View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965_low_31 (Length: 235)
Name: NF5965_low_31
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36543876 - 36543654
Alignment:
| Q |
1 |
tgcttatcatcaatatgtttgccttctaaaatcttccactcttagcctttctttcaacatgacatgataaacatatcacttacatggataaaccaattag |
100 |
Q |
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| T |
36543876 |
tgcttatcatcaatatgtttgccttctaaaatcttccactcttagcctttctttcaacatgacaagataaacatatcacttacatggataaaccaattag |
36543777 |
T |
|
| Q |
101 |
agataatacatgatacaatattcacaatcatgtgaaaaaagacatctagacgtacttgaggaaaattagtgaaaaaacacatttaattcaaacaattaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
36543776 |
agataatacatgatacaatattcacaatcatgtgaaataagacatatagacgtacttgaggaaaattagtgaaaaaacacatgaaattcaaacaattaga |
36543677 |
T |
|
| Q |
201 |
aatcaggttagaatatttaatct |
223 |
Q |
| |
|
|||||||||| |||||||||||| |
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|
| T |
36543676 |
aatcaggttaaaatatttaatct |
36543654 |
T |
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