View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5966-Insertion-3 (Length: 325)

Name: NF5966-Insertion-3
Description: NF5966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5966-Insertion-3
NF5966-Insertion-3
[»] scaffold0028 (1 HSPs)
scaffold0028 (7-325)||(72596-72915)
[»] chr5 (19 HSPs)
chr5 (186-275)||(38864988-38865077)
chr5 (186-275)||(38808373-38808462)
chr5 (117-150)||(25988819-25988852)
chr5 (109-150)||(35493970-35494011)
chr5 (90-150)||(15889416-15889475)
chr5 (90-150)||(16701578-16701637)
chr5 (113-145)||(33412118-33412150)
chr5 (79-150)||(17151839-17151909)
chr5 (82-132)||(21636339-21636388)
chr5 (82-132)||(21644586-21644635)
chr5 (82-132)||(28344551-28344600)
chr5 (107-145)||(35270683-35270721)
chr5 (107-145)||(41630114-41630152)
chr5 (108-145)||(22522803-22522840)
chr5 (90-143)||(32200451-32200503)
chr5 (108-145)||(40715951-40715988)
chr5 (78-134)||(8545002-8545057)
chr5 (110-150)||(27903137-27903177)
chr5 (107-147)||(33928660-33928700)
[»] chr7 (34 HSPs)
chr7 (107-150)||(18023700-18023743)
chr7 (82-145)||(3830065-3830127)
chr7 (82-147)||(35224115-35224179)
chr7 (96-149)||(42829232-42829284)
chr7 (82-147)||(9903500-9903567)
chr7 (90-134)||(48629078-48629121)
chr7 (78-133)||(6225740-6225794)
chr7 (82-137)||(10326951-10327005)
chr7 (107-150)||(21554931-21554974)
chr7 (112-147)||(26717928-26717963)
chr7 (112-150)||(2648298-2648336)
chr7 (112-150)||(10242506-10242544)
chr7 (108-150)||(19599167-19599209)
chr7 (108-150)||(36755036-36755078)
chr7 (108-150)||(36760833-36760875)
chr7 (107-137)||(47155114-47155144)
chr7 (108-150)||(47342431-47342473)
chr7 (107-149)||(47607908-47607950)
chr7 (80-145)||(5458073-5458137)
chr7 (108-145)||(6781829-6781866)
chr7 (108-145)||(10244749-10244786)
chr7 (108-145)||(18714470-18714507)
chr7 (108-145)||(19626527-19626564)
chr7 (108-145)||(27462438-27462475)
chr7 (108-137)||(33473531-33473560)
chr7 (108-145)||(34448612-34448649)
chr7 (91-132)||(34773237-34773277)
chr7 (108-145)||(38374193-38374230)
chr7 (110-147)||(39280818-39280855)
chr7 (107-148)||(42753526-42753567)
chr7 (108-145)||(46737807-46737844)
chr7 (110-150)||(3536251-3536291)
chr7 (109-145)||(20085761-20085797)
chr7 (109-145)||(20455159-20455195)
[»] chr8 (22 HSPs)
chr8 (80-145)||(21589203-21589267)
chr8 (107-149)||(7553700-7553742)
chr8 (107-145)||(8881296-8881334)
chr8 (90-150)||(27718891-27718950)
chr8 (110-149)||(29716698-29716737)
chr8 (86-149)||(37141358-37141420)
chr8 (110-148)||(2508629-2508667)
chr8 (79-145)||(18422455-18422520)
chr8 (88-150)||(24195252-24195313)
chr8 (98-144)||(33482152-33482197)
chr8 (88-126)||(40423599-40423637)
chr8 (108-145)||(12748923-12748960)
chr8 (97-134)||(22948094-22948130)
chr8 (108-145)||(26932765-26932802)
chr8 (107-136)||(29908032-29908061)
chr8 (108-137)||(30427753-30427782)
chr8 (108-145)||(32051534-32051571)
chr8 (90-134)||(11708991-11709034)
chr8 (82-134)||(11771704-11771755)
chr8 (107-147)||(12160429-12160469)
chr8 (110-150)||(31336804-31336844)
chr8 (82-150)||(34422366-34422434)
[»] chr2 (37 HSPs)
chr2 (76-133)||(7302155-7302211)
chr2 (110-150)||(32458326-32458366)
chr2 (108-147)||(24579668-24579707)
chr2 (77-144)||(27244649-27244715)
chr2 (108-150)||(660819-660861)
chr2 (107-145)||(961124-961162)
chr2 (90-144)||(3113730-3113783)
chr2 (75-137)||(25598572-25598633)
chr2 (80-145)||(20565077-20565141)
chr2 (108-140)||(3903850-3903882)
chr2 (110-150)||(23250317-23250357)
chr2 (110-145)||(20200729-20200764)
chr2 (82-133)||(24592860-24592910)
chr2 (108-143)||(25612297-25612332)
chr2 (82-149)||(26999107-26999173)
chr2 (82-145)||(30089046-30089108)
chr2 (82-145)||(30125650-30125712)
chr2 (107-150)||(31815884-31815927)
chr2 (90-149)||(36474767-36474825)
chr2 (107-150)||(42347689-42347732)
chr2 (82-144)||(4509534-4509595)
chr2 (107-145)||(11560519-11560557)
chr2 (108-150)||(18693659-18693701)
chr2 (91-145)||(25186244-25186297)
chr2 (76-150)||(25561994-25562067)
chr2 (107-145)||(29544648-29544686)
chr2 (108-145)||(1861811-1861848)
chr2 (108-149)||(3617114-3617155)
chr2 (108-145)||(8091160-8091197)
chr2 (77-134)||(33063978-33064034)
chr2 (108-145)||(36359336-36359373)
chr2 (108-145)||(42791317-42791354)
chr2 (108-145)||(44526150-44526187)
chr2 (96-132)||(980825-980861)
chr2 (76-144)||(7350537-7350604)
chr2 (90-134)||(28202302-28202345)
chr2 (113-145)||(37852037-37852069)
[»] chr4 (40 HSPs)
chr4 (77-145)||(50362141-50362208)
chr4 (83-133)||(21623433-21623482)
chr4 (107-149)||(25783447-25783489)
chr4 (108-145)||(16304100-16304137)
chr4 (108-145)||(37921768-37921805)
chr4 (107-142)||(16995806-16995841)
chr4 (109-148)||(17423176-17423215)
chr4 (90-145)||(20799396-20799450)
chr4 (107-150)||(21318250-21318293)
chr4 (83-145)||(25979197-25979257)
chr4 (78-133)||(27655724-27655778)
chr4 (78-133)||(43782319-43782373)
chr4 (108-150)||(11949760-11949802)
chr4 (107-137)||(23775539-23775569)
chr4 (108-138)||(34247462-34247492)
chr4 (108-150)||(42845047-42845089)
chr4 (108-146)||(49953404-49953442)
chr4 (108-145)||(675940-675977)
chr4 (85-150)||(836232-836296)
chr4 (108-145)||(7230302-7230339)
chr4 (108-145)||(19588176-19588213)
chr4 (108-145)||(20383510-20383547)
chr4 (108-137)||(38453287-38453316)
chr4 (109-150)||(41520977-41521018)
chr4 (88-141)||(42756112-42756164)
chr4 (108-137)||(47018303-47018332)
chr4 (96-145)||(48694652-48694701)
chr4 (76-145)||(54500560-54500628)
chr4 (108-145)||(56204969-56205005)
chr4 (107-151)||(3346270-3346314)
chr4 (79-135)||(4485845-4485900)
chr4 (82-130)||(8494984-8495031)
chr4 (110-150)||(11085762-11085802)
chr4 (88-132)||(12439667-12439710)
chr4 (113-145)||(18094432-18094464)
chr4 (110-150)||(19479474-19479514)
chr4 (108-136)||(34545956-34545984)
chr4 (90-134)||(36203241-36203284)
chr4 (108-136)||(37692898-37692926)
chr4 (109-145)||(49041983-49042019)
[»] chr3 (23 HSPs)
chr3 (110-145)||(5428438-5428473)
chr3 (90-145)||(18870727-18870781)
chr3 (108-149)||(46903930-46903971)
chr3 (109-145)||(16792976-16793012)
chr3 (90-145)||(759596-759650)
chr3 (82-133)||(4216413-4216463)
chr3 (107-150)||(34899118-34899161)
chr3 (90-145)||(45431953-45432007)
chr3 (107-137)||(3755360-3755390)
chr3 (107-149)||(8238585-8238627)
chr3 (107-145)||(27065734-27065772)
chr3 (112-150)||(31214660-31214698)
chr3 (108-149)||(7961730-7961771)
chr3 (96-133)||(12976616-12976652)
chr3 (108-145)||(29631208-29631245)
chr3 (108-145)||(38130961-38130998)
chr3 (108-145)||(41817521-41817558)
chr3 (88-133)||(45096029-45096073)
chr3 (108-145)||(51882202-51882239)
chr3 (114-150)||(552202-552238)
chr3 (108-144)||(25727970-25728006)
chr3 (109-145)||(48656901-48656937)
chr3 (109-145)||(48849765-48849801)
[»] scaffold0016 (1 HSPs)
scaffold0016 (96-150)||(99048-99101)
[»] chr1 (34 HSPs)
chr1 (83-145)||(45190271-45190332)
chr1 (108-145)||(5907821-5907858)
chr1 (96-149)||(16033448-16033500)
chr1 (79-134)||(3509954-3510008)
chr1 (110-145)||(16533035-16533070)
chr1 (90-145)||(25532978-25533032)
chr1 (82-145)||(50040353-50040415)
chr1 (110-144)||(27785971-27786005)
chr1 (107-136)||(2889937-2889966)
chr1 (96-133)||(5033553-5033590)
chr1 (108-137)||(9929241-9929270)
chr1 (108-145)||(15854090-15854127)
chr1 (108-137)||(17283973-17284002)
chr1 (96-149)||(17669656-17669708)
chr1 (108-137)||(23405368-23405397)
chr1 (111-144)||(30521892-30521925)
chr1 (108-145)||(34521192-34521229)
chr1 (91-132)||(41974767-41974807)
chr1 (112-149)||(45418061-45418098)
chr1 (108-149)||(45481515-45481556)
chr1 (108-137)||(50638926-50638955)
chr1 (110-150)||(2596937-2596977)
chr1 (82-130)||(4302449-4302496)
chr1 (82-150)||(8269365-8269432)
chr1 (110-150)||(12268981-12269021)
chr1 (90-150)||(13401602-13401661)
chr1 (108-136)||(15803248-15803276)
chr1 (90-150)||(17139514-17139573)
chr1 (110-146)||(22946551-22946587)
chr1 (90-150)||(27533248-27533307)
chr1 (110-150)||(32962587-32962627)
chr1 (107-147)||(36679611-36679651)
chr1 (107-147)||(45003421-45003461)
chr1 (108-136)||(45140017-45140045)
[»] scaffold0038 (1 HSPs)
scaffold0038 (96-149)||(31920-31972)
[»] chr6 (14 HSPs)
chr6 (96-149)||(28231423-28231475)
chr6 (90-134)||(8637450-8637493)
chr6 (110-145)||(18253341-18253376)
chr6 (90-145)||(33824886-33824940)
chr6 (82-149)||(34701144-34701210)
