View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5965_low_6 (Length: 459)
Name: NF5965_low_6
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Complemental strand, 33901329 - 33900897
Alignment:
| Q |
16 |
catatttctggacaggagctttagccatctgagcagactcaacaagtctaacaatctgtgaaagtgcagtttctgatccaacccttgttaccttaacatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33901329 |
catatttctggacaggagctttagccatctgagcagactcaacaagtctaacaatctgtgaaagtgcagtttctgatccaatccttgttaccttaacatg |
33901230 |
T |
|
| Q |
116 |
caaaacaccattctcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcaccagttatcatactctcatttacatga |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33901229 |
caaaacaccattttcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcaccagttatcatactctcatttacatga |
33901130 |
T |
|
| Q |
216 |
ctttgtccccaaacaacaaaaccatccgatgctactttcgtgcccggcacaactttgatcacatcagtcttctgtatcaaccagctatcaatttctcttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
33901129 |
ctttgtccccaaacaacaaaaccatccgatgctactttcgtgcccggcacaactttgatcacatcattcttctgtatcaacctgctatcaatttctcttt |
33901030 |
T |
|
| Q |
316 |
cgcctataacatttcccttatcgtcatcaagagttagtaaggttgctgtatcaggtgttaaatccatgagtttcgcaatagcttgtgatgttttcccttt |
415 |
Q |
| |
|
| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33901029 |
cacctagaacatttcccttatcatcatcaagagttagtaaggttgctgtatcaggtgttaaatccatgagtttcgcaatagcttgtgatgttttcccttt |
33900930 |
T |
|
| Q |
416 |
agccaacacttccaaatacttgccaagtagaat |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
33900929 |
agccaacacttccaaatacttgccaagtagaat |
33900897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Complemental strand, 33918855 - 33918423
Alignment:
| Q |
16 |
catatttctggacaggagctttagccatctgagcagactcaacaagtctaacaatctgtgaaagtgcagtttctgatccaacccttgttaccttaacatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33918855 |
catatttctggacaggagctttagccatctgagcagactcaacaagtctaacaatctgggaaagtgcagtttctgatccaacccttgctaccttaacatg |
33918756 |
T |
|
| Q |
116 |
caaaacaccattctcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcaccagttatcatactctcatttacatga |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33918755 |
caaaacaccattttcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcaccagttatcatactctcatttacatga |
33918656 |
T |
|
| Q |
216 |
ctttgtccccaaacaacaaaaccatccgatgctactttcgtgcccggcacaactttgatcacatcagtcttctgtatcaaccagctatcaatttctcttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
33918655 |
ctttgtccccaaacaacaaaaccatctgatgctactttcgcgcccggcacaactttgatcacatcattcttctgtatcaacctgctatcaatttctcttt |
33918556 |
T |
|
| Q |
316 |
cgcctataacatttcccttatcgtcatcaagagttagtaaggttgctgtatcaggtgttaaatccatgagtttcgcaatagcttgtgatgttttcccttt |
415 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33918555 |
cacctataacatttcccttatcatcatcaagagttagtaaggttgctgtatcaggtgttaaatccatgagtttcgcaatagcttgtgatgttttcccttt |
33918456 |
T |
|
| Q |
416 |
agccaacacttccaaatacttgccaagtagaat |
448 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
33918455 |
agccaacacttccaaatacttgccaaatagaat |
33918423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 2781465 - 2781755
Alignment:
| Q |
21 |
ttctggacaggagctttagccatctgagcagactcaacaagtctaacaatctgtgaaagtgcagtttctgatccaacccttgttaccttaacatgcaaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| ||||| |||| |||||||| | |
|
|
| T |
2781465 |
ttctggacaggagctttagccatctgagcagactcaacaagtcgtacaatctgtgaaagagcactttctgatccaacctttgttgcctttacatgcaaga |
2781564 |
T |
|
| Q |
121 |
caccattctcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcaccagttatcatactctcatttacatgactttg |
220 |
Q |
| |
|
||||||| ||||||| ||| |||||||| || ||||| | ||| |||||| || || ||||||||| ||||||||||||||||| |||||||| || |
|
|
| T |
2781565 |
caccattttcattcaaagttccaccaataacagtatcatctttcctcttagacacgggacgtgcctcacctgttatcatactctcattcacatgactctg |
2781664 |
T |
|
| Q |
221 |
tccccaaacaacaaaaccatccgatgctactttcgtgcccggcacaactttgatcacatcagtcttctgtatcaaccagctatcaatttct |
311 |
Q |
| |
|
||||||||||| | ||||| || || ||||| | ||||| | || || ||||||||| ||||||| | ||||| |||||||||||| |
|
|
| T |
2781665 |
cccccaaacaacgagcccatcagaagcaacttttgcacccggaataatcttaatcacatcattcttctgaaccaacctactatcaatttct |
2781755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University