View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5965_low_9 (Length: 359)
Name: NF5965_low_9
Description: NF5965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5965_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 41918278 - 41918603
Alignment:
| Q |
17 |
tgtaaaaggaaaagagttagaagagaaagaataagtttggtaaaactcttgcccccgtttgcaaagggcaagagatcaaaaagttttgttacgaagagaa |
116 |
Q |
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| T |
41918278 |
tgtaaaaggaaaagagttagaagagaaagaataagtttggtaaaactcttgcccccgtttgcaaagggccagagatcaaaaagttttgttacgaagagaa |
41918377 |
T |
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| Q |
117 |
aatgttggacacaattttgggcggaaggaaattctacaaccagccgaaaaatgagatctttaatcaagaaaattatttccttgaagnnnnnnntgcatcg |
216 |
Q |
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| T |
41918378 |
aatgttggacacaattttgggcagaaggaaattctacaaccagccgaaaaatgagatctttaatcaagaaaattatttccttgaagaaaaaaatgcatcg |
41918477 |
T |
|
| Q |
217 |
aaagaaaaataagagagacgtccgcaaaaagtcaggggaattagttctttataatcgaccatcagcagaagttgaagtaatgcttgacgaagagacatta |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41918478 |
aaagaaaaataagagagatgtccgcaaaaagtcaggggaattagttctttataatcgaccatcagcagaagttgaagtaatgcttgacgaagagacatta |
41918577 |
T |
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| Q |
317 |
cgagtatggaatttactcgttgttga |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
41918578 |
cgagtatggaatttactcgttgttga |
41918603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 1687154 - 1687478
Alignment:
| Q |
17 |
tgtaaaaggaaaagagttagaagagaaagaataagtttggtaaaactcttgcccccgtttgcaaagggcaagagatcaaaaagttttgttacgaagagaa |
116 |
Q |
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||||| ||||||||||| | |||||||||||||| |||||||||||||||| ||| ||||||||||| | |||||||||| |||| ||| |||||| | |
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| T |
1687154 |
tgtaagaggaaaagagtaaaaagagaaagaataaatttggtaaaactcttgaacccttttgcaaagggtagtagatcaaaaacttttattaggaagagga |
1687253 |
T |
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| Q |
117 |
aatgttggacacaattttgggcggaaggaaatt---ctacaaccagccgaaaaatgagatctttaatcaagaaaattatttccttgaagnnnnnnntgca |
213 |
Q |
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||||||||| | | || | | |||||||||| |||||| |||||||||||||| | || |||||||||| |||||||||| || | || |
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| T |
1687254 |
aatgttggaaagatttctacgtagaaggaaattctactacaatcagccgaaaaatgaaaactataatcaagaagattatttcctcaaataaaaaaataca |
1687353 |
T |
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| Q |
214 |
tcgaaagaaaaataagagagacgtccgcaaaaagtcaggggaattagttctttataatcgaccatcagcagaagttgaagtaatgcttgacgaagagaca |
313 |
Q |
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||||||| |||||||||| | ||||| ||||| ||||| ||||||||||||||| | || |||| |||| | |||| | |||||||||||||| |
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| T |
1687354 |
tcgaaaggcaaataagagaaatgtccgtaaaaaatcaggagaattagttctttatgaacggccattgttgaaagtcaatgtaaagtttgacgaagagaca |
1687453 |
T |
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| Q |
314 |
ttacgagtatggaatttactcgttg |
338 |
Q |
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||||| |||||||| || ||||||| |
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| T |
1687454 |
ttacgtgtatggaacttgctcgttg |
1687478 |
T |
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