |
218 |
tttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggct |
317 |
Q |
| |
|
||||||||| |||| ||||| ||||| |||||||||||||| |||||||| |||||||||||||| |||| || |||||||||| ||||||| ||| |
|
|
| T |
3928682 |
tttgtttgaagatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagct |
3928583 |
T |
|
| Q |
318 |
taga |
321 |
Q |
| |
|
|||| |
|
|
| T |
3928582 |
taga |
3928579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 21320195 - 21320239
Alignment:
| Q |
275 |
taaggatattcaactcgctcgcagaatcagaggcgagagggctta |
319 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||| ||||||||||| |
|
|
| T |
21320195 |
taaggatattcaacttgcttgcataatcagaggtgagagggctta |
21320239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 33 - 324
Target Start/End: Original strand, 13576218 - 13576509
Alignment:
| Q |
33 |
ttccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaa |
132 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
13576218 |
ttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggttcgagaaa |
13576317 |
T |
|
| Q |
133 |
tcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac |
232 |
Q |
| |
|
| ||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13576318 |
ttgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac |
13576417 |
T |
|
| Q |
233 |
taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagattt |
324 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||| ||||||||||||| |
|
|
| T |
13576418 |
gaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgcgagaagaatcagaggcgaaagggcttagattt |
13576509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 42 - 296
Target Start/End: Complemental strand, 34571695 - 34571441
Alignment:
| Q |
42 |
ggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcagg |
141 |
Q |
| |
|
||||||||||| |||||||| || || |||||||||||||| || || ||| | || | |||||||||||||| | | ||||||||||| ||||||| |
|
|
| T |
34571695 |
ggaacagttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagg |
34571596 |
T |
|
| Q |
142 |
atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctg |
241 |
Q |
| |
|
||||||| || ||| | |||||||| ||| ||| ||| || ||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | || |
|
|
| T |
34571595 |
atttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtg |
34571496 |
T |
|
| Q |
242 |
tgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgc |
296 |
Q |
| |
|
||| |||||||||||||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
34571495 |
tgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgc |
34571441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 36 - 260
Target Start/End: Complemental strand, 34579169 - 34578945
Alignment:
| Q |
36 |
cgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcg |
135 |
Q |
| |
|
||||| ||||||||||| |||||||| || || |||||||||||| | || || ||| | ||| | |||||||||||||| | | ||||||||||| | |
|
|
| T |
34579169 |
cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattg |
34579070 |
T |
|
| Q |
136 |
ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa |
235 |
Q |
| |
|
||||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| | |||||||||||||||||||| || |
|
|
| T |
34579069 |
ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa |
34578970 |
T |
|
| Q |
236 |
tctctgtgccattcatgctaagagg |
260 |
Q |
| |
|
| | ||||| ||||||||||||||| |
|
|
| T |
34578969 |
tttgtgtgcaattcatgctaagagg |
34578945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 36 - 260
Target Start/End: Complemental strand, 34584918 - 34584694
Alignment:
| Q |
36 |
cgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcg |
135 |
Q |
| |
|
||||| ||||||||||| |||||||| || || |||||||||||| | || || ||| | ||| | |||||||||||||| | | ||||||||||| | |
|
|
| T |
34584918 |
cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattg |
34584819 |
T |
|
| Q |
136 |
ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa |
235 |
Q |
| |
|
||||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| | |||||||||||||||||||| || |
|
|
| T |
34584818 |
ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa |
34584719 |
T |
|
| Q |
236 |
tctctgtgccattcatgctaagagg |
260 |
Q |
| |
|
| | ||||| ||||||||||||||| |
|
|
| T |
34584718 |
tttgtgtgcaattcatgctaagagg |
34584694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 34562757 - 34562654
Alignment:
| Q |
186 |
cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
285 |
Q |
| |
|
||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | ||||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
34562757 |
cttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc |
34562658 |
T |
|
| Q |
286 |