chr6 (107-149)||(26356079-26356121)
chr6 (107-145)||(32524422-32524460)
chr6 (90-131)||(1535308-1535348)
chr6 (108-145)||(3808120-3808157)
chr6 (108-145)||(8569731-8569768)
chr6 (108-137)||(17145503-17145532)
chr6 (109-150)||(29283838-29283879)
chr6 (82-134)||(2726430-2726481)
chr6 (90-134)||(18256888-18256931)
[»] scaffold1619 (1 HSPs)
scaffold1619 (109-145)||(1054-1090)
[»] scaffold0143 (1 HSPs)
scaffold0143 (98-144)||(4479-4524)
[»] scaffold0025 (1 HSPs)
scaffold0025 (108-150)||(64240-64282)
[»] scaffold0238 (1 HSPs)
scaffold0238 (108-137)||(25411-25440)
[»] scaffold0126 (1 HSPs)
scaffold0126 (108-137)||(34898-34927)
[»] scaffold0057 (1 HSPs)
scaffold0057 (108-145)||(60199-60236)


Alignment Details
Target: scaffold0028 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 72915 - 72596
Alignment:
Q  7 catttttgttaaaattccttgatttcataaagaatatgtgtacatatgtttgataacaattaatcccgaaatgttctcgtaaacttagttcagttgatag 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||     
T  72915 catttttggtaaaattccttgatttcataaagaatatgtgtacatatgtttgatacaaattaatcccgaaatgttctcgtaaacttagttcagttgatat 72816  T
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccgaagacnnnnnnnnn-ttaatgcggaaattgtgacatatgtgcaggatggacgtatta 205  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||          ||||||||||||||||||||||||||||||||||||||||||    
T  72815 gggacaatgcataatatatgcaaggtccagggttcaaactccgacgacaaaaaaaaaattaatgcggaaattgtgacatatgtgcaggatggacgtatta 72716  T
Q  206 actatgatgaatttgctgcaatgatgagaaaaggaaatccggaagctcatactaagaagaggcgtgattcatttgtttcacattagttgtgttaacctta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  72715 actatgatgaatttgctgcaatgatgagaaaaggaaatccggaagctcatactaagaagaggcgtgattcatttgtttcacattaattgtgttaacctta 72616  T
Q  306 aagggttcattttatgcagc 325  Q
    ||||||||||||||||||||    
T  72615 aagggttcattttatgcagc 72596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 38864988 - 38865077
Alignment:
Q  186 tgtgcaggatggacgtattaactatgatgaatttgctgcaatgatgagaaaaggaaatccggaagctcatactaagaagaggcgtgattc 275  Q
    |||||||||||| || |||||||| |||||||||| ||||||||||||||||||||| || ||||| ||||| |||||||||| ||||||    
T  38864988 tgtgcaggatggtcggattaactacgatgaatttgttgcaatgatgagaaaaggaaacccagaagcacataccaagaagaggcatgattc 38865077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 38808462 - 38808373
Alignment:
Q  186 tgtgcaggatggacgtattaactatgatgaatttgctgcaatgatgagaaaaggaaatccggaagctcatactaagaagaggcgtgattc 275  Q
    |||||||||||| || |||||||| |||||||||| |||||||||| | |||||||| || |||||  |||| |||||||||||||||||    
T  38808462 tgtgcaggatggtcggattaactacgatgaatttgttgcaatgatgggcaaaggaaacccagaagcaaataccaagaagaggcgtgattc 38808373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 25988852 - 25988819
Alignment:
Q  117 ataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||||||||||||||    
T  25988852 ataatatatgcaaggtccaggattcaaactccga 25988819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 35494011 - 35493970
Alignment:
Q  109 gacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  35494011 gacaatgcataatatatgcaaggttcgggattcaaactccga 35493970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 15889416 - 15889475
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||| ||| ||||||| ||||    
T  15889416 cttagctcagttggtaggg-acaatgcataatatatgcaaggtctagggttcaaaccccga 15889475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 16701637 - 16701578
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||| ||||||| ||||| |||||| |||||||||||||||||| |||||||||| ||||    
T  16701637 cttagctcagttggtaggg-acaatgaataatatatgcaaggtccgggattcaaaccccga 16701578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 33412118 - 33412150
Alignment:
Q  113 atgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||||||||||    
T  33412118 atgcataatatatgcaaggtccaggattcaaac 33412150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 17151909 - 17151839
Alignment:
Q  79 gttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||| | ||||||||||||| ||| | |||||| |||||||||||||||||  |||||||||| ||||    
T  17151909 gttctcgtgagcttagttcagttgctagag-acaatgtataatatatgcaaggtcttggattcaaaccccga 17151839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 21636388 - 21636339
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggt 132  Q
    ||||||||||||||||||||  ||||| ||||||||| |||||||||||||    
T  21636388 ctcgtaaacttagttcagttcgtaggg-acaatgcatgatatatgcaaggt 21636339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 21644635 - 21644586
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggt 132  Q
    ||||||||||||||||||||  ||||| ||||||||| |||||||||||||    
T  21644635 ctcgtaaacttagttcagttcgtaggg-acaatgcatgatatatgcaaggt 21644586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 28344551 - 28344600
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggt 132  Q
    ||||||| |||||||||||||| |||| |||||| ||||||||||||||||    
T  28344551 ctcgtaagcttagttcagttgaaaggg-acaatgtataatatatgcaaggt 28344600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 35270721 - 35270683
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  35270721 gggacaatgcataaaatatgcaaggtccagggttcaaac 35270683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 41630152 - 41630114
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  41630152 gggacaatgcataatatatgcaaggttcgggattcaaac 41630114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 22522840 - 22522803
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  22522840 ggacaatgcataatatatgcaaggtccggggttcaaac 22522803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 32200503 - 32200451
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaa 143  Q
    ||||| |||||||| |||| ||||||||||||||||||||||||| || |||||    
T  32200503 cttagctcagttgacaggg-acaatgcataatatatgcaaggtccggggttcaa 32200451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 40715988 - 40715951
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  40715988 ggacaatgcataatatatgcaaggtccggggttcaaac 40715951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 8545057 - 8545002
Alignment:
Q  78 tgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    ||||||||| | ||||  |||||||||| || |||||||||||||||||||||||||    
T  8545057 tgttctcgtgagcttaactcagttgataagg-acaatgcataatatatgcaaggtcc 8545002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 27903137 - 27903177
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||| | || ||||||||||||    
T  27903137 acaatgcataatatatgcaaggttcggggttcaaactccga 27903177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 33928660 - 33928700
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactc 147  Q
    |||||||||||||||||||||||||||| || || ||||||    
T  33928660 gggacaatgcataatatatgcaaggtccggggtttaaactc 33928700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 18023700 - 18023743
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  18023700 gggacaatgcataatatatgcaaggtccagggttcaaactccga 18023743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 3830065 - 3830127
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||| ||||||| ||||||  ||||| |||||||||||||||||||||||||||| |||||||    
T  3830065 ctcgtgaacttagctcagtttgtaggg-acaatgcataatatatgcaaggtccagggttcaaac 3830127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 35224115 - 35224179
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactc 147  Q
    ||||| ||||||||||||||| | ||| ||||||||||| ||||||||||||| || |||||||||    
T  35224115 ctcgtgaacttagttcagttggttggg-acaatgcataaaatatgcaaggtccgggtttcaaactc 35224179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 42829284 - 42829232
Alignment:
Q  96 tcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||||||||||| ||||||||||||||||||||| ||| || |||||||||||    
T  42829284 tcagttgataggg-acaatgcataatatatgcaagctccggggttcaaactccg 42829232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 9903500 - 9903567
Alignment:
Q  82 ctcgtaaacttagttcagttgataggg--gacaatgcataatatatgcaaggtccaggattcaaactc 147  Q
    ||||||| |||| |||||||||||  |  || |||||||||||||||||||||||| |||||||||||    
T  9903500 ctcgtaagcttaattcagttgatatagtagataatgcataatatatgcaaggtccacgattcaaactc 9903567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 48629121 - 48629078
