View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5966-Insertion-2 (Length: 403)
Name: NF5966-Insertion-2
Description: NF5966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5966-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 403
Target Start/End: Complemental strand, 45740077 - 45739687
Alignment:
| Q |
7 |
cacttatcagttctcattgggtgtgtaatggagctacgctgannnnnnnnnnnnnngaagtaaaattcctaatgcacctagattcatggcccataaactt |
106 |
Q |
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| T |
45740077 |
cacttatcagttctcattgggtgtgtaatggagctacgctgaatatatat------gaagtaaaattcctgatgcacctagattcatggcccataaactt |
45739984 |
T |
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| Q |
107 |
tataatgcaccctacgtactaatgatacccccctagttagaaaacagttctatccaaaaggtgtttggtcaattttttaaattttgcatcgtagatgtta |
206 |
Q |
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| T |
45739983 |
tataatgcaccctacggactaatgatacccccctagttggaaaacagttctatccaaaaggtgtttggtcaattttttaaattttgcatcgtagatgtta |
45739884 |
T |
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| Q |
207 |
tggtctagtcaaacatacactctagatctgaccgttataagcgtggttacattgttcagcgaccgtagattcataaccgtattccatacctgtgtatgaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45739883 |
tggtctagtcaaacatacactctagatctgaccgttataagcgtggttacattgttcagcggccgtagattcataaccgtattccatacctgtgtatgaa |
45739784 |
T |
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| Q |
307 |
agttgctttgtaagtctcttgcattgatcaaaagtttcttggattgatcggatcataacttctgatgacacaaaatctatcgtttgttacgacccga |
403 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
45739783 |
agttgctttataagtctcttgcattgatcaaaagtttcttggattgatcggatcataacttctgacgacacaaaatctatcgttggttacgacccga |
45739687 |
T |
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