aact |
289 |
Q |
| |
|
|||| |
|
|
| T |
34562657 |
aact |
34562654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 43479964 - 43479645
Alignment:
| Q |
1 |
cggcaaccggtggtgtaaagaaaccacacagattccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattag |
100 |
Q |
| |
|
|||| ||||| || || ||||| ||||||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||||| || ||||||||||| || |
|
|
| T |
43479964 |
cggccaccggaggagtgaagaagccacacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcag |
43479865 |
T |
|
| Q |
101 |
gaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgct |
200 |
Q |
| |
|
||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||| | ||||| || || ||||||||||||||||||||||| ||| |
|
|
| T |
43479864 |
gaagcttccattccaaagattggttagggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgct |
43479765 |
T |
|
| Q |
201 |
gaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || || || |||||||||||||||||||| || |||||||||||||||||||| || | |||| |
|
|
| T |
43479764 |
gaagcttatcttgttggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaacttgcaagaagaa |
43479665 |
T |
|
| Q |
301 |
tcagaggcgagagggcttag |
320 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
43479664 |
ttagaggcgagagggcttag |
43479645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 63 - 320
Target Start/End: Original strand, 38799395 - 38799652
Alignment:
| Q |
63 |
atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgat |
162 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | ||||||||||||||| | | ||||||||||| ||||| |||||||| |||||||| ||| |
|
|
| T |
38799395 |
atccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagat |
38799494 |
T |
|
| Q |
163 |
tccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggt |
262 |
Q |
| |
|
|||| ||||| || ||||| |||||||||||||||||||||||||| | |||||| | ||||| || || || || ||||| |||||||||||||| || |
|
|
| T |
38799495 |
tccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagt |
38799594 |
T |
|
| Q |
263 |
tactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag |
320 |
Q |
| |
|
||| |||||||||||||| ||||| || || | ||||||||||| |||||||||||| |
|
|
| T |
38799595 |
tacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag |
38799652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 63 - 320
Target Start/End: Complemental strand, 38822122 - 38821865
Alignment:
| Q |
63 |
atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgat |
162 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | ||||||||||||||| | | ||||||||||| ||||| |||||||| |||||||| ||| |
|
|
| T |
38822122 |
atccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagat |
38822023 |
T |
|
| Q |
163 |
tccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggt |
262 |
Q |
| |
|
|||| ||||| || ||||| |||||||||||||||||||||||||| | |||||| | ||||| || || || || ||||| |||||||||||||| || |
|
|
| T |
38822022 |
tccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagt |
38821923 |
T |
|
| Q |
263 |
tactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag |
320 |
Q |
| |
|
||| |||||||||||||| ||||| || || | ||||||||||| |||||||||||| |
|
|
| T |
38821922 |
tacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag |
38821865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 26592006 - 26592291
Alignment:
| Q |
1 |
cggcaaccggtggtgtaaagaaaccacacagattccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattag |
100 |
Q |
| |
|
|||| ||||| || || ||||| |||||| | ||| | |||||||| || ||||| ||||| ||||| ||||| ||||||||||| || ||||||||| | |
|
|
| T |
26592006 |
cggcgaccggcggagtgaagaagccacaccgtttcaggccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcg |
26592105 |
T |
|
| Q |
101 |
gaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgct |
200 |
Q |
| |
|
|||||||| ||||| | | |||||||| || |||||||||||||| || ||||| || || || ||| |||||| || || || |||||||| || |
|
|
| T |
26592106 |
caaacttcctttccagcgtcttgttcgtgagattgctcaggatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcg |
26592205 |
T |
|
| Q |
201 |
gaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca |
286 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| ||||| || |||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
26592206 |
gaggcttatcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattca |
26592291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 36 - 295
Target Start/End: Original strand, 25865573 - 25865832
Alignment:
| Q |
36 |
cgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcg |
135 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||| |||||||||||||| ||||||||| | || | || ||||||||||| | | ||||||||||| | |
|
|
| T |
