View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5965_low_28 (Length: 247)

Name: NF5965_low_28
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5965_low_28
NF5965_low_28
[»] chr3 (3 HSPs)
chr3 (1-231)||(8091395-8091638)
chr3 (34-102)||(8099043-8099111)
chr3 (146-202)||(51497981-51498037)
[»] chr4 (6 HSPs)
chr4 (1-72)||(7730142-7730213)
chr4 (162-218)||(6844641-6844695)
chr4 (161-214)||(19447876-19447929)
chr4 (165-218)||(23312466-23312519)
chr4 (153-208)||(43061678-43061734)
chr4 (165-197)||(46011639-46011671)
[»] chr6 (2 HSPs)
chr6 (148-220)||(23918344-23918416)
chr6 (146-217)||(10760839-10760909)
[»] chr2 (4 HSPs)
chr2 (146-214)||(3103522-3103590)
chr2 (146-196)||(33498619-33498669)
chr2 (162-203)||(41508543-41508584)
chr2 (163-208)||(44605145-44605190)
[»] chr7 (2 HSPs)
chr7 (132-207)||(37775959-37776034)
chr7 (130-218)||(7328687-7328775)
[»] chr8 (3 HSPs)
chr8 (163-208)||(31514994-31515040)
chr8 (162-218)||(3066049-3066105)
chr8 (155-211)||(14496028-14496083)
[»] scaffold0373 (1 HSPs)
scaffold0373 (162-218)||(1214-1268)
[»] chr5 (1 HSPs)
chr5 (163-220)||(1375905-1375962)
[»] chr1 (2 HSPs)
chr1 (163-212)||(43609820-43609869)
chr1 (158-206)||(27424770-27424818)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 8091638 - 8091395
Alignment:
Q  1 taatccaatgcttaaccctgtcaccaaattcactgaagcatagttctgcataatatgcaaaatcttgcctgtggaaaattaaaatatgaactttttcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8091638 taatccaatgcttaaccctgtcaccaaattcactgaagcatagttctgcataatatgcataatcttgcctgtggaaaattaaaatatgaactttttcagc 8091539  T
Q  101 tatgaagtacataataaagcaccgacacaa-------------acacgacactaagattgacaagtcgacactagtaataatttgagaaaataggattat 187  Q
    |||||||||||| |||||||||||||||||             |||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||    
T  8091538 tatgaagtacatcataaagcaccgacacaaacactgacaccaaacacgacactgagattgacaagtcgacactggtaataatttaagaaaataggattat 8091439  T
Q  188 tgaatgtaattacatgtgtcgatgtcgtgtctgtactatacata 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8091438 tgaatgtaattacatgtgtcgatgtcgtgtctgtactatacata 8091395  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 8099111 - 8099043
Alignment:
Q  34 tgaagcatagttctgcataatatgcaaaatcttgcctgtggaaaattaaaatatgaactttttcagcta 102  Q
    ||||||||||||  ||||||||||||||||||||| | | |||||| ||||||||||| ||| ||||||    
T  8099111 tgaagcatagttaagcataatatgcaaaatcttgcttctagaaaatcaaaatatgaacatttgcagcta 8099043  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 51497981 - 51498037
Alignment:
Q  146 tgacaagtcgacactagtaataatttgagaaaataggattattgaatgtaattacat 202  Q
    ||||| ||| |||||||||||||||||| ||||||| || ||||||||||| |||||    
T  51497981 tgacacgtccacactagtaataatttgataaaatagaataattgaatgtaactacat 51498037  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7730213 - 7730142
Alignment:
Q  1 taatccaatgcttaaccctgtcaccaaattcactgaagcatagttctgcataatatgcaaaatcttgcctgt 72  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||||||||||  ||||||||||||||||    
T  7730213 taatccaatgcttaactctgtcaccaaattctctgaagcatacttctgcataatcagcaaaatcttgcctgt 7730142  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 6844695 - 6844641
Alignment:
Q  162 gtaataatttgagaaaataggattattgaatgtaattacatgtgtcgatgtcgtgtc 218  Q
    ||||||||||||||||||  ||  |||||||||||| ||||||||||||||| ||||    
T  6844695 gtaataatttgagaaaat--gacaattgaatgtaatcacatgtgtcgatgtcatgtc 6844641  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 19447929 - 19447876
Alignment:
Q  161 agtaataatttgagaaaataggattattgaatgtaattacatgtgtcgatgtcg 214  Q
    ||||||||||||| ||||| |||| |||||||||||  |||||| |||||||||    
T  19447929 agtaataatttgataaaattggataattgaatgtaaccacatgtatcgatgtcg 19447876  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 23312466 - 23312519
Alignment:
Q  165 ataatttgagaaaataggattattgaatgtaattacatgtgtcgatgtcgtgtc 218  Q
    ||||||||||||||| | ||||||||||||||| |||| ||||  |||||||||    
T  23312466 ataatttgagaaaattgaattattgaatgtaatcacatttgtcagtgtcgtgtc 23312519  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 43061734 - 43061678
Alignment:
Q  153 tcgacactagtaataatttgagaaaata-ggattattgaatgtaattacatgtgtcg 208  Q
    ||||||||||||||||||||||||||||   || |||||||||||  ||||||||||    
T  43061734 tcgacactagtaataatttgagaaaatataaataattgaatgtaacaacatgtgtcg 43061678  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 46011671 - 46011639
Alignment:
Q  165 ataatttgagaaaataggattattgaatgtaat 197  Q
    ||||||||||||||||| |||||||||||||||    
T  46011671 ataatttgagaaaatagaattattgaatgtaat 46011639  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 23918416 - 23918344
Alignment:
Q  148 acaagtcgacactagtaataatttgagaaaataggattattgaatgtaattacatgtgtcgatgtcgtgtctg 220  Q
    ||||||| ||||| ||||||||||||||| |||| || |||||||| |||||||||||||| ||| |||||||    
T  23918416 acaagtcaacacttgtaataatttgagaagatagaataattgaatgcaattacatgtgtcggtgttgtgtctg 23918344  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 10760909 - 10760839
Alignment:
Q  146 tgacaagtcgacactagtaataatttgagaaaataggattattgaatgtaattacatgtgtcgatgtcgtgt 217  Q
    ||||| |||||||||  |||||||||||||||||   || |||||||||||| ||| |||||||||||||||    
T  10760909 tgacacgtcgacactgataataatttgagaaaatgacat-attgaatgtaatcacacgtgtcgatgtcgtgt 10760839  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 3103590 - 3103522
Alignment:
Q  146 tgacaagtcgacactagtaataatttgagaaaataggattattgaatgtaattacatgtgtcgatgtcg 214  Q
    ||||| || |||| ||||||||||||||||||||| ||| |||||||||||   |||||||| ||||||    
T  3103590 tgacacgtggacattagtaataatttgagaaaataagataattgaatgtaaccgcatgtgtcaatgtcg 3103522  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 33498619 - 33498669
Alignment:
Q  146 tgacaagtcgacactagtaataatttgagaaaataggattattgaatgtaa 196  Q
    ||||| |||||||| ||||||||||||||||||| | || |||||||||||    
T  33498619 tgacacgtcgacacaagtaataatttgagaaaatggaataattgaatgtaa 33498669  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 41508543 - 41508584
Alignment:
Q  162 gtaataatttgagaaaataggattattgaatgtaattacatg 203  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  41508543 gtaataatttgagaaaatagaataattgaatgtaactacatg 41508584  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 44605190 - 44605145
Alignment:
Q  163 taataatttgagaaaataggattattgaatgtaattacatgtgtcg 208  Q
    ||||||||||||||||||  || ||| |||||||||||||||||||    
T  44605190 taataatttgagaaaataacataattcaatgtaattacatgtgtcg 44605145  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 37775959 - 37776034
Alignment:
Q  132 cacgacactaagattgacaagtcgacactagtaataatttgagaaaataggattattgaatgtaattacatgtgtc 207  Q
    ||||||||| | |||||||| ||||||| |||| ||||||||||||||   || ||| |||||||| |||||||||    
T  37775959 cacgacactgacattgacaaatcgacaccagtagtaatttgagaaaatgacataattaaatgtaatcacatgtgtc 37776034  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 7328775 - 7328687
Alignment:
Q  130 aacacgacactaagattgacaagtcgacactagtaataatttgagaaaataggattattgaatgtaattacatgtgtcgatgtcgtgtc 218  Q
    ||||||||||  | ||| ||| ||||| |||  ||||||||||||||||||  || ||| | |||||||| |||||||| |||||||||    
T  7328775 aacacgacacagacattaacacgtcgatactgctaataatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcgtgtc 7328687  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 31514994 - 31515040
Alignment:
Q  163 taataatttgagaaaatag-gattattgaatgtaattacatgtgtcg 208  Q
    ||||||||||||||||||| |||||||||||||||| |||| |||||    
T  31514994 taataatttgagaaaatagagattattgaatgtaatcacatatgtcg 31515040  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 3066049 - 3066105
Alignment:
Q  162 gtaataatttgagaaaataggatt-attgaatgtaattacatgtgtcgatgtcgtgtc 218  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||| | |||||||    
T  3066049 gtaataatttgagaaaat-ggattaattgaatgtaataacatgtgtcggtatcgtgtc 3066105  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 14496083 - 14496028
Alignment:
Q  155 gacactagtaataatttgagaaaataggattattgaatgtaattacatgtgtcgatg 211  Q
    ||||| |||||||||||||||||||  | | ||||||||||| ||||||||||||||    
T  14496083 gacaccagtaataatttgagaaaatgag-tgattgaatgtaactacatgtgtcgatg 14496028  T