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  48629121 cttagttcagttgttaggg-acaatgcataatatatgcaaggtcc 48629078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 6225794 - 6225740
Alignment:
Q  78 tgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtc 133  Q
    |||||||||||||||||||||||||   ||||| ||||||||||| ||||||||||    
T  6225794 tgttctcgtaaacttagttcagttg-gcggggataatgcataataaatgcaaggtc 6225740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 10326951 - 10327005
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||| ||||||| | | | ||||||||||||||||||||||||||||    
T  10326951 ctcgtaaacttagctcagttggt-gtgaacaatgcataatatatgcaaggtccagg 10327005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 21554974 - 21554931
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||    
T  21554974 gggataatgcttaatatatgcaaggtccaggattcaaaccccga 21554931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 26717963 - 26717928
Alignment:
Q  112 aatgcataatatatgcaaggtccaggattcaaactc 147  Q
    |||||||||||||||||||||||||| |||||||||    
T  26717963 aatgcataatatatgcaaggtccagggttcaaactc 26717928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 2648298 - 2648336
Alignment:
Q  112 aatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  2648298 aatgcataatatatgcaaggtccagggttcgaactccga 2648336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 10242506 - 10242544
Alignment:
Q  112 aatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  10242506 aatgcataatatatgcaaggtccagggttcaaaccccga 10242544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 19599167 - 19599209
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||||||| || ||||||| ||||    
T  19599167 ggacaatgcataatatatgcaaggtccggggttcaaaccccga 19599209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 36755036 - 36755078
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||| ||||| | |||||||||||||||    
T  36755036 ggacaatgcataatatatgtaaggttcgggattcaaactccga 36755078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 36760833 - 36760875
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||| ||||| | |||||||||||||||    
T  36760833 ggacaatgcataatatatgtaaggttcgggattcaaactccga 36760875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 47155144 - 47155114
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccagg 137  Q
    |||||||||||||||||||||||||||||||    
T  47155144 gggacaatgcataatatatgcaaggtccagg 47155114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 47342473 - 47342431
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||||||| |  ||||||||||||    
T  47342473 ggacaatgcataatatatgcaaggtccggagttcaaactccga 47342431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 47607950 - 47607908
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    |||||| | |||||||||||||||||||||| |||||||||||    
T  47607950 gggacattacataatatatgcaaggtccagggttcaaactccg 47607908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 5458137 - 5458073
Alignment:
Q  80 ttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||| | ||||| |||||||||| |  ||||||||||||||||||||||||  ||||||||||    
T  5458137 ttctcgtgagcttagctcagttgataaga-acaatgcataatatatgcaaggtctgggattcaaac 5458073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 6781829 - 6781866
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  6781829 ggacaatgcataaaatatgcaaggtccagggttcaaac 6781866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 10244749 - 10244786
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  10244749 ggacaatgcataatatatgcaaggtccggggttcaaac 10244786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 18714470 - 18714507
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  18714470 ggacaatgcataatatatgcaaggtccggggttcaaac 18714507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 19626564 - 19626527
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  19626564 ggacaatgcataatatatgcaaggtccggggttcaaac 19626527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 27462475 - 27462438
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  27462475 ggacaatgcataatatatgcaaggtccggggttcaaac 27462438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 33473560 - 33473531
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||||||||||||||||||||    
T  33473560 ggacaatgcataatatatgcaaggtccagg 33473531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 34448649 - 34448612
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  34448649 ggacaatgcataatatatgtaaggtccagggttcaaac 34448612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 34773237 - 34773277
Alignment:
Q  91 ttagttcagttgataggggacaatgcataatatatgcaaggt 132  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  34773237 ttagttcagttggtaggg-acaatgcataatatatgcaaggt 34773277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 38374230 - 38374193
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  38374230 ggacaatgcatagtatatgcaaggtccagggttcaaac 38374193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 39280855 - 39280818
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactc 147  Q
    ||||||||||||||||||||||||| || |||||||||    
T  39280855 acaatgcataatatatgcaaggtccggggttcaaactc 39280818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 42753567 - 42753526
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactcc 148  Q
    |||||| ||||||||||||||||||||| || ||||||||||    
T  42753567 gggacagtgcataatatatgcaaggtccggggttcaaactcc 42753526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 46737807 - 46737844
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  46737807 ggacaatgcataatatatgcaaggtccggggttcaaac 46737844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 3536291 - 3536251
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||| ||||| | |||||||||||||||    
T  3536291 acaatgcataatatatgtaaggttcgggattcaaactccga 3536251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 20085797 - 20085761
Alignment:
Q  109 gacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||| || |||||||    
T  20085797 gacaatgcataatatatgcaaggtccggggttcaaac 20085761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 20455159 - 20455195
Alignment:
Q  109 gacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  20455159 gacaatgcataatatattcaaggttcaggattcaaac 20455195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 21589267 - 21589203
Alignment:
Q  80 ttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||| || || || ||||||||||||||||| ||||||| ||||||||||    
T  21589267 ttctcgtaaacttagttcagctggtatgg-acaatgcataatatatggaaggtccgggattcaaac 21589203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 7553700 - 7553742
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  7553700 gggacaatgcataatatatgcaaggtccaaggttcaaactccg 7553742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 8881296 - 8881334
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  8881296 gggacaatgcataatatatgcaaggtccagggttcaaac 8881334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 27718950 - 27718891
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||| |||||||||| || ||||||||||||||||||||||||| |  ||||||||||||    
T  27718950 cttagctcagttgatatgg-acaatgcataatatatgcaaggtccggagttcaaactccga 27718891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 29716737 - 29716698
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  29716737 acaattcataatatatgcaaggtccgggattcaaactccg 29716698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 37141358 - 37141420
Alignment:
Q  86 taaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    |||||||| |||||||| || || ||||||||||||||||||||||| | || |||||||||||    
T  37141358 taaacttaattcagttggtatgg-acaatgcataatatatgcaaggttcggggttcaaactccg 37141420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 2508629 - 2508667
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactcc 148  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  2508629 acaatgcataaaatatgcaaggtccatgattcaaactcc 2508667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 18422520 - 18422455
Alignment:
Q  79 gttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||| |||| ||||||||||||   ||||||||||||||||| ||||| | ||||||||||    
T  18422520 gttctcgtaagcttaattcagttgatagaa-acaatgcataatatatgtaaggttcgggattcaaac 18422455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 24195252 - 24195313
Alignment:
Q  88 aacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||| |||||||||| |  ||||| ||||||||||||||||||| || ||||||||||||    
T  24195252 aacttagctcagttgatatga-acaatacataatatatgcaaggtccggggttcaaactccga 24195313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 33482197 - 33482152
Alignment:
Q  98 agttgataggggacaatgcataatatatgcaaggtccaggattcaaa 144  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  33482197 agttgataggg-acaatgcataatttatgcaaggtccagggttcaaa 33482152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 40423599 - 40423637
Alignment:
Q  88 aacttagttcagttgataggggacaatgcataatatatg 126  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  40423599 aacttagttcagttggtaggggacaatacataatatatg 40423637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 12748923 - 12748960
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  12748923 ggacaatgcataatatatgcaaggtccggggttcaaac 12748960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 22948130 - 22948094
Alignment:
Q  97 cagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    |||||||||||| |||||||||||||||||||||||||    
T  22948130 cagttgataggg-acaatgcataatatatgcaaggtcc 22948094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 26932802 - 26932765
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  26932802 ggacaatgcatgatatatgcaaggtccagggttcaaac 26932765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 29908032 - 29908061
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccag 136  Q
    ||||||||||||||||||||||||||||||    
T  29908032 gggacaatgcataatatatgcaaggtccag 29908061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 30427753 - 30427782
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||||||||||||||||||||    
T  30427753 ggacaatgcataatatatgcaaggtccagg 30427782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 32051571 - 32051534
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  32051571 ggacaatgcataatatatgcaaggtccggggttcaaac 32051534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 11708991 - 11709034
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||    
T  11708991 cttagctcagttggtaggg-acaatgcataatatatgcaaggtcc 11709034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 11771704 - 11771755
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    ||||||| ||||| ||||||||||| | ||||| |||||||||||||||||||    
T  11771704 ctcgtaagcttagctcagttgatagag-acaatacataatatatgcaaggtcc 11771755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 12160469 - 12160429
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactc 147  Q
    |||||| |||||||| ||||||||||||||| |||||||||    
T  12160469 gggacactgcataatgtatgcaaggtccagggttcaaactc 12160429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 31336844 - 31336804
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  31336844 acaatgcataatatatgcaaggtctagggttcaaaccccga 31336804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 34422366 - 34422434
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||| ||||||||||  | ||||||||||||||||  ||  | ||| |||||||||||||    
T  34422366 ctcgtaaacttagctcagttgataatgaacaatgcataatatatataaaattcagaattcaaactccga 34422434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 7302211 - 7302155
Alignment:
Q  76 aatgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtc 133  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||    
T  7302211 aatgttctcgtgaacttagctcagttgata-gggacaatgcataaaatatgcaaggtc 7302155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 32458326 - 32458366
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  32458326 acaatgcataatatatgcaaggtccagggttcaaactccga 32458366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 24579707 - 24579668
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactc 147  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  24579707 ggacaatgcataatatatgcaaggtccagggttcaaactc 24579668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 27244649 - 27244715
Alignment:
Q  77 atgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaa 144  Q
    |||| ||||| | ||||| ||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  27244649 atgtcctcgtgagcttagctcagttgataggg-acaatgcataatatatgcaaggtctagggttcaaa 27244715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 660861 - 660819
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||||||||||||||||||| ||||||| ||||    
T  660861 ggacaatgcataatatatgcaaggtccagggttcaaaccccga 660819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 961124 - 961162
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  961124 gggacaatgcataatatatgcaaggtccatgattcaaac 961162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 3113783 - 3113730
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaa 144  Q
    |||||||||||||||| || ||||||||||| ||||||||||||| |||||||||    
T  3113783 cttagttcagttgataagg-acaatgcataaaatatgcaaggtccgggattcaaa 3113730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 25598633 - 25598572
Alignment:
Q  75 aaatgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccagg 137  Q
    |||| ||||||| ||||||| ||||||| || || ||||||||||||||||||||||||||||    
T  25598633 aaatattctcgtgaacttagctcagttggtatgg-acaatgcataatatatgcaaggtccagg 25598572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 20565141 - 20565077
Alignment:
Q  80 ttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||| | ||||| ||||||| ||||| ||||||||||||||||||||||||| || |||||||    
T  20565141 ttctcgtgagcttagctcagttggtaggg-acaatgcataatatatgcaaggtccggggttcaaac 20565077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 3903882 - 3903850
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggatt 140  Q
    |||||||||||||||||||||||||||||||||    
T  3903882 ggacaatgcataatatatgcaaggtccaggatt 3903850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 23250357 - 23250317
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  23250357 acaatgcataatatatgcaaggtccagggttcaaaccccga 23250317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 20200729 - 20200764
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||||| |||||||    
T  20200729 acaatgcataatatatgcaaggtccagggttcaaac 20200764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 24592910 - 24592860
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtc 133  Q
    ||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  24592910 ctcgtgaacttagctcagttggtaggg-acaatgcataatatatgcaaggtc 24592860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 25612332 - 25612297
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaa 143  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25612332 ggacaatgcataatatatgcaaggtccgggattcaa 25612297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 26999107 - 26999173
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||| ||||||||||||||| ||| | ||||||||||||||||||||||||   | |||||||||||    
T  26999107 ctcgtgaacttagttcagttggtagag-acaatgcataatatatgcaaggtctgcggttcaaactccg 26999173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 30089046 - 30089108
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||| ||||||| ||||||| ||||| |||||||||||||||| |||||||| || |||||||    
T  30089046 ctcgtgaacttagctcagttggtaggg-acaatgcataatatatacaaggtccggggttcaaac 30089108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 30125650 - 30125712
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||| ||||||| ||||||| ||||| |||||||||||||||| |||||||| || |||||||    
T  30125650 ctcgtgaacttagctcagttggtaggg-acaatgcataatatatacaaggtccggggttcaaac 30125712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 31815927 - 31815884
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||||||||||||||||| || ||||||| ||||    
T  31815927 gggacaatgcataatatatgcaaggtccggggttcaaaccccga 31815884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 36474767 - 36474825
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||| || |||||| ||||    