25865573 |
cgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattg |
25865672 |
T |
|
| Q |
136 |
ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa |
235 |
Q |
| |
|
|||||||||||||||| ||||| |||| || || ||||||| ||| ||||| ||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
25865673 |
ctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtgggattgtttgaggatactaa |
25865772 |
T |
|
| Q |
236 |
tctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcg |
295 |
Q |
| |
|
| | ||||| ||||||||||||||||| || || ||||| ||||||||||| || ||||| |
|
|
| T |
25865773 |
tttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagcttgctcg |
25865832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 48 - 289
Target Start/End: Original strand, 41943829 - 41944070
Alignment:
| Q |
48 |
gttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttca |
147 |
Q |
| |
|
|||||||||||||| ||||| || || |||||||| ||||| ||| | || | || |||||||||||| | | ||||||||||| ||||| ||||||| |
|
|
| T |
41943829 |
gttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttccattccaacgtcttgttcgtgaaattgctcaagatttca |
41943928 |
T |
|
| Q |
148 |
aaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccat |
247 |
Q |
| |
|
| || ||||| ||||||| ||| ||||||| ||| ||||| ||||| || ||||||||||| ||||| |||||||||||||| ||| | ||||| || |
|
|
| T |
41943929 |
agacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgtttgaggataccaatttgtgtgcaat |
41944028 |
T |
|
| Q |
248 |
tcatgctaagagggttactatcatgcctaaggatattcaact |
289 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
41944029 |
tcatgctaagagggttacaattatgccaaaggacattcaact |
41944070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 38807046 - 38807153
Alignment:
| Q |
213 |
gttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgaga |
312 |
Q |
| |
|
|||||| | |||||||| || |||| || || |||||||||||||| |||||||||||||||||||| |||||||| || | |||||||||||||||| |
|
|
| T |
38807046 |
gttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgaga |
38807145 |
T |
|
| Q |
313 |
gggcttag |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
38807146 |
gggcttag |
38807153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 286
Target Start/End: Original strand, 44343978 - 44344078
Alignment:
| Q |
186 |
cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
285 |
Q |
| |
|
||||| ||||| ||||| |||||||| || || |||||||||||||| ||| | ||||| ||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
44343978 |
cttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattc |
44344077 |
T |
|
| Q |
286 |
a |
286 |
Q |
| |
|
| |
|
|
| T |
44344078 |
a |
44344078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 30850 - 31137
Alignment:
| Q |
1 |
cggcaaccggtggtgtaaagaaaccacacagattccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattag |
100 |
Q |
| |
|
|||| ||||| || || ||||| |||||| | |||||||| ||||| || || |||||||||||||| ||||| |||||||||||||||||||| || || |
|
|
| T |
30850 |
cggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataag |
30949 |
T |
|
| Q |
101 |
gaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgct |
200 |
Q |
| |
|
||||||| ||||||| | | ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30950 |
aaaacttc-attccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgct |
31048 |
T |
|
| Q |
201 |
gaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaact |
289 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
31049 |
gaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaact |
31137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 24860401 - 24860702
Alignment:
| Q |
18 |
aagaaaccacacagattccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaa |
117 |
Q |
| |
|
|||||||| ||| | |||||||| ||||| ||||||||||| |||||||| ||||| || || ||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
24860401 |
aagaaacctcaccgtttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaac |
24860500 |
T |
|
| Q |
118 |
gattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttgg |
217 |
Q |
| |
|
| | ||||||||||||||||| ||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24860501 |
gtctcgttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttgg |
24860600 |
T |
|
| Q |
218 |
tttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggct |
317 |
Q |
| |
|
| ||||| ||||| ||||| || || |||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860601 |
actctttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggct |
24860700 |
T |
|
| Q |
318 |
ta |
319 |
Q |
| |
|
|| |
|
|
| T |
24860701 |
ta |
24860702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 34748593 - 34748885
Alignment:
| Q |
