View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5965_low_16 (Length: 324)

Name: NF5965_low_16
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5965_low_16
NF5965_low_16
[»] chr7 (10 HSPs)
chr7 (194-308)||(12413890-12414004)
chr7 (11-120)||(12413716-12413825)
chr7 (14-97)||(18091975-18092058)
chr7 (14-97)||(18061898-18061981)
chr7 (196-289)||(20396188-20396281)
chr7 (14-97)||(20396009-20396095)
chr7 (14-97)||(18123948-18124031)
chr7 (199-289)||(18123745-18123835)
chr7 (194-275)||(18091785-18091866)
chr7 (194-275)||(18061708-18061789)
[»] scaffold0108 (2 HSPs)
scaffold0108 (13-107)||(15843-15937)
scaffold0108 (199-295)||(16036-16132)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 194 - 308
Target Start/End: Original strand, 12413890 - 12414004
Alignment:
Q  194 gtaggtattgagccttttgtgactatcatgcattttgactacccgcttggccttcaacaaaagtttggtggcttcttaaatcgcagcattgtgtaattaa 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12413890 gtaggtattgagccttttgtgactatcatgcattttgactacccgcttgcccttcaacaaaagtttggtggtttcttaaatcgcagcattgtgtaattaa 12413989  T
Q  294 tctcatctcatcttg 308  Q
    |||||||||||||||    
T  12413990 tctcatctcatcttg 12414004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 12413716 - 12413825
Alignment:
Q  11 cacagatggaaccttgagaggggggataaacaaagaaggtatcaacttctacaacaatttgatcaatgaattacttaaaaatggtatagattaaaccgac 110  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12413716 cacagatggaaccttgagaggggggataaataaagaaggtatcaacttctacaacaatttgatcaatgaattacttaaaaatggtatagattaaaccgac 12413815  T
Q  111 cacattcctt 120  Q
    ||||||||||    
T  12413816 cacattcctt 12413825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 18092058 - 18091975
Alignment:
Q  14 agatggaaccttgagaggggggataaacaaagaaggtatcaacttctacaacaatttgatcaatgaattacttaaaaatggtat 97  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||    
T  18092058 agatggaaccttgaaaggaggtataaacaaagaaggtatcaacttctacaacaatttgatcaacgagttactcaacaatggtat 18091975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 18061981 - 18061898
Alignment:
Q  14 agatggaaccttgagaggggggataaacaaagaaggtatcaacttctacaacaatttgatcaatgaattacttaaaaatggtat 97  Q
    |||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||    
T  18061981 agatggaaccttaaaaggaggtataaacaaagaaggtatcaacttctacaacaatttgatcaacgagttactcaacaatggtat 18061898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 289
Target Start/End: Original strand, 20396188 - 20396281
Alignment:
Q  196 aggtattgagccttttgtgactatcatgcattttgactacccgcttggccttcaacaaaagtttggtggcttcttaaatcgcagcattgtgtaa 289  Q
    ||||||||| ||||||||||||||| |||| |||||||| ||  | |  |||||||||||  |||| |||||||||||||||  ||||||||||    
T  20396188 aggtattgaaccttttgtgactatcctgcactttgactatccattagctcttcaacaaaatattggcggcttcttaaatcgctccattgtgtaa 20396281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 20396009 - 20396095
Alignment:
Q  14 agatggaaccttgagaggggggataaacaaagaaggtatcaa---cttctacaacaatttgatcaatgaattacttaaaaatggtat 97  Q
    |||||||||||| | ||| || |||||||||||||||||| |   ||||||||||||||||||||| || ||||| || ||||||||    
T  20396009 agatggaaccttaaaaggaggtataaacaaagaaggtatcgacttcttctacaacaatttgatcaacgagttactcaacaatggtat 20396095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 18124031 - 18123948
Alignment:
Q  14 agatggaaccttgagaggggggataaacaaagaaggtatcaacttctacaacaatttgatcaatgaattacttaaaaatggtat 97  Q
    |||||||||||| | ||| ||  |||| |||||||||||| | |||||||||||||||||||| || ||||| || ||||||||    
T  18124031 agatggaaccttaaaaggaggtgtaaataaagaaggtatcgagttctacaacaatttgatcaacgagttactcaacaatggtat 18123948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 18123835 - 18123745
Alignment:
Q  199 tattgagccttttgtgactatcatgcattttgactacccgcttggccttcaacaaaagtttggtggcttcttaaatcgcagcattgtgtaa 289  Q
    |||||| ||||||||||||||| |||| |||||||| ||  | |  |||||||||||  |||| |||||||||||||||  ||||||||||    
T  18123835 tattgaaccttttgtgactatcctgcactttgactatccattagctcttcaacaaaatattggcggcttcttaaatcgctccattgtgtaa 18123745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 275
Target Start/End: Complemental strand, 18091866 - 18091785
Alignment:
Q  194 gtaggtattgagccttttgtgactatcatgcattttgactacccgcttggccttcaacaaaagtttggtggcttcttaaatc 275  Q
    ||||||||||| ||||||||||||||  ||||  ||||||| ||  | |  |||||| ||||||||||||||||||||||||    
T  18091866 gtaggtattgaaccttttgtgactatattgcaccttgactatccattagctcttcaaaaaaagtttggtggcttcttaaatc 18091785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 275
Target Start/End: Complemental strand, 18061789 - 18061708
Alignment:
Q  194 gtaggtattgagccttttgtgactatcatgcattttgactacccgcttggccttcaacaaaagtttggtggcttcttaaatc 275  Q
    ||||||||||| ||||||||||||||  ||||  ||||||| ||  | |  |||||| |||||||||||||||||| |||||    
T  18061789 gtaggtattgaaccttttgtgactatattgcaccttgactatccattagctcttcaaaaaaagtttggtggcttctcaaatc 18061708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 15843 - 15937
Alignment:
Q  13 cagatggaaccttgagaggggggataaacaaagaaggtatcaacttctacaacaatttgatcaatgaattacttaaaaatggtatagattaaacc 107  Q
    ||||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||| |||||    
T  15843 cagatggaaccttgaaaggaggtataaacaaagaaggcatcaacttctacaacaatttgatcaatgacttacttgaaaatggtatggatcaaacc 15937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 199 - 295
Target Start/End: Original strand, 16036 - 16132
Alignment:
Q  199 tattgagccttttgtgactatcatgcattttgactacccgcttggccttcaacaaaagtttggtggcttcttaaatcgcagcattgtgtaattaatc 295  Q
    ||||||||||||||||||||||||||||||||||||||| || | |||||| |||||| || | ||||||||||||||||  |||||||||||||||    
T  16036 tattgagccttttgtgactatcatgcattttgactacccactagcccttcaccaaaagcttcgcggcttcttaaatcgcactattgtgtaattaatc 16132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University