T  36474767 cttagctcagttgataggg-acaatgcataaaatatgcaaggtccggggttcaaattccg 36474825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 42347689 - 42347732
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||| |||||||||||||||  ||||||||||||    
T  42347689 gggacaatgcataaaatatgcaaggtccagtgttcaaactccga 42347732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 4509534 - 4509595
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaa 144  Q
    ||||| ||||||| || ||||||| || |||||||||||||||||||||||||| | ||||||    
T  4509534 ctcgtcaacttagctcggttgatatgg-acaatgcataatatatgcaaggtccaaggttcaaa 4509595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 11560519 - 11560557
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  11560519 gggacaatgcataatatatgcaaggttcagggttcaaac 11560557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 18693701 - 18693659
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||    
T  18693701 ggacaatgcataatatatgcaagatccagggttcaaaccccga 18693659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 25186297 - 25186244
Alignment:
Q  91 ttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||| |||||||||| || ||||||||||||||||||||||||| || |||||||    
T  25186297 ttagctcagttgatatgg-acaatgcataatatatgcaaggtccggggttcaaac 25186244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 25562067 - 25561994
Alignment:
Q  76 aatgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||| ||||||| ||  ||||| ||||||| ||||||||| ||  || ||||||||||||    
T  25562067 aatgttctcgtaaacttagctcagttggta-aggacagtgcataaaatatgcaagatctggggttcaaactccga 25561994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 29544648 - 29544686
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||||| || |||||||    
T  29544648 gggacaatgcataatatatgcaaggtccggggttcaaac 29544686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 1861848 - 1861811
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||||| | |||||||    
T  1861848 ggacaatgcataatatatgcaaggtccatggttcaaac 1861811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 3617114 - 3617155
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||||||||||||||| |||| ||||||| |||||||||||    
T  3617114 ggacaatgcataatatacgcaaagtccagggttcaaactccg 3617155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 8091197 - 8091160
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  8091197 ggacaatgcataatatatgcaaggtccggggttcaaac 8091160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 33063978 - 33064034
Alignment:
Q  77 atgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    |||| ||||| | ||||| |||||||||| || |||||||||||||||||||||||||    
T  33063978 atgtcctcgtgagcttagctcagttgatatgg-acaatgcataatatatgcaaggtcc 33064034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 36359336 - 36359373
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  36359336 ggacaatgcataatatatgcaaggtccggggttcaaac 36359373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 42791317 - 42791354
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  42791317 ggacaatgcataatatatgcaaggtccggggttcaaac 42791354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 44526150 - 44526187
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  44526150 ggacaatgcataatatacgcaaggtccgggattcaaac 44526187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 980861 - 980825
Alignment:
Q  96 tcagttgataggggacaatgcataatatatgcaaggt 132  Q
    |||||||| |||||||||||||||| |||||||||||    
T  980861 tcagttgacaggggacaatgcataaaatatgcaaggt 980825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 7350537 - 7350604
Alignment:
Q  76 aatgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaa 144  Q
    ||||| ||||||| ||||| ||||||| || || |||||||||||||||||||| ||| ||| ||||||    
T  7350537 aatgtactcgtaagcttagctcagttggtatgg-acaatgcataatatatgcaaagtctagggttcaaa 7350604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 28202302 - 28202345
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    ||||| ||||||||||||| ||||||||||||||||| |||||||    
T  28202302 cttagctcagttgataggg-acaatgcataatatatgtaaggtcc 28202345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 37852037 - 37852069
Alignment:
Q  113 atgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||| |||||||    
T  37852037 atgcataatatatgcaaggtccagggttcaaac 37852069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 50362208 - 50362141
Alignment:
Q  77 atgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||| ||||| | ||||| ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  50362208 atgtcctcgtgagcttagctcagttggtaggg-acaatgcataatatatgcaaggtccagggttcaaac 50362141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 21623482 - 21623433
Alignment:
Q  83 tcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtc 133  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  21623482 tcgtgaacttagttcagttggtaggg-acaatgcataatatatgcaaggtc 21623433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 25783489 - 25783447
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  25783489 gggacaatgcataatatatgcaaggtccggggttcaaactccg 25783447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 16304137 - 16304100
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  16304137 ggacaatgcataatatatgcaaggtccgggattcaaac 16304100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 37921768 - 37921805
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  37921768 ggacaatgcataatatatgcaaggtccgggattcaaac 37921805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 16995806 - 16995841
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattca 142  Q
    |||||||||||||||||||||||||||| |||||||    
T  16995806 gggacaatgcataatatatgcaaggtcccggattca 16995841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 17423215 - 17423176
Alignment:
Q  109 gacaatgcataatatatgcaaggtccaggattcaaactcc 148  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  17423215 gacaatgcataatatatgcaaggtccggggttcaaactcc 17423176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 20799450 - 20799396
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||| || |||||||    
T  20799450 cttagctcagttggtaggg-acaatgcataatatatgcaaggtccggggttcaaac 20799396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 21318293 - 21318250
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||    
T  21318293 gggacaatgcataatatatgcaaggtctagggttcaaaccccga 21318250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 25979257 - 25979197
Alignment:
Q  83 tcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||  ||||  ||||||||||| |||||||||||  |||||||||||    
T  25979257 tcgtaaacttagttcagtttgtagg--acaatgcataacatatgcaaggtttaggattcaaac 25979197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 27655724 - 27655778
Alignment:
Q  78 tgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtc 133  Q
    |||||| || |||||||||||||||||||   ||||||||||||||||||||||||    
T  27655724 tgttcttgtgaacttagttcagttgatagaa-acaatgcataatatatgcaaggtc 27655778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 43782373 - 43782319
Alignment:
Q  78 tgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtc 133  Q
    ||||||||||||||||| ||||||| ||  | ||||||||||||||||||||||||    
T  43782373 tgttctcgtaaacttagctcagttggtaatg-acaatgcataatatatgcaaggtc 43782319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 11949802 - 11949760
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||||||| || ||||||| ||||    
T  11949802 ggacaatgcataatatatgcaaggtccggggttcaaaccccga 11949760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Original strand, 23775539 - 23775569
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccagg 137  Q
    |||||||||||||||||||||||||||||||    
T  23775539 gggacaatgcataatatatgcaaggtccagg 23775569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 34247462 - 34247492
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagga 138  Q
    |||||||||||||||||||||||||||||||    
T  34247462 ggacaatgcataatatatgcaaggtccagga 34247492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 42845047 - 42845089
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||||||| || || |||||||||    