1 |
cggcaaccggtggtgtaaagaaaccacacagattccgtccaggaacagttgcacttcgtgaaatccgaaagtatcagaagagcactgagcttctcattag |
100 |
Q |
| |
|
|||| |||||||| || |||||||| ||| | ||| | |||||||| || || || ||||| ||||| ||||| ||||||||||| || || ||||| | |
|
|
| T |
34748593 |
cggccaccggtggagtgaagaaacctcaccgtttcagaccaggaaccgtcgctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccg |
34748692 |
T |
|
| Q |
101 |
gaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgct |
200 |
Q |
| |
|
||||| || ||||| | |||||||||| ||||||||||||||||| || ||||| || ||||| ||| || || || || || |||||||| ||| |
|
|
| T |
34748693 |
caaactccccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtgtcggcgctgcaagaagcggct |
34748792 |
T |
|
| Q |
201 |
gaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgct |
293 |
Q |
| |
|
|| |||||||| |||||| | |||||||||||||| ||||||||||||||||| ||| | || |||||||||||||||||||| || |||||| |
|
|
| T |
34748793 |
gaggcttatctcgttggtctctttgaggatactaacctctgtgccattcatgccaagcgtgtcactatcatgcctaaggatatccagctcgct |
34748885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 53290720 - 53290838
Alignment:
| Q |
147 |
aaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgcca |
246 |
Q |
| |
|
||||||||||| | ||||| |||| | |||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||| || ||| ||| |
|
|
| T |
53290720 |
aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca |
53290819 |
T |
|
| Q |
247 |
ttcatgctaagagggttac |
265 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
53290820 |
ttcatgctaagaggattac |
53290838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 40035830 - 40035909
Alignment:
| Q |
69 |
aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaa |
148 |
Q |
| |
|
|||||||||||||| |||||||| | || ||||| || |||||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
40035830 |
aagtatcagaagagtactgagctcttgatcaggaagctcccattccagaggttggttcgtgaaattgctcaggacttcaa |
40035909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
| Q |
189 |
caagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaagga |
280 |
Q |
| |
|
||||| ||||||||||| |||||||||||| | |||||||| ||||| | ||||| || ||||| ||| | |||||||| ||||| ||||| |
|
|
| T |
40036062 |
caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga |
40036153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 44771137 - 44771103
Alignment:
| Q |
123 |
gttcgtgaaatcgctcaggatttcaaaacagatct |
157 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44771137 |
gttcgtgaaatcgctcaggatttcaaaaccgatct |
44771103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 7594236 - 7594127
Alignment:
| Q |
186 |
cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
285 |
Q |
| |
|
||||| ||||| ||||| ||||| || ||||| ||||||||||| || ||||| ||||| ||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
7594236 |
cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc |
7594137 |
T |
|
| Q |
286 |
aactcgctcg |
295 |
Q |
| |
|
| || ||||| |
|
|
| T |
7594136 |
agcttgctcg |
7594127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 17769342 - 17769233
Alignment:
| Q |
111 |
ttccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatc |
210 |
Q |
| |
|
||||||||||| ||| | |||||| | ||||||||||||||||||| ||||| | || ||| |||||||||||||||||||||| || |||||||| |
|
|
| T |
17769342 |
ttccaaagatttgttagagaaatcacgaaggatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatc |
17769243 |
T |
|
| Q |
211 |
ttgttggttt |
220 |
Q |
| |
|
|||||||||| |
|
|
| T |
17769242 |
ttgttggttt |
17769233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 1539294 - 1539185
Alignment:
| Q |
111 |
ttccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatc |
210 |
Q |
| |
|
||||||||||| ||| | |||||| | || |||||||||||||||| ||||| | || ||| |||||||| ||||||||||||| || |||||||| |
|
|
| T |
1539294 |
ttccaaagatttgttagagaaatcacgaagtatttcaaaacagatctccgattttagagtagtactgtttcttctcttcaagaagccagtgtagcttatc |
1539195 |
T |
|
| Q |
211 |
ttgttggttt |
220 |
Q |
| |
|
|||||||||| |
|
|
| T |
1539194 |
ttgttggttt |
1539185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 27440846 - 27440954
Alignment:
| Q |
112 |
tccaaagattggttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatct |
211 |
Q |
| |
|
|||||||||| ||| | |||||| | ||||||||||||||||||| ||||| | || || ||||||||||||||||||||| || ||||||||| |
|
|
| T |
27440846 |
tccaaagatttgttagagaaatcacgaaggatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatct |
27440945 |
T |
|
| Q |
212 |
tgttggttt |
220 |
Q |
| |
|
||||||||| |
|
|
| T |
27440946 |
tgttggttt |
27440954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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