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Target: scaffold0373 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 1268 - 1214
Alignment:
Q  162 gtaataatttgagaaaataggattattgaatgtaattacatgtgtcgatgtcgtgtc 218  Q
    ||||||||||||||||||  ||  |||||||||||| ||||||||||||||| ||||    
T  1268 gtaataatttgagaaaat--gacaattgaatgtaatcacatgtgtcgatgtcatgtc 1214  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 1375962 - 1375905
Alignment:
Q  163 taataatttgagaaaataggattattgaatgtaattacatgtgtcgatgtcgtgtctg 220  Q
    ||||||||||| ||||||| || |||||||||||  |||||||||| ||| |||||||    
T  1375962 taataatttgaaaaaatagcataattgaatgtaaaaacatgtgtcggtgttgtgtctg 1375905  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 43609869 - 43609820
Alignment:
Q  163 taataatttgagaaaataggattattgaatgtaattacatgtgtcgatgt 212  Q
    ||||||||||||||||||  || |||||||||||| ||||||||| ||||    
T  43609869 taataatttgagaaaataacataattgaatgtaatcacatgtgtccatgt 43609820  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 27424818 - 27424770
Alignment:
Q  158 actagtaataatttgagaaaataggattattgaatgtaattacatgtgt 206  Q
    |||||||||||||| ||||||||| || ||||||| |||| ||||||||    
T  27424818 actagtaataatttaagaaaatagaatgattgaatataataacatgtgt 27424770  T

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