T  42845047 ggacaatgcataatatatgcaaggtccggggttaaaactccga 42845089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 49953442 - 49953404
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaact 146  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  49953442 ggacaatgcataatatatgcaaggtccggggttcaaact 49953404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 675940 - 675977
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  675940 ggacaatgcataatatatgcaaggtccggggttcaaac 675977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 836296 - 836232
Alignment:
Q  85 gtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||| ||||| ||||||| ||||| |||||||| ||||||||||||||||  | ||||||||||||    
T  836296 gtaagcttagctcagttggtaggg-acaatgcaaaatatatgcaaggtccgaggttcaaactccga 836232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 7230302 - 7230339
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  7230302 ggacaatgcataatatatgcaaggtccggggttcaaac 7230339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 19588176 - 19588213
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  19588176 ggacaatgcataaaatatgcaaggtccagggttcaaac 19588213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 20383510 - 20383547
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  20383510 ggacaatgcataatatatgcaaggtccggggttcaaac 20383547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 38453287 - 38453316
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||||||||||||||||||||    
T  38453287 ggacaatgcataatatatgcaaggtccagg 38453316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 41520977 - 41521018
Alignment:
Q  109 gacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||||||||||||| || | ||||||||||||    
T  41520977 gacaatgcataatatatgcaaggttcaaggttcaaactccga 41521018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 42756164 - 42756112
Alignment:
Q  88 aacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattc 141  Q
    ||||||| |||||||||| || ||||||||||||||||||||||| | ||||||    
T  42756164 aacttagctcagttgataagg-acaatgcataatatatgcaaggttcgggattc 42756112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 47018303 - 47018332
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||||||||||||||||||||    
T  47018303 ggacaatgcataatatatgcaaggtccagg 47018332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 48694701 - 48694652
Alignment:
Q  96 tcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||| | |||||| |||||||||||||||||||||||  |||||||    
T  48694701 tcagttgaaaagggacagtgcataatatatgcaaggtccagagttcaaac 48694652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 54500560 - 54500628
Alignment:
Q  76 aatgttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||| | ||||| ||||||| ||| | ||||||||||||||||| ||||||| || |||||||    
T  54500560 aatgttctcgtgagcttagctcagttggtagag-acaatgcataatatatgtaaggtccggggttcaaac 54500628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 56204969 - 56205005
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  56204969 ggacaatgcataatatatgcaaggtcc-ggattcaaac 56205005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 3346314 - 3346270
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccgaa 151  Q
    ||||||||||||||||||||||||||||  |  ||||||||||||    
T  3346314 gggacaatgcataatatatgcaaggtccgagtgtcaaactccgaa 3346270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 4485900 - 4485845
Alignment:
Q  79 gttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtcca 135  Q
    |||||||| ||||||||||| |||||| || ||||| |||| |||||||||||||||    
T  4485900 gttctcgtgaacttagttcaattgataagg-acaatacatagtatatgcaaggtcca 4485845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 8494984 - 8495031
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaag 130  Q
    ||||| ||||||| ||||||| ||||| |||||||||||||||||||||    
T  8494984 ctcgtgaacttagctcagttggtaggg-acaatgcataatatatgcaag 8495031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 11085802 - 11085762
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||| |  ||||||||||||||    
T  11085802 acaatgcataatatatgcaaggttcgagattcaaactccga 11085762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 12439667 - 12439710
Alignment:
Q  88 aacttagttcagttgataggggacaatgcataatatatgcaaggt 132  Q
    ||||||| |||||||||| || |||||||||||||||||||||||    
T  12439667 aacttagctcagttgataagg-acaatgcataatatatgcaaggt 12439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 18094432 - 18094464
Alignment:
Q  113 atgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||| |||||||    
T  18094432 atgcataatatatgcaaggtccagggttcaaac 18094464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 19479514 - 19479474
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||||| || ||||||| ||||    
T  19479514 acaatgcataatatatgcaaggtccggggttcaaaccccga 19479474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 34545956 - 34545984
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccag 136  Q
    |||||||||||||||||||||||||||||    
T  34545956 ggacaatgcataatatatgcaaggtccag 34545984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 36203241 - 36203284
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    ||||| |||||||||| || |||||||||||||||||||||||||    
T  36203241 cttagctcagttgataagg-acaatgcataatatatgcaaggtcc 36203284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 37692926 - 37692898
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccag 136  Q
    |||||||||||||||||||||||||||||    
T  37692926 ggacaatgcataatatatgcaaggtccag 37692898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 49042019 - 49041983
Alignment:
Q  109 gacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||| || |||||||    
T  49042019 gacaatgcataatatatgcaaggtccggggttcaaac 49041983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 5428473 - 5428438
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||||||||||||    
T  5428473 acaatgcataatatatgcaaggtccaggattcaaac 5428438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 18870781 - 18870727
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||    
T  18870781 cttagctcagttggtaggg-acaatgcataatatatgcaaggtccatgattcaaac 18870727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 46903930 - 46903971
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||||||||||||||||| |||||||||| |||||||||||    
T  46903930 ggacaatgcataatatatgtaaggtccagggttcaaactccg 46903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 16793012 - 16792976
Alignment:
Q  109 gacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16793012 gacaatgcataatatatgcaaggtccagggttcaaac 16792976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 759650 - 759596
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||| ||||| |||||||||||||||||||| || |||| |||||||    
T  759650 cttagttcagttggtaggg-acaatgcataatatatgcaaagttcagggttcaaac 759596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 4216463 - 4216413
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtc 133  Q
    ||||| ||||||| |||||||||| || ||||||||||||||||||||||||    
T  4216463 ctcgtgaacttagctcagttgataagg-acaatgcataatatatgcaaggtc 4216413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 34899118 - 34899161
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||||||||||||||||| || ||||||| ||||    
T  34899118 gggacaatgcataatatatgcaaggtccggggttcaaaccccga 34899161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 45431953 - 45432007
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||| || |||||||    
T  45431953 cttagctcagttggtaggg-acaatgcataatatatgcaaggtccggggttcaaac 45432007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Original strand, 3755360 - 3755390
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccagg 137  Q
    |||||||||||||||||||||||||||||||    
T  3755360 gggacaatgcataatatatgcaaggtccagg 3755390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 8238585 - 8238627
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    |||||||||||||||||||||||||||  || |||||||||||    
T  8238585 gggacaatgcataatatatgcaaggtctggggttcaaactccg 8238627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 27065772 - 27065734
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  27065772 gggacaatgcataaaatatgcaaggtccagggttcaaac 27065734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 31214660 - 31214698
Alignment:
Q  112 aatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  31214660 aatgcataatatatgtaaggtccgggattcaaactccga 31214698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 7961771 - 7961730
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    |||||||| |||||||||||| |||||||||||| |||||||    
T  7961771 ggacaatgtataatatatgcagggtccaggattcgaactccg 7961730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 12976652 - 12976616
Alignment:
Q  96 tcagttgataggggacaatgcataatatatgcaaggtc 133  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  12976652 tcagttgataggg-acaatgcataatatatgcaaggtc 12976616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 29631208 - 29631245
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  29631208 ggacaatgcataatatatgcaaggttcgggattcaaac 29631245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 38130998 - 38130961
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  38130998 ggacaatgcataatatatgcaaggtccggggttcaaac 38130961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 41817521 - 41817558
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  41817521 ggacaatgcataatatatgcaaggtccggggttcaaac 41817558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 45096029 - 45096073
Alignment:
Q  88 aacttagttcagttgataggggacaatgcataatatatgcaaggtc 133  Q
    ||||||| |||||||||| || ||||||||||||||||||||||||    
T  45096029 aacttagctcagttgataagg-acaatgcataatatatgcaaggtc 45096073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 51882239 - 51882202
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  51882239 ggacaatgcataatatatgcaagatccagggttcaaac 51882202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 552202 - 552238
Alignment:
Q  114 tgcataatatatgcaaggtccaggattcaaactccga 150  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  552202 tgcataatatatgcaaggtccagggttcaaaccccga 552238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 25728006 - 25727970
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaa 144  Q
    ||||||||||||||||||||||||||| || ||||||    
T  25728006 ggacaatgcataatatatgcaaggtccggggttcaaa 25727970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 48656937 - 48656901
Alignment:
Q  109 gacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||| || |||||||    
T  48656937 gacaatgcataatatatgcaaggtccggggttcaaac 48656901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 48849801 - 48849765
Alignment:
Q  109 gacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||| || |||||||    
T  48849801 gacaatgcataatatatgcaaggtccggggttcaaac 48849765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 99048 - 99101
Alignment:
Q  96 tcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||| ||||||||||||||||||||||||  || ||||||||||||    
T  99048 tcagttgataggg-acaatgcataatatatgcaaggtctggggttcaaactccga 99101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 45190332 - 45190271
Alignment:
Q  83 tcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||| ||||||||||||||| || || ||||||||||||||||||||||| | ||||||||||    
T  45190332 tcgtgaacttagttcagttggtatgg-acaatgcataatatatgcaaggttcgggattcaaac 45190271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 5907821 - 5907858
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||||||| |||||||    
T  5907821 ggacaatgcataatatatgcaaggtccagggttcaaac 5907858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 16033500 - 16033448
Alignment:
Q  96 tcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||||||||||| ||||||||||||||||||||||||  || |||||||||||    
T  16033500 tcagttgataggg-acaatgcataatatatgcaaggtctggggttcaaactccg 16033448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 3510008 - 3509954
Alignment:
Q  79 gttctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    |||||||| ||||||| ||||||| || || |||||||||||||||||||||||||    
T  3510008 gttctcgtgaacttagctcagttggtatgg-acaatgcataatatatgcaaggtcc 3509954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 16533070 - 16533035
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||| |||||||||||    
T  16533070 acaatgcataatatatgcaaggtctaggattcaaac 16533035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 25532978 - 25533032
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||| || || ||||||||||||||||||||||||| || |||||||    
T  25532978 cttagttcagttggtatgg-acaatgcataatatatgcaaggtccggggttcaaac 25533032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 50040353 - 50040415
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||| ||||||| ||||||| | ||| ||||||||||| |||||||||||||||| |||||||    
T  50040353 ctcgtgaacttagctcagttggttggg-acaatgcataaaatatgcaaggtccagggttcaaac 50040415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 27786005 - 27785971
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaa 144  Q
    ||||| |||||||||||||||||||||||||||||    
T  27786005 acaatacataatatatgcaaggtccaggattcaaa 27785971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 2889966 - 2889937
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccag 136  Q
    ||||||||||||||||||||||||||||||    
T  2889966 gggacaatgcataatatatgcaaggtccag 2889937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 5033553 - 5033590
Alignment:
Q  96 tcagttgataggggacaatgcataatatatgcaaggtc 133  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  5033553 tcagttgataagggacagtgcataatatatgcaaggtc 5033590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 9929270 - 9929241
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||||||||||||||||||||    
T  9929270 ggacaatgcataatatatgcaaggtccagg 9929241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 15854127 - 15854090
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  15854127 ggacgatgcataatatatgcaagatccaggattcaaac 15854090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 17283973 - 17284002
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||||||||||||||||||||    
T  17283973 ggacaatgcataatatatgcaaggtccagg 17284002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 17669656 - 17669708
Alignment:
Q  96 tcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||||||||||| |||||| |||||||||||||||| | || |||||||||||    
T  17669656 tcagttgataggg-acaatgtataatatatgcaaggttcggggttcaaactccg 17669708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 23405397 - 23405368
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||||||||||||||||||||    
T  23405397 ggacaatgcataatatatgcaaggtccagg 23405368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 30521892 - 30521925
Alignment:
Q  111 caatgcataatatatgcaaggtccaggattcaaa 144  Q
    |||||||||||||||||||||||| |||||||||    
T  30521892 caatgcataatatatgcaaggtccgggattcaaa 30521925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 34521229 - 34521192
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  34521229 ggacaatgcataatatatgcaaggtccggggttcaaac 34521192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 41974767 - 41974807
Alignment:
Q  91 ttagttcagttgataggggacaatgcataatatatgcaaggt 132  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  41974767 ttagttcagttgataggg-ataatgcataatatatgcaaggt 41974807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 45418098 - 45418061
Alignment:
Q  112 aatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  45418098 aatgcataatatatgcaaggttcaggattcgaactccg 45418061  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 45481515 - 45481556
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||||||||||||||||||||||||| || ||| |||||||    
T  45481515 ggacaatgcataatatatgcaaggtccggggttcgaactccg 45481556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 50638955 - 50638926
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||||||||||||||||||||    
T  50638955 ggacaatgcataatatatgcaaggtccagg 50638926  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 2596977 - 2596937
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||| ||||||||||||| || ||||||||||||    
T  2596977 acaatgcataaaatatgcaaggtccggggttcaaactccga 2596937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 4302449 - 4302496
