View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5966-Insertion-4 (Length: 622)
Name: NF5966-Insertion-4
Description: NF5966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5966-Insertion-4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 582; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 9 - 622
Target Start/End: Original strand, 47048845 - 47049458
Alignment:
| Q |
9 |
taaagaacctgcaatctgtttggccaatggtatgtgcaccttcacaaaaatcaagagtttaggttaatacataaataaatgtgtagcaaatgctaggaac |
108 |
Q |
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| T |
47048845 |
taaagaacctgcaatctgtttggccaatggtatgtgcaccttcacaaaaatcaagagtttaggttaatacataaataaatgtgtagcaaatgctaggaac |
47048944 |
T |
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| Q |
109 |
atataagaaaagtaattagagactagttttattttttcgttgttgttaatccaatttcgtttatagattaaaagttttgaaagaaagcataccaagtaag |
208 |
Q |
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| T |
47048945 |
atataagaaaagtaattagagactaactttattttttcgttgttgttagtccaatttcgtttatagattaaaagttttgaaagaaagcataccaagtaag |
47049044 |
T |
|
| Q |
209 |
gtaacaaggtcatgatcatttagacctttggcagcaaatttttgtctatggacagaaacaggttcaagcggagaaggcaagtttgaggcttgagatgata |
308 |
Q |
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| T |
47049045 |
gtaacaaggtcatgatcatttagacctttggcagcaaatttttgtcgatggacagaaacaggttcaagcggagaaggcaagtttgaggcttgagatgata |
47049144 |
T |
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| Q |
309 |
aagaaatccttccatcttttcttcctgtgggcaccggccaacttgggccatcactctgtcatattcacgaatcaaacgtgttaattttatcatggttact |
408 |
Q |
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| T |
47049145 |
aagaaatccttccatcttttcttcctgtgggcactggccaacttgggccatcactctgtcatattcacgaatcacacgtgttaattttatcatggttact |
47049244 |
T |
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| Q |
409 |
tcaaaaacaaaatgtattgtgtgtgcgcgcgcgcgtggagtagagtgagtttgactaagttttaagattgctttaataccaaatcgacagcatcacgagc |
508 |
Q |
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| T |
47049245 |
tcaaaaacaaaatgtattgtgcgggcgcgcgcgcgtggagtagagtgagtttgactaagttttaagattgctttaataccaaatcgacagcatcacgagc |
47049344 |
T |
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| Q |
509 |
tgccaatgctaggatgtcagcacatgatacaacaccagggcatatggcctctatttgtgattttgcattatctatcacttcaaaacctcttagaccaagg |
608 |
Q |
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| T |
47049345 |
tgccaatgctaggatgtcagcacatgatacaacaccagggcatatggcctctatttgtgattttgcattatctatcacttcaaaacctcttagaccaagg |
47049444 |
T |
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| Q |
609 |
tttggtaatgcact |
622 |
Q |
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| T |
47049445 |
tttggtaatgcact |
47049458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 392 - 594
Target Start/End: Original strand, 47052429 - 47052631
Alignment:
| Q |
392 |
attttatcatggttacttcaaaaacaaaatgtattgtgtgtgcgcgcgcgcgtggagtagagtgagtttgactaagttttaagattgctttaataccaaa |
491 |
Q |
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| T |
47052429 |
attttatcatggttccttcaaaaacacaatgtattgtgtgtgagcgcgcgtgtgtggtagagtgagtttgagtaagttttaagattgctttaataccaaa |
47052528 |
T |
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| Q |
492 |
tcgacagcatcacgagctgccaatgctaggatgtcagcacatgatacaacaccagggcatatggcctctatttgtgattttgcattatctatcacttcaa |
591 |
Q |
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| T |
47052529 |
ttgacagcatcacgggctgccaatgctaggatgtcagcacatgagacaactccggggcatatggcctctatttgtgattttgcattatctatcacttcaa |
47052628 |
T |
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| Q |
592 |
aac |
594 |
Q |
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||| |
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| T |
47052629 |
aac |
47052631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 552
Target Start/End: Complemental strand, 32493801 - 32493747
Alignment:
| Q |
498 |
gcatcacgagctgccaatgctaggatgtcagcacatgatacaacaccagggcata |
552 |
Q |
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|||||||||||||| | ||||| |||||||||||| || ||||| |||||||||| |
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| T |
32493801 |
gcatcacgagctgctactgctacgatgtcagcacaagacacaactccagggcata |
32493747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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