View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965_low_25 (Length: 256)
Name: NF5965_low_25
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 46960196 - 46960422
Alignment:
| Q |
20 |
cagtcatcacctgaaatgggacataagcagtgacatgtttttcttctggcacattacttgacataaagtttattctggatttctacaagacagtaatgaa |
119 |
Q |
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| T |
46960196 |
cagtcatcacctgaaatgggacataagcagtgaaatgtttttcttctggcacattacttgacataaagtttattctggatttctacaagacagtaatgaa |
46960295 |
T |
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| Q |
120 |
agtgaataagatgttaaattgccacttagaccattatatctttgaagttcggtgaagttaatgttgcattaggttgaagttaactcgcctgtttttacgt |
219 |
Q |
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| T |
46960296 |
agtgaataagatgttaaattgccacttagaccattatatctttgaagttcggtaaagttaatgttgcattaggttgaagttaactcgcctgtttttacgt |
46960395 |
T |
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| Q |
220 |
cactatgactaatctcaataccctttg |
246 |
Q |
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||||||||||||||||||||||||||| |
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| T |
46960396 |
cactatgactaatctcaataccctttg |
46960422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 44521949 - 44521844
Alignment:
| Q |
20 |
cagtcatcacctgaaatgggacataa-gcagtgacatgtttttcttctggcacattacttga-cataaagtttattctgg-atttctacaagacagtaat |
116 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||| ||| ||||||||||||| | ||| |||| || ||||| |
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| T |
44521949 |
cagtcatcacctgaaatgggacataatgcagtgaaatgtttgtcttctgacacattacttgatcattaagtttattctggaacttcgacaaaacggtaat |
44521850 |
T |
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| Q |
117 |
gaaagt |
122 |
Q |
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|||||| |
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| T |
44521849 |
gaaagt |
44521844 |
T |
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