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaag 130  Q
    ||||||||||||||| ||||| || || |||||||||||||||||||||    
T  4302449 ctcgtaaacttagtttagttggtatgg-acaatgcataatatatgcaag 4302496  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 8269432 - 8269365
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||| ||||||| ||||||| || || ||||| ||||||||||||||||||| || ||||||| ||||    
T  8269432 ctcgtgaacttagctcagttggtaagg-acaatacataatatatgcaaggtccggggttcaaaccccga 8269365  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 12269021 - 12268981
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||||| || ||||||| ||||    
T  12269021 acaatgcataatatatgcaaggtccggggttcaaaccccga 12268981  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 13401602 - 13401661
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||| | ||||||||||||||||| ||||| | || ||||||| ||||    
T  13401602 cttagttcagttgatagag-acaatgcataatatatgtaaggttcggggttcaaaccccga 13401661  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 15803276 - 15803248
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccag 136  Q
    |||||||||||||||||||||||||||||    
T  15803276 ggacaatgcataatatatgcaaggtccag 15803248  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 17139573 - 17139514
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||| ||||||| ||||| |||||||||||||||| |||||||| || ||||||| ||||    
T  17139573 cttagctcagttggtaggg-acaatgcataatatattcaaggtccggggttcaaaccccga 17139514  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 22946587 - 22946551
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaact 146  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  22946587 acaatgcataatatatgcaaggtctaggattcgaact 22946551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 27533248 - 27533307
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||| | || ||||||| ||||    
T  27533248 cttagatcagttggtaggg-acaatgcataatatatgcaaggttcggggttcaaaccccga 27533307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 32962587 - 32962627
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||| |||||||||||||||| ||||||| ||||    
T  32962587 acaatgcataaaatatgcaaggtccagggttcaaaccccga 32962627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 36679611 - 36679651
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactc 147  Q
    ||||||||| |||||||||||||||||| || |||||||||    
T  36679611 gggacaatggataatatatgcaaggtccggggttcaaactc 36679651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 45003421 - 45003461
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactc 147  Q
    ||||||||| |||||||||||||||||| || |||||||||    
T  45003421 gggacaatggataatatatgcaaggtccggggttcaaactc 45003461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 45140045 - 45140017
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccag 136  Q
    |||||||||||||||||||||||||||||    
T  45140045 ggacaatgcataatatatgcaaggtccag 45140017  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 31972 - 31920
Alignment:
Q  96 tcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||| ||||||    
T  31972 tcagttgataggg-acaatgcataatatatgcaaggtccggggttcacactccg 31920  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 28231475 - 28231423
Alignment:
Q  96 tcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||| ||||||    
T  28231475 tcagttgataggg-acaatgcataatatatgcaaggtccggggttcacactccg 28231423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 8637493 - 8637450
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  8637493 cttagttcagttggtaggg-acaatgcataatatatgcaaggtcc 8637450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 18253376 - 18253341
Alignment:
Q  110 acaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||||| |||||||    
T  18253376 acaatgcataatatatgcaaggtccagggttcaaac 18253341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 33824886 - 33824940
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||| |||||||||| || ||||||||||||||||||||||||| || |||||||    
T  33824886 cttagctcagttgataagg-acaatgcataatatatgcaaggtccggggttcaaac 33824940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 34701144 - 34701210
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    ||||| ||||||||||||||| ||||  ||||||||||||||||||||||||   | |||||||||||    
T  34701144 ctcgtgaacttagttcagttggtagga-acaatgcataatatatgcaaggtctgaggttcaaactccg 34701210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 26356121 - 26356079
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaactccg 149  Q
    |||||||||||||||||||||||||| | || |||||||||||    
T  26356121 gggacaatgcataatatatgcaaggttcggggttcaaactccg 26356079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 32524460 - 32524422
Alignment:
Q  107 gggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  32524460 gggacaatgcataatatatgcaaagtccagggttcaaac 32524422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 1535308 - 1535348
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaagg 131  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  1535308 cttagttcagttgatagga-acaatgcataatatatgcaagg 1535348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 3808157 - 3808120
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||||  |||||||||    
T  3808157 ggacaatgcataatatatgcaaggtccgagattcaaac 3808120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 8569731 - 8569768
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    ||||||||||||||||||||||||||| || |||||||    
T  8569731 ggacaatgcataatatatgcaaggtccggggttcaaac 8569768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 17145503 - 17145532
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||||||||||||||||||||    
T  17145503 ggacaatgcataatatatgcaaggtccagg 17145532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 29283838 - 29283879
Alignment:
Q  109 gacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||    
T  29283838 gacaatgtataatatatgcaaggtctagggttcaaactccga 29283879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 2726481 - 2726430
Alignment:
Q  82 ctcgtaaacttagttcagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    ||||||||||||  ||||||| || || |||||||||||||||||||||||||    
T  2726481 ctcgtaaacttaactcagttggtatgg-acaatgcataatatatgcaaggtcc 2726430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 18256888 - 18256931
Alignment:
Q  90 cttagttcagttgataggggacaatgcataatatatgcaaggtcc 134  Q
    ||||| |||||||||| || |||||||||||||||||||||||||    
T  18256888 cttagctcagttgataagg-acaatgcataatatatgcaaggtcc 18256931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1619 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1619
Description:

Target: scaffold1619; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 1054 - 1090
Alignment:
Q  109 gacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1054 gacaatgcataatatatgcaaggtccgggattcaaac 1090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 4479 - 4524
Alignment:
Q  98 agttgataggggacaatgcataatatatgcaaggtccaggattcaaa 144  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  4479 agttgataggg-acaatgcataatttatgcaaggtccagggttcaaa 4524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 64240 - 64282
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaactccga 150  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||    
T  64240 ggacaatgcataatatatgcaaggtccgggattcgaaccccga 64282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 25411 - 25440
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||||||||||||||||||||    
T  25411 ggacaatgcataatatatgcaaggtccagg 25440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 34927 - 34898
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccagg 137  Q
    ||||||||||||||||||||||||||||||    
T  34927 ggacaatgcataatatatgcaaggtccagg 34898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 60236 - 60199
Alignment:
Q  108 ggacaatgcataatatatgcaaggtccaggattcaaac 145  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  60236 ggacaacgcataatatatgcaaggtcaaggattcaaac